ID:

dsi_28976

 Coordinate:

x:16103514-16103663 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -3.5

Flybase annnotation

CDS [x_16103502_16103513_+]; five_prime_UTR [x_16103240_16103501_+]; exon [x_16103240_16103513_+]; intron [x_16103514_16106817_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTGGGACAAGAACAACATCGAGAGCTACAGCAACAACATGGATGCCGAGGTGTGTAATTAAAATGCAATCGTTTAATTTAAGACACATGCCTAAAAAAAAAGAAAACCCAAAACGCAAAAAGTGAAACCCAAAAGACGAAAGGGCCGAAAAAGAGAAATAATTACGACGCACAACAAAAAACGAGTTAATTTTGCCGGTTGTCAAACAACAACAAAAACTCAAATTCAAAGCAAGAAACAAAAACAAAA
******************************************************************************...........((((................................................)).))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................AAACCCAAAAGACGAAAGGGC........................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0
.....................................................................................................................................AAGACGAAAGGGCCT...................................................................................................... 15 1 4 2.50 10 10 0 0 0 0 0 0
..............................................................................TTAAGACACATGCCTAAAAA........................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................AATAATTACGACGCACAACAA........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................AGAAACGAGTTAATTTTGC...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.............................AGCAACAACATGGATGCCGAG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AGTTAATTTTGCCGGTTGTCAA............................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................GAAGCCCAAAGGACGAAAGGGC........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
..............AACATCGAGAGCTACAGCAAC....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................AACCCAAAAGACGAGGGGGCCG...................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......CAAGAACAACATCGAGAGCTACAGCA......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
......ACAAGAACAACATCGAGA.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................GAGTTAATTTTGCCGGTTGTC.............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................AGGGCCGAAAAAGAGAAATAA........................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................CAAAGCGCAAAAGGTGAAACC........................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
............ACAACATCGAGAGCTACAGCAA........................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................CCCAAAAGACGAGAGGGCCG...................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................AAACCCAAAAGACGAAAGG.......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................GAAGACGAAAGGGCC....................................................................................................... 15 1 4 0.50 2 2 0 0 0 0 0 0
....................................ACATGGATGCCGAGG....................................................................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................................AGAAAGAGAAGTAATTGCGAC................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................................ATTACGACGCGCAAC.......................................................................... 15 1 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................ACCCAAAGGACGAGGGGGCC....................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0
...................................AGCATGGATGCCGAGG....................................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0
.....................................................................................................................................AAGACGAAAGGGCCTCTAAA................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0
.......................................TGTATGCCGAGGTGT.................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0
...................................................................................................................................AAAAGACGAAAGGGCCTC..................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0
......................................ATGTATGCCGAGGTG..................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0 0
.....GCCCAGAACAACATCGAGA.................................................................................................................................................................................................................................. 19 2 8 0.13 1 0 0 0 0 0 1 0
.....................................................................................................................................AAGACGAAAGGGCCA...................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0
..................................CAACATTGATGCTGAGGTGC.................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1
.............................................GCGAGGTGTCTAATTAA............................................................................................................................................................................................ 17 2 17 0.06 1 1 0 0 0 0 0 0
....................................ACATGGATGCCAAGG....................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TACAAAAACTCAAATT....................... 16 1 20 0.05 1 0 1 0 0 0 0 0
.....................................TATGTATGCCGAGGTG..................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
.................................................................................................................................CATGAAGACGAAAGGGCC....................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

AGACCCTGTTCTTGTTGTAGCTCTCGATGTCGTTGTTGTACCTACGGCTCCACACATTAATTTTACGTTAGCAAATTAAATTCTGTGTACGGATTTTTTTTTCTTTTGGGTTTTGCGTTTTTCACTTTGGGTTTTCTGCTTTCCCGGCTTTTTCTCTTTATTAATGCTGCGTGTTGTTTTTTGCTCAATTAAAACGGCCAACAGTTTGTTGTTGTTTTTGAGTTTAAGTTTCGTTCTTTGTTTTTGTTTT
********************************************************************************************************...........((((................................................)).))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
.............GTTGTAGCTCTCGATGTCGTT........................................................................................................................................................................................................................ 21 0 1 5.00 5 4 0 0 1 0 0 0 0
.................................................................................................................................................................................................................TGTTGTTTTTGAGTT.......................... 15 0 4 2.25 9 9 0 0 0 0 0 0 0
...............................................................................................................................................................ATTAATGCTGCGTGTTGTT........................................................................ 19 0 1 2.00 2 0 0 0 0 2 0 0 0
.....................................................................................................................................................................................................................GTTTTTGAGTTTAAGTTTCGT................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................TTGTACCTACGGCTCCACACA.................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................TGTTGTTGTTTTTGAGTTTAA....................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TTGTTTTTGCGTTTAAG...................... 17 1 7 2.00 14 12 0 0 2 0 0 0 0
.......................................................................................................................................................TTCTCTTTATTAATGCTGCGTGTTGT......................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0
................................................................................................................................................................TTAATGCTGCGTGTTGTTTTT..................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................................................................................................CTGCTTTCCCGGCTTTTTCTC.............................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................TCGATGTCGTTGTTGTACCTA.............................................................................................................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................................................GGTTTTCTGCTTTCCCGGCTT.................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TTGTTGTTGTTTTTGAGTTTAAGT..................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AGTTTAAGTTTCGTTCTTTG.......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................TGCTGCGTGTTGTTTTTTGCT................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
................GCAGCTCTCGATGTCGTTGTT..................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................AATGCTGCGTGTTGTTTTTTG................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TCTCTTTATTAATGCTGCGTG............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................TGGGTTTTCTGCTTTCCCGGC...................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............TGTTGTAGCTCTCGATGTCGT......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................TTTCGTTCTTTGTTTTTGTTT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTTGTTTTTGAGTTTAAGTT.................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTTAAGTTTCGTTCTTTGTTT....... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................TTAATGCTGCGTGTTGT......................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................CAATTAAAACGGCCAACA............................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................GTGCTGCGTGTTGTTTTTTGCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................TCCACACATTAATTTTACGT...................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................GTTTTTGAGTTTAAGTTT................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................AGGTTTTGTGTTTTTCACTTT.......................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTGTTGTTGTTTTTGAGTTTA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..ACCCTGTTCTTGTTGTAGCTC................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................TGTCGTTGTTGTACCT............................................................................................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGTTGTTTTTGAGTT.......................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AACAGTTTGTAGTTGTTAGTGA............................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0
.................................................................................................................................GGCTATCTGCTTTCCCGG....................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1 0 0
................................................................................................................................................CGGCTTGTTCTCCTTATGAAT..................................................................................... 21 3 9 0.22 2 0 1 0 0 1 0 0 0
.................................................................................................................................GGTGATCTGCTTTCCCGG....................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0
..........................................................................................................AGGGTTTTGCGTTATTCA.............................................................................................................................. 18 2 10 0.20 2 0 0 0 0 0 2 0 0
.................................................................................................................................GGTGATCTGCTTCCCCGG....................................................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 3
..................................................................................................................................GGGTTCTGCATTCCCGGC...................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 2
.............................................................................................................................................................................TTGTTTTTTGCTCGGTTAAGA........................................................ 21 3 12 0.08 1 0 0 1 0 0 0 0 0
...............................................................................ATTCTATGTACGGAT............................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 0 0 1
................................................................................TTCTATGTACGGATGTTT........................................................................................................................................................ 18 2 14 0.07 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................CTCAGTATCAATGCTGCG............................................................................... 18 3 16 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................................TGGTTTTTCTGCTTTCTCGC....................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................TTTGAGATAAAGTTTCGT................ 18 2 19 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:16103464-16103713 + dsi_28976 TCTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAAATGCAATCGTTTAATTTAAGACAC-------ATGCCTAAAAAAA---AAGAAAACCCAA-AACGCAAA--------------AAGTGAAACCC-AAAAGA---CGAAAGGGCCGAAAAAGA----------------------------------------------------------------------GAAATAATTACGACGCACAAC-------------AAAAAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CAAA-GCAAGAAACA-AAAAC------------AAAA
droSec2 scaffold_17:819138-819387 + TCTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAAATGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA---AAGAAAACCCAA-AACGCAAA--------------AAGTGAAACCC-AAAAGA---CGAAAGGGCCGAAAAAGA----------------------------------------------------------------------GAAATAATAACGACGCACAAC-------------AAAAAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CAAA-GCAAGAAACA-AAAAA------------AAAA
dm3 chrX:16986115-16986378 + TCTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAAA--------------AAGTGAAACCC-AAAAGA---CGAAAGGGCCGAAAAAGAGGAAACC------C---------------------------------------A------------CAGAGAAATAATTACGACGCACAAT-------------AAAAAACGAGTTAA----TTTTGCCGGCTGTCAAACAACAACTAAAACTC-AAATT------CAAA-GCAAAAAACA-AAAACCAA---------AAAA
droEre2 scaffold_4690:7339097-7339354 + TCTGGGACAA---GAACAACAT-------CAAGAG-----------------------------------------------------------C------TACAACAA-------CATGGATACAGAGGTGTGTA-----ATTAAATTGCAATGGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCGA-AACGCAAA--------------AAGTGAAACCCCGAAAAA---TAAAAGGGCCGAAAAAGGGGAAACC------T---------------------------------------A-------------AGAGAAATAATTACGACGCACAAC-------------AAAAAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATG------CAAA-GCAAAAACCG-TAAAC------------CAAA
droYak3 X:15597082-15597403 + TCTGCGACAA---GAACAACAT-------CAAGAGCCAC-----------------------------C------ACAACAACAACAACAACAGC------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAAAAACCAAAAAGCCAAAAGTGAAACCA-AAAAAA---CAAAAGGGCCGAAAAAGGGGAAACC------T---------------------------------------A------------CAGAGAAATAATTACGACGCACAAATACAAAAAAAAAAAAAAAACGGGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CACA-GCTTAAAACACAAAACCAAAAAGAGAAGAAAA
droEug1 scf7180000409271:44185-44445 + TTTGGGACAACCAGAACAACAA-------CCAGA--------------------------------------------------AGAAGGACAAC------AACCACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTACGTTTAAGACCT-------ATGCCTAAAAAAAGAAAAGAAAA-CCAA-AACGCAA---------------AAGTGAAACCC-AAA---TA----AAAGGCCGAAAAAGAGCCAGCCAAAA-TT--------------------------------------------------------G---AAATTACGACGCACAAC-------------A--AAACGAGTTAA--T-TTTTGCCGGCTGTCGAACAACAACAA-AGCCCAAAAAT------CAAAGGCAGAAA------ACC------------CAAA
droBia1 scf7180000302421:1210983-1211215 - TCTGGGACCA---GAATAACAC-------C--------------------------------------------------------------AGC------AGGACGGA-------CATGGATGCCGAGGTGCGTA-----ATTAAATTGCAATCGTTTAATTTAAGACAC-------ATGCCCAAAA--A-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-ACA---CA-----AAAGCAGAAACAGGGCCGGCCAAAAGCT--------------------------------------------------------GA--AAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAA-AACTG-AAATT------CGAAAAC-------------C-C----------AAGC
droTak1 scf7180000413135:40410-40665 + TCTGGGACAA---GAACAACAC-------GAAGAGCCAC-----------------------AGCA------------------------A---C------AACAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAAATGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-AAA---TA-----AACGCCGAAAAAGAGCCAAGAAAAA---------------------------------------------------AAAACA--G-AAAAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CAAAGGCAAAAA--------T------------CAAA
droEle1 scf7180000491013:1144095-1144367 + TCTGGGTGAACAA---CAACAAAAAAGACTAAGAGCAAC-----------------------AGCA------------------------G---CAACATCAATAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-CAAGAA---AAAAAGAACCAAAAAAGAGGCAACA-------------------------------------------------------------AAAATATAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAA-AACTC-AAATT------CAAAGGCAAAAATCA-AAAAT------------AAAA
droRho1 scf7180000779333:160299-160540 + TCTGGGAGAAC------AACAAAAAAGCCTAAGAGC--------------------------AGCA------------------------G---C------AACAACAA-------CATGGATGCCGAGGTGTGTA-----ATTA-ATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-CAA---AA-----AAAACCGAAAAAGAGACAACA--------------------------------------------------------------AAAAATAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTT-TCAAACCAAAATAA-AGCTC-AAATT------CAAAAGCAGAA------------------------AC
droFic1 scf7180000454077:1192284-1192534 - TCTGAGACAACAT---CAATAAAAAAGA---CGACCAAC-----------------------AACA------------------------G---C------AACAACAA-------TATGGATGCCGAGGTGTGTA-----ATTAAATAGCAATCGTTTAATTTAAGATAC-------AGGCCGAAAAAGA----GGAAAACCCAAAAACGCAA---------------AAGTGAAACCC-AAA--ATA-----AAAGCCGAAAGAGCGCCAGA--------------------------------------------------------AATAC---AAAATAATTACGACGCACACA-------------A--AAACCAGTTAA----TTATGCCGGTTGTCAAACAACAACAA-ACCTT-AAATT------CAAAAGCAA--------------------------AA
droKik1 scf7180000302610:1246496-1246728 + TATTTGACAACAA---CAACAAAAGA---TAAAATCAACGACAAA---GACACAGAAGA---AGCG------------------------C---C------AACAACAA-------AATGGATGTCGAGGTGTGTA-----TTTTAATTGCAAGCGTTAAACTTAAGACAC-------ATGCCTAAAAAAA-----AAAAAACA-A-GATGAGAAAAAAATGAGAAAAAAAGTGAAACCG-AAA---TAAACA--AAACAAAAAATGAGA--------------------------------------------------------------------CCAACAATTTCGACGCA-----------------------------------TTTTCGGGGCTATACACA----------------------------------------------C------------ACAC
droAna3 scaffold_13334:759271-759450 - TCTTTAACAACAA---C---AT-------TAAGTACAACAACAAA---A-----AGACAAGCAGAA------------------------G---C------AACAACAA------AAATGGATGCCGAGGTGAGTA-----ATTAA--------------AATTAAGATAT-------AGCCCAAAAAAA--------AAACACAT---------------------------------------------------------------------------T----------------------------------------------------AAAAAAAATTATTACCA---------------------A--AAACCAGTTAT----TTTTGCCGGCA---AAACAAAAACAAAAACA--------------AAAAGCA--------------------------AAA
droBip1 scf7180000396733:389979-390222 - TCTTTAACAACAA---CAACAA-------GAACA--------------------GTACA---AGCA------------------------G---C------TACAACAA------AAATGGATGCCGAGGTGTGTA-----ATTAAAA--------------TTAAGATATGTACTATAACCCAAAAAGA--------ACTCTC-----TTTTT---------------ATATGTAACCC-AT-------------------------------T--CACATAAAAATTACGACGTATTTAAAAAAGAAAAAAAAAGAGCCAAG-----------------------A--CCCCCCAAA-------------A--AAACCAGTTAT--TTTTTTGCCGGCA---AAACAAAAGCAAAAGCAC---------------A-ACAAACACCA-AAGAC------------AGAA
dp5 XL_group1e:1139020-1139156 + TCTTTGACAACAA---CACA-GCAACGCACAGCAGC------AGCACCA-----GCAGC---AGCAGCAACAACAACAACAACAACAACAACAAC------AACAACGA-------AATGGATGCAGAGGTGTGTAGAGTGTTATAATTGAAACCGTTAAAATTAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_30:57310-57440 - TCTTTGACAACAA---CACA-GAAACGCACAGCAGC------AGCAGCA-----GCACC---AGCAGCA------GCAACAACAACAACAACAAC------AACAACGA-------AATGGATGCAGAGGTGTGTAGAGTGTTATAATTGAAACCGTTAAAATTAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:2453121-2453340 - TCTTTGACAACAA---CAACT---------------------------------------------------------------------G---C------AACAACAACGTGAAAAATGGATGCTGAGGTGTGTA-----ATAAATA--------------CAAAA-AAC---GAATAATCCCAAAATT--------TTAGTA-----ATTCT---------------ATATAAAAAAT-AT-------------------------------T--CAAATTAG----CCGGCAAATGAAAAAAAAAAAAAAACAAAACCAACTCCATAAA-------------------------------------------------GTCAATATCATTTGCAAGAG------------------CACGGAATTCAAGTGCAAA-GTCAGCCACG-AAAAC------------AACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAAATGCAATCGTTTAATTTAAGACAC-------ATGCCTAAAAAAA---AAGAAAACCCAA-AACGCAAA--------------AAGTGAAACCC-AAAAGA---CGAAAGGGCCGAAAAAGA----------------------------------------------------------------------GAAATAATTACGACGCACAAC-------------AAAAAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CAAA-GCAAGAAACA-AAAAC------------AAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................AAACCC-AAAAGA---CGAAAGGGC....................................................................................................................................................................................................................2113.00300000000003000000
...................................................................................................................................................................................................................................................AAGA---CGAAAGGGCCT..................................................................................................................................................................................................................1542.5010000000000010000000
..................................................................................................................................................................TTAAGACAC-------ATGCCTAAAAA..........................................................................................................................................................................................................................................................................................2011.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................AATAATTACGACGCACAAC-------------AA.................................................................................................2111.00100000000001000000
.....................................................................................................AGCAACAA-------CATGGATGCCGAG......................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................AGTTAA----TTTTGCCGGTTGTCAA.................................................................2211.00100000010000000000
.................AACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAAC............................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......CAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCA..............................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
......ACAA---GAACAACAT-------CGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAGTTAA----TTTTGCCGGTTGTC...................................................................2111.00100000000001000000
..............................................................................................................................................................................................................................................................AGGGCCGAAAAAGA----------------------------------------------------------------------GAAATAA..............................................................................................................................2111.00100000000000100000
...............ACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAA.............................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
..........................................................................................................................................................................................................................................AAACCC-AAAAGA---CGAAAGG......................................................................................................................................................................................................................1911.00100000000001000000
............................................................................................................A-------CATGGATGCCGAGG.....................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
.................................................................................................................................................................................................................................................AAAAGA---CGAAAGGGCCTC.................................................................................................................................................................................................................1860.17100000000001000000
...................................................................................................................................................................................................................................................AAGA---CGAAAGGGCCA..................................................................................................................................................................................................................15130.08100000000001000000
droSec2
TCTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAAATGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA---AAGAAAACCCAA-AACGCAAA--------------AAGTGAAACCC-AAAAGA---CGAAAGGGCCGAAAAAGA----------------------------------------------------------------------GAAATAATAACGACGCACAAC-------------AAAAAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CAAA-GCAAGAAACA-AAAAA------------AAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGC...............................................................................................................................................................................................................................................................................................................................................................................2212.0021010
TCTGGGACAA---GAACAACAT-------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........AA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------..................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...............................................................................................................................................TAAAATGCAATCGTTAAATT....................................................................................................................................................................................................................................................................................................................2011.0011000
...........................................................................................................................................................GTTAAATTTAAGACAC-------ATGCC................................................................................................................................................................................................................................................................................................2111.0011000
...............ACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCA..............................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.................AACAT-------CGAGAGCTA--------------------------------------------------------C------AGC...............................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................GAGAGCTA--------------------------------------------------------C------AGCAACAA-------C..................................................................................................................................................................................................................................................................................................................................................................1811.0010010
TCTGGGACAA---GAACAACAT-------CGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.....................................................................................................................................GTA-----ATTAAAATGCAATCGTTA........................................................................................................................................................................................................................................................................................................................2111.0011000
................CAACAT-------CGAGAGCTA--------------------------------------------------------C------AGC...............................................................................................................................................................................................................................................................................................................................................................................1911.0010010
........................................................................................................AACAA-------CATGGATGCCGAGC.....................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................CAT-------CGAGAGCTA--------------------------------------------------------C------AGCAAC............................................................................................................................................................................................................................................................................................................................................................................1920.5010010
..........................................................................................................CAA-------CATGGATGCCGAGCA....................................................................................................................................................................................................................................................................................................................................................1880.1310010
dm3
TCTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAAA--------------AAGTGAAACCC-AAAAGA---CGAAAGGGCCGAAAAAGAGGAAACC------C---------------------------------------A------------CAGAGAAATAATTACGACGCACAAT-------------AAAAAACGAGTTAA----TTTTGCCGGCTGTCAAACAACAACTAAAACTC-AAATT------CAAA-GCAAAAAACA-AAAACCAA---------AAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............AACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------C..................................................................................................................................................................................................................................................................................................................................................................27111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AGA---CGAAAGGGCCGAAAAAGAGGAAA......................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................T-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CA.................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
........................................................................................................AACAA-------CATGGATGCCGAG......................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AGA---CGAAAGGGCCGAAAAAGA...........................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACC------C---------------------------------------A------------CAGAGAAATAATTACG.........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..........................................................................................................CAA-------CATGGATGCCGAGGTGT..................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AAAAGA---CGAAAGGGCCGAAAG..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAGTTAA----TTTTGCCGGCTGTC...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AAGGGCCGAAAAAGAGGAAAC.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.CTGGGACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------..................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GAAACCC-AAAAGA---CGAAAGGG.....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AAAAGA---CGAAAGGGCCGAAAA..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................T-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGATGC..........................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................TGCAATCGTTAAATTTAAGAC..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGC...............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATTGCAATCGTTAAATTTAAGACAC-------A....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCTGTCAAACAACAACT........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................CCGAGGTGTGTA-----ATTAAATTG.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCACAAT-------------AAAAAACGAGTTAA----.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACAA---GAACAACAT-------CGAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGG.....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAAC............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................CAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CA.................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AACAA-------CATGGATGCCGAGGC....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CAACAA-------CATGGATGCCGAGC.....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........A---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------C.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................AACAT-------CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------C..................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ACAA-------CATGGATGCCGAGGTGT..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATGCCTAAAAAAA-----GAAAACCCAA-........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGC...............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................CAA-------CATGGATGCCGAGGTGTG.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.............GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGCA..............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TA--------------------------------------------------------C------AGCAACAA-------CATGGATGCCGAGGT....................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAAACGAGTTAA----TTTTGCCG.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATG...............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GCAACAA-------CATGGATGCCGAGC.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AGA---CGAAAGGGCCGAAAAAGAGGA........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACAA---GAACAACAT-------CGAGAGCTA--------------------------------------------------------C------AGC...............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................CGAGAGCTA--------------------------------------------------------C------AGCAACAA-------CATGGAT............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GAGAAATAATTACGACGCACA..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CAC-------ATGCCTAAAAAAA-----GAAAACC............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................A--------------------------------------------------------C------AGCAACAA-------CATGGATGCCG........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GTTAA----TTTTGCCGGCTGTCA..................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................CAACAA-------CATGGATGCCGAGCA....................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCTGGGACAA---GAACAACAT-------CAAGAG-----------------------------------------------------------C------TACAACAA-------CATGGATACAGAGGTGTGTA-----ATTAAATTGCAATGGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCGA-AACGCAAA--------------AAGTGAAACCCCGAAAAA---TAAAAGGGCCGAAAAAGGGGAAACC------T---------------------------------------A-------------AGAGAAATAATTACGACGCACAAC-------------AAAAAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATG------CAAA-GCAAAAACCG-TAAAC------------CAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............GAACAACAT-------CAAGAG-----------------------------------------------------------C------TACAACAA-------CATG...............................................................................................................................................................................................................................................................................................................................................................2811.0010001000
.................................AG-----------------------------------------------------------C------TACAACAA-------CATGGATC...........................................................................................................................................................................................................................................................................................................................................................1930.3310001000
droYak3
TCTGCGACAA---GAACAACAT-------CAAGAGCCAC-----------------------------C------ACAACAACAACAACAACAGC------AGCAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAAAAACCAAAAAGCCAAAAGTGAAACCA-AAAAAA---CAAAAGGGCCGAAAAAGGGGAAACC------T---------------------------------------A------------CAGAGAAATAATTACGACGCACAAATACAAAAAAAAAAAAAAAACGGGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CACA-GCTTAAAACACAAAACCAAAAAGAGAAGAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........A---GAACAACAT-------CAAGAGCCAC-----------------------------C------AC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAACCAAAAAGAGAAGAAA.2411.00100000010000
..............................AAGAGCCAC-----------------------------C------ACAACAACAACAACAA............................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.............................................................................................GC------AGCAACAA-------CATGGATGCCGAGCA....................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................AACAT-------CAAGAGCCAC-----------------------------C------ACAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
........................................................................................................AACAA-------CATGGATGCCGAGG.....................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.....................................................................................................AGCAACAA-------CATGGATGCCGA.......................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.....GACAA---GAACAACAT-------CAAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................C------ACAACAACAACAACAACAGC------AG................................................................................................................................................................................................................................................................................................................................................................................2330.33101000000000
........................................................................................................AACAA-------CATGGATGCCGACC.....................................................................................................................................................................................................................................................................................................................................................1930.33100000010000
......................................................................................AACAACAGC------AGCAACAA-------CAT................................................................................................................................................................................................................................................................................................................................................................2040.25101000000000
............................................................................CAACAACAACAACAACAGC------AGCAA.............................................................................................................................................................................................................................................................................................................................................................................24170.06100000010000
droEug1
TTTGGGACAACCAGAACAACAA-------CCAGA--------------------------------------------------AGAAGGACAAC------AACCACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTACGTTTAAGACCT-------ATGCCTAAAAAAAGAAAAGAAAA-CCAA-AACGCAA---------------AAGTGAAACCC-AAA---TA----AAAGGCCGAAAAAGAGCCAGCCAAAA-TT--------------------------------------------------------G---AAATTACGACGCACAAC-------------A--AAACGAGTTAA--T-TTTTGCCGGCTGTCGAACAACAACAA-AGCCCAAAAAT------CAAAGGCAGAAA------ACC------------CAAASizeHit CountTotal NormTotal
No Reads
droBia1
TCTGGGACCA---GAATAACAC-------C--------------------------------------------------------------AGC------AGGACGGA-------CATGGATGCCGAGGTGCGTA-----ATTAAATTGCAATCGTTTAATTTAAGACAC-------ATGCCCAAAA--A-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-ACA---CA-----AAAGCAGAAACAGGGCCGGCCAAAAGCT--------------------------------------------------------GA--AAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAA-AACTG-AAATT------CGAAAAC-------------C-C----------AAGCSizeHit CountTotal NormTotal
No Reads
droTak1
TCTGGGACAA---GAACAACAC-------GAAGAGCCAC-----------------------AGCA------------------------A---C------AACAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAAATGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-AAA---TA-----AACGCCGAAAAAGAGCCAAGAAAAA---------------------------------------------------AAAACA--G-AAAAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAAAAACTC-AAATT------CAAAGGCAAAAA--------T------------CAAASizeHit CountTotal NormTotal
No Reads
droEle1
TCTGGGTGAACAA---CAACAAAAAAGACTAAGAGCAAC-----------------------AGCA------------------------G---CAACATCAATAACAA-------CATGGATGCCGAGGTGTGTA-----ATTAAATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-CAAGAA---AAAAAGAACCAAAAAAGAGGCAACA-------------------------------------------------------------AAAATATAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTTGTCAAACAACAACAA-AACTC-AAATT------CAAAGGCAAAAATCA-AAAAT------------AAAASizeHit CountTotal NormTotal
No Reads
droRho1
TCTGGGAGAAC------AACAAAAAAGCCTAAGAGC--------------------------AGCA------------------------G---C------AACAACAA-------CATGGATGCCGAGGTGTGTA-----ATTA-ATTGCAATCGTTAAATTTAAGACAC-------ATGCCTAAAAAAA-----GAAAACCCAA-AACGCAA---------------AAGTGAAACCC-CAA---AA-----AAAACCGAAAAAGAGACAACA--------------------------------------------------------------AAAAATAATTACGACGCACAAC-------------A--AAACGAGTTAA----TTTTGCCGGTT-TCAAACCAAAATAA-AGCTC-AAATT------CAAAAGCAGAA------------------------ACSizeHit CountTotal NormTotal
No Reads
droFic1
TCTGAGACAACAT---CAATAAAAAAGA---CGACCAAC-----------------------AACA------------------------G---C------AACAACAA-------TATGGATGCCGAGGTGTGTA-----ATTAAATAGCAATCGTTTAATTTAAGATAC-------AGGCCGAAAAAGA----GGAAAACCCAAAAACGCAA---------------AAGTGAAACCC-AAA--ATA-----AAAGCCGAAAGAGCGCCAGA--------------------------------------------------------AATAC---AAAATAATTACGACGCACACA-------------A--AAACCAGTTAA----TTATGCCGGTTGTCAAACAACAACAA-ACCTT-AAATT------CAAAAGCAA--------------------------AASizeHit CountTotal NormTotal
No Reads
droKik1
TATTTGACAACAA---CAACAAAAGA---TAAAATCAACGACAAA---GACACAGAAGA---AGCG------------------------C---C------AACAACAA-------AATGGATGTCGAGGTGTGTA-----TTTTAATTGCAAGCGTTAAACTTAAGACAC-------ATGCCTAAAAAAA-----AAAAAACA-A-GATGAGAAAAAAATGAGAAAAAAAGTGAAACCG-AAA---TAAACA--AAACAAAAAATGAGA--------------------------------------------------------------------CCAACAATTTCGACGCA-----------------------------------TTTTCGGGGCTATACACA----------------------------------------------C------------ACACSizeHit CountTotal NormTotal
No Reads
droAna3
TCTTTAACAACAA---C---AT-------TAAGTACAACAACAAA---A-----AGACAAGCAGAA------------------------G---C------AACAACAA------AAATGGATGCCGAGGTGAGTA-----ATTAA--------------AATTAAGATAT-------AGCCCAAAAAAA--------AAACACAT---------------------------------------------------------------------------T----------------------------------------------------AAAAAAAATTATTACCA---------------------A--AAACCAGTTAT----TTTTGCCGGCA---AAACAAAAACAAAAACA--------------AAAAGCA--------------------------AAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................CACAT---------------------------------------------------------------------------T----------------------------------------------------AAAAAAAATTATTACCA---------------------A--AAAC............................................................................................2811.001010000
.......................................AACAAA---A-----AGACAAGCAGAA------------------------G---C------AAC...............................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.CTTTAACAACAA---C---AT-------TAAGTACAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.....................................................................................................AACAACAA------AAATGGATGCC.........................................................................................................................................................................................................................................................................................................................................................1920.501010000
droBip1
TCTTTAACAACAA---CAACAA-------GAACA--------------------GTACA---AGCA------------------------G---C------TACAACAA------AAATGGATGCCGAGGTGTGTA-----ATTAAAA--------------TTAAGATATGTACTATAACCCAAAAAGA--------ACTCTC-----TTTTT---------------ATATGTAACCC-AT-------------------------------T--CACATAAAAATTACGACGTATTTAAAAAAGAAAAAAAAAGAGCCAAG-----------------------A--CCCCCCAAA-------------A--AAACCAGTTAT--TTTTTTGCCGGCA---AAACAAAAGCAAAAGCAC---------------A-ACAAACACCA-AAGAC------------AGAASizeHit CountTotal NormTotal
No Reads
dp5
TCTTTGACAACAA---CACA-GCAACGCACAGCAGC------AGCACCA-----GCAGC---AGCAGCAACAACAACAACAACAACAACAACAAC------AACAACGA-------AATGGATGCAGAGGTGTGTAGAGTGTTATAATTGAAACCGTTAAAATTAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................ACAACAAC------AACAACGA-------AATGGATGCAGA.......................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................................................................................................................ATGCAGAGGTGTGTAGAGTGT.........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................GCAACAACAACAACAACAACAACAA............................................................................................................................................................................................................................................................................................................................................................................................25200.1020200000000
.............................................ACCA-----GCAGC---AGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000200000
......................................................GCAGC---AGCAGCAACAACAACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
............................................................................CAACAACAACAACAACAAC------AACAA.............................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
...............................................................GCAGCAACAACAACAACAACAACAACAA............................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
..................................................................GCAACAACAACAACAACAACAACAACAA.........................................................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
...............................................CA-----GCAGC---AGCAGCAACAACAACAA........................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..........................................................................AACAACAACAACAACAACAAC------AACAA.............................................................................................................................................................................................................................................................................................................................................................................26200.0510001000000
................................CAGC------AGCACCA-----GCAGC---AGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
............................................CACCA-----GCAGC---AGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
..............................................................AGCAGCAACAACAACAACAACAACAACC.............................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
.................................AGC------AGCACCA-----GCAGC---AGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...............................GCAGC------AGCACCA-----GCAGC---AGC......................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..........................................................C---AGCAGCAACAACAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
droPer2
TCTTTGACAACAA---CACA-GAAACGCACAGCAGC------AGCAGCA-----GCACC---AGCAGCA------GCAACAACAACAACAACAAC------AACAACGA-------AATGGATGCAGAGGTGTGTAGAGTGTTATAATTGAAACCGTTAAAATTAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................AAC------AACAACGA-------AATGGAT............................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................ACGA-------AATGGATGCAGAGGTGTGTAGA.............................................................................................................................................................................................................................................................................................................................................2611.001000001
..................................................................GCA------GCAACAACAACAACAACAAC------AA................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
............................ACAGCAGC------AGCAGCA-----GCACC---A........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droWil2
TCTTTGACAACAA---CAACT---------------------------------------------------------------------G---C------AACAACAACGTGAAAAATGGATGCTGAGGTGTGTA-----ATAAATA--------------CAAAA-AAC---GAATAATCCCAAAATT--------TTAGTA-----ATTCT---------------ATATAAAAAAT-AT-------------------------------T--CAAATTAG----CCGGCAAATGAAAAAAAAAAAAAAACAAAACCAACTCCATAAA-------------------------------------------------GTCAATATCATTTGCAAGAG------------------CACGGAATTCAAGTGCAAA-GTCAGCCACG-AAAAC------------AACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................ACAACAACGTGAAAAATGGATGC..........................................................................................................................................................................................................................................................................................................................................................2311.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................GTCAATATCATTTGCAAGAG------------------CAC.................................................2311.00100100
....................................................................................................................AATGGATGCTGAGGTGTGTA-----A.........................................................................................................................................................................................................................................................................................................................................2111.00100001
.....GACAACAA---CAACT---------------------------------------------------------------------G---C------AACAACAACGT.......................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.....................................................................................................AACAACAACGTGAAAAATGGATGC..........................................................................................................................................................................................................................................................................................................................................................2411.00100010
........................................................................................................AACAACGTGAAAAATGGATGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................2611.00100100
...........................................................................................................AACGTGAAAAATGGATGCTGA.......................................................................................................................................................................................................................................................................................................................................................2111.00100100
...................................................................................................................AAATGGATGCTGAGGTGT..................................................................................................................................................................................................................................................................................................................................................1811.00100010
................................................................................................................GAAAAATGGATGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................1830.33100010
.......CAACAA---CAACT---------------------------------------------------------------------G---C------AACAACA...........................................................................................................................................................................................................................................................................................................................................................................20200.05100010

Generated: 05/19/2015 at 04:20 AM