ID:

dsi_28988

 Coordinate:

3l:7381372-7381429 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.3 -3.8 -3.6

Flybase annnotation

five_prime_UTR [3l_7381332_7381718_+]; exon [3l_7381332_7381718_+]

No Repeatable elements found

Sense Strand Reads

----------####################################################################################################################################################
AAAGCAGAGAAAGAAATAATAATTCGTGTTTTGTGTGCAGAGTGCAAAGGGTAAATAAGTTGCAATATCATCGCAATCGCCGTCGATAGCCCTAAAAACCCGATAAAGTGCCAGGATTTTTGGATATCCATATCGTGCGCGCAGCTCTACTATTTTCC
**************************************************......................((.((((....)))).))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................ATCCATATCGTGCGCGCAGCT............ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................AGAGTGCAAAGGGTAAATAA.................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................ATCGCAATCGCCGTCGAT....................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......GAGAAAGAAATAATAATTC..................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................................................CGCCGTCGATAGCCCTAA............................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................AATATCATCGCAATCGCCGTCGAC....................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................AATATCATCGCAATCGCCGTC.......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................CGCAATCGCCGTCGATAGCCCTAAA.............................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................ATAATTCGTGTTTTGTGTGCA....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................GTGTTTTGTGTGCAGAGTGCAAAG............................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................GATAAAGTGCCAGGATTTTTG.................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................GCCGTCGATAGCCCT................................................................. 15 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
........................CGTGTTTTGTGTGCAGAG.................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................ATATCATCGCAATCGCCGTCGAT....................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................CAATATCATCGCAATCGCCGTC.......................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................TTGTGTGCAGAGTGCAAAGGGTAAAC...................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................ATCCATATCGTGCGCGCAGCTCTACG....... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................CAATATCATCGCAATCGCCGTCGAT....................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................TCATCGCAATCGCCGTCGAT....................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................ATAGCCCTAAAAACCCGA....................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...GCAGAGAAAGAAATAATAAT....................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................CATCGCAATCGCCGTCGAT....................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................AATATCATCGCAATCGCCG............................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................ATTCGTGTTTTGTGTGCAGAGTGCA................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................CCGTCGATCGCCCTA................................................................ 15 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTCGTCTCTTTCTTTATTATTAAGCACAAAACACACGTCTCACGTTTCCCATTTATTCAACGTTATAGTAGCGTTAGCGGCAGCTATCGGGATTTTTGGGCTATTTCACGGTCCTAAAAACCTATAGGTATAGCACGCGCGTCGAGATGATAAAAGG
**************************************************......................((.((((....)))).))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
..................AAATAAGCACAAAACACACGTCT..................................................................................................................... 23 2 1 1.00 1 1 0 0 0
.......................................................................................................................................ACGCGCGTCGATATGATAAAA.. 21 1 1 1.00 1 0 1 0 0
..........................................................................TTAGCGGCAGCTATCGGGATT............................................................... 21 0 1 1.00 1 0 0 1 0
..................................................................................ATCTCTCGGGATTTTTGGACT....................................................... 21 3 2 0.50 1 1 0 0 0
...................................................................................................................................TCGCGCGCACGTCGAGATG........ 19 3 9 0.11 1 0 0 0 1
...................................................................................................................................TCGCGCGCACGTCGAGAT......... 18 3 20 0.10 2 0 0 0 2

Generated: 04/24/2015 at 06:50 AM