ID:

dsi_28953

 Coordinate:

3r:23727070-23727336 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.4 -21.3 -21.2

Flybase annnotation

exon [3r_23727337_23727507_-]; CDS [3r_23727337_23727507_-]; exon [3r_23726504_23727069_-]; CDS [3r_23726504_23727069_-]; intron [3r_23727070_23727336_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAACCAAAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCACCTCCAGCCACTTATGCACCACAAAGCTCTGTGCACCACAGAGCTCACTGCACCTCAAATAGCACTCACCCACCCACAAATGCACCTTGCAATCTGCCCACACCCAAATCGCTTGTTCTCGTAGAAACTTTGAAGTAGCATCTGTAGTAGTTGCGTTAGTGCACCTTCACTAGACTTAAGTCTGCACGGGTTCTTGGGAGTGAAATGTCTCACTGAAAAAGCTCTCCTGGCTGACTCGCAATCCCCTTCTCTTGCAGCGGAACCCAACAAGCAGGACAACGAAATTGGACAAAATCCGTGCGATACC
***********************************************************************************************************************************************************************************...........(((((..((((.((((.....))))...))))..))))).(((((....)))))...(((..(((...(((((......)))))....)))..)))..******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................................................................................................................................AGCAGGACAACGAAATTGGAC................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CACTGAAAAAGCTCTCCT............................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................CGTAGAAACTTTGAAGTAG......................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................CCTTCGAGGCATGCACGAAC....................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......AAACAACTTCCGATCCTTCGAGGC................................................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GCAGGACAACGAAATTGGACAA............... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........AACTTCCGATCCTTCGAGGC................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................AACAAGCAGGACAACGAAATTGGAC................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................ACGAAATTGGACAAAATCCGT........ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................TTCGAGGCATGCACGAACC...................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................AATGTCTCACTGAAAAAGCTCTCC................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGTGCACCTTCACTA....................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................TAAGTCTGCACGGTT.................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................AAATAGCTTGTTCTC........................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................AGTAGCAACGGTAGTAGAT........................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................GTGGTAGTCGCATTAGTGC................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................TCGGAACCCTACAAGC................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................GGGTTATTGCGAGTGA........................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................GGGAGTGAAGAGTCTC................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................AAAAGTTCTCCGGGCTGCC........................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTTGGTTTTGTTGAAGGCTAGGAAGCTCCGTACGTGCTTGGTTACGGCTGCATTCGGGGTGGAGGTCGGTGAATACGTGGTGTTTCGAGACACGTGGTGTCTCGAGTGACGTGGAGTTTATCGTGAGTGGGTGGGTGTTTACGTGGAACGTTAGACGGGTGTGGGTTTAGCGAACAAGAGCATCTTTGAAACTTCATCGTAGACATCATCAACGCAATCACGTGGAAGTGATCTGAATTCAGACGTGCCCAAGAACCCTCACTTTACAGAGTGACTTTTTCGAGAGGACCGACTGAGCGTTAGGGGAAGAGAACGTCGCCTTGGGTTGTTCGTCCTGTTGCTTTAACCTGTTTTAGGCACGCTATGG
*******************************************************************************...........(((((..((((.((((.....))))...))))..))))).(((((....)))))...(((..(((...(((((......)))))....)))..)))..*********************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
...................................................ATTCGAATTGGAGGTCGGTGA....................................................................................................................................................................................................................................................................................................... 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0
............................CGGAAGTGCTTGCTTACGGCT.............................................................................................................................................................................................................................................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................ATTCGAATTGGAGGTCGGTG........................................................................................................................................................................................................................................................................................................ 20 3 9 0.89 8 8 0 0 0 0 0 0 0 0
...........................................................................................ACGTGCTGTCTCGAGT.................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0
........TGCAGAAGGCTAGGAAGCT.................................................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CAGGAGCATATTTGAAACCT............................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TTAGAGGAGGAGAACGTCGGCT.............................................. 22 3 5 0.20 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................TAGGGGAAGAGAACA.................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................ATGTTTACGTGGAACGTA....................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................AGGACCGACAGAGCCTTA................................................................. 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................AGGAAGTGATCGGAAT................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 0 0 2 0
........TGTTGATGTCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTGAAGCTTCAGCGCAGA.................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 1
...........................................................TGGAGGTCGGTGAGT..................................................................................................................................................................................................................................................................................................... 15 1 15 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CAGGAGCATATTTGAAACC.............................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TTGGGTTGTGAGTCCTG.............................. 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................GGGAATAGAACTTCGC................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.....................................................TCGGGGTGGGGGTCAGT......................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:23727020-23727386 - dsi_28953 CAACCAAAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTCCAGCCACT---TATGCACCACA-AAGCTCTG----------TGCACCACAGAGCTCACTGCA---------------CCTCAAATAGC-----------------------------------------ACTCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGT--TCTCGTAGAAAC---TTTGAAGTAGCATC-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGT-CTGCACGGGTTC-TT----GGGAG------T-------GAAATGTC-T-----------------CA--CTGAAAAAGCTCT--CCTGG-----------------CTGACTCGCAA-T-------------CCCCTTCTCT-TGC---AGCGGAA------CCCAACAAGCAGGAC---AACGAAATTGGACAAAATCCGTGCGATACC
droSec2 scaffold_22:952202-952568 - CAACCAAAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTTCAGCCACT---TATGCACCACA-AAGCTCTG----------TGCACCACAAAGCTCACTGCA---------------CCTCAAATAGC-----------------------------------------ACTCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTCGTAGAAAC---TTTGAAGAAGAATC-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGT-CTGCACGGGTTC-TT----GGGAG------T-------GAAATGTC-T-----------------CA--CTGAAAATGCTCT--CCTGG-----------------CTGACTCGCAA-T-------------CCCCTTCTCT-TGC---AGCGGAA------CCCAACAAGCAGGAC---AACGAAATTGGACAAAATCCGTGCGATACC
dm3 chr3R:24348933-24349298 - CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTACAGCCACT---TATGCACCACA-AAGCACTG----------TGCACCACAGAGCTCACAGCA---------------CCTCAATTAGC-----------------------------------------ACCCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTCGTAGAAAC---TTTGAAGTAGCATC-----TATAGTAG--T--TGCG-T---TAGTGCACCTTCACTAAACTTAAGT-CTGCACGGGTTC-TT----GGGAA------T-------GGAGTGTC-T-----------------CA--CTGAAAATGCCCT--CTTGG-----------------CTGACTCGCAA-T-------------CCCCT-TTCT-TGC---AGCGGAA------CCCAACAAGCAGGAC---AACGAAATTGGACAAAATCCGTGCGATACC
droEre2 scaffold_4820:3686394-3686761 + CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTACAGCCACC---TACGCACCACA-AAGCTCTG----------TGCTCCACAGAGCTCACTGCA---------------CCTCAAAAAGC-----------------------------------------ACCCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTTGTAGAAAC---TTTGAAGTAGCATT-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGT-CTGCACGGGTTC-TT----GGGAA------T-------GGAATGTAAA-----------------AG--CTGTGAAAGCTGT--CCTTG-----------------CTGATCCGCAA-T-------------CCCCGTCTCT-TGC---AGCGGAA------CCAAACAAGCAGGAC---AACGAAATTGGACAGAACCCGTGCGACACC
droYak3 3R:22148174-22148542 + CAACCAGAACAACTTCCGATCCTACGAGGCATGCACGAATCAATGCCGACGTAAGCCCCACTTCTCCAGCCACT---TATGCACCACA-AAGCTCTG----------TGCACCACCGAGCTCACTGCA---------------CCTCAAAATGC-----------------------------------------ACCCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTTGTAGAAAC---TTTGAAGTAGCACC-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGA-CTGCACGGATTC-TT----GGGAA------T-------GGAGTGTC-T-----------------CG--CTGTAGTAGCTTT--CCTGG-----------------CTGATTCGCAA-T-------------CCCCTTCTCT-TGC---AGCGGAA------CCAAACAAGCAGGAC---AACGAAATTGGACAAAGTCCGTGCGACACC
droEug1 scf7180000409787:1231671-1232065 + CAACCAGAACAACTTCCGATCCTTCGAGGCATGCATGAACCAATGCCGACGTAAGCCCTTC--CTCCAGACAAT---AATGCACCACAAAAGCTCTC----------TGCACCATAGAGCTCACTGCA---------------CCACAGAGCTCACTGCACCATTGAGCTCACTGCACCA-------AA------AACCAC-------C----CA---ACCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AACCGCTTGT--TCTAGTAGAAAT---TTTGAAGTAGCATC-----TGTAGTAT--T--TGCG-A---TTTTGCACTTTCACTAGACTTAAGA-CTGCACGGGTTC-TC----GGGAA------T-------GGAAGACC-T-----------------CT--CTAGGGAATTTT---TCTTA-----------------CTAAATCAAGT-T-------------CCTCT-CTCTTTAT---AGCGGAC------ACGAACGATCAAGAC---AACGGAATTGGACAGAACCCGTGCGATAAC
droBia1 scf7180000302075:2436218-2436576 + CAACCTGAACAACTTCCGATCCTTCGAGGCATGCATGAGCCAATGCCGACGTAAGACCCAC--CACCAGCCACCACTACTGCACCACA-AAGCTCAC----------TGCACCACAGAGCTGACTGCA---------------CC-----------------------------------------------------CAC-------C----CA---CCCATGA---ATGCACCT---TGCAAT----CTGCC-CTCACCC------A------------AACCGCTTGT--TCTCGTAGAATC---TTTAGAGTAGCATC-----TGTAATAG--T--TGCGAT---TAGTGCACTTTCACTAGACATAAGA-ATGCACGGGTTT-TG----GGGAA------T-------GGAAGATC-T-----------------CT--CTGTCAAGTCCGG--CTTAA-----------------CTGAATCGTAA-T-------------TCCCCTCTCT-TCC---AGCGGAT------GGCAACGACCTAGAC---AATGGTATTGGACAGAACCCTTGCGATTCC
droTak1 scf7180000415383:111773-112122 + CAATCAGAACAACTTCCGATCCTTCGAGGCATGCATGAACCAATGCCGACGTAAGCCCCTC---TC---------------CACCAAA-AAGCA--ACA--CTCTTTTGCA--------------------------------CCACAAAAAGC-----------------------------------------ACCCAA-------C----CACCCACCACGA---ATGCACCTTTTTGCAAA----CTGCA-CACACCC------A------------AAACGCTTT---TTAAGTAGAATA---TTTAGAGTAGCATC-----TGTAGTAG--T--TGCGAT---TAGTGCACTTTCACTAGACTTAAGA-CTGCACGGGTTT-TG----GGGAA------A------TGGAAGATA-T-----------------AT--CTGTCTAGACAAA--ACTTA-----------------CTGATTTGAAA-T-------------TGCTATTTCT-TAC---AGCGGAA------TCGAACGATGCAGAC---AACGCTATTGGACAGAACCCTTGTGATACC
droEle1 scf7180000491280:3587225-3587551 + CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCA--------------CT---TTTGCAACACA-GAGCACTC----------T-----------CACTCTGCA---------------CCTCAAA----------------------------------------------TCCAC-------C----CA---ACCACGA---ATGCACCT---TGCA----------------CCC------A------------AAACGCTTGT--TTTCGTAGAAAC---TTTGATTTAGCATA-----TGTAGT----T--TGCGAT---TAGAGCACTTTCACTAGATTTAAGA-CTGCACGGGTATCTT----GGG-C------T-------GGAAGATC-A-----------------CG--CTGTCATAGTTAA--CGCAA-----------------CTTAATGGTAA-T-------------ATCCTCCTCT-TTC---AGCCGAA------ACGAACGATTTAGAC---AATGGAATTGGACGTAGTCCGTGCGATACC
droRho1 scf7180000779501:65035-65383 - CAACCAGAACAACTTCCGAACCTACGAGGCATGCACGAACCAATGCCGACGTAAGCCA--------------CT---TTTGTTCCACA-GAGCACTC----------AGCACT---CAGCACC--------------TCTGCACCTCAAA-------------------------------TCCACA------------------AATCCACCCA---ACCACGA---ATGCACCT---T-----------GCT-CACACCC------A------------AACCGCTTGT--TTTCGTAGAAAAT--TTTGAAGTAGCATT-----TGTAGT----T--AGCGAT---TAAAGCACTTTCACTAGACCTAAGA-TTGCACGGGTATCTT----GGG-A------T-------GGAATAGC-T-----------------CT--CTCGCGAAACTAA--CATAA-----------------CTGAATGGTAA-T-------------CTGCTCCTCT-TCC---AGCCGAA------ACCAATGATTTGGAC---AATGGAATTGGAAGCAACCCGTGCGATTCA
droFic1 scf7180000453581:269177-269522 + CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCC----CACCAGACACTTCTTCTGCACCACA-GAACACTC----------CGCACC---------TCTGCA---------------CCTTACAAACC-----------------------------------------AC----------------CA---ACCACGA---ATGCACCC---TGCACT----CCGCT-CAC-CCC------A------------AACTGCTTGA--TTTCGTAGATAC---TTTGAAGTAGCATT-----TGTAGT-------TGCGAT---TAGTGCACTTTCATTAGACTTAAGT-TAGCACGGGTTACTC----GGG--------T-------GGAAGATC-A-----------------TC--CTGTTTAAGCATT--ACTTA---------------ACCCCATTCGAA--------------------TCATCT-TTT---AGCCGAA------ACCAACGACCTGGAC---AACGGAATTGGACAAAGTCCGTGCGATACT
droKik1 scf7180000302256:113572-113935 - CAACCAGAACAACTTCCGGTCGTTCGAGGCATGCACGAATCAGTGCGGAAGTAAGCCTGCC--CTCCAACCTC------TGCACCT----------ATG--CACCTCTGAACCACAGAGCACTCTGCA---------------CC-----------------------------------------------------C---------A----CA---CCCCCGA---ATGCACCT---TGCACTTAGACCGCT-CACCCGA------AA-----------ACCTGCTTGA--CTTTGTAGA-AC---TTTGAAATAGCATC-----CGTAGA-T--T--T--GAG---TAGAGCACTTTCACTAGGCTTAAGACTTGCACGGGTTA-C-----GGGAA------T-------GGGGACAC-T-----------------TG--ATTTCGATGCTGT--CTTTA-----------------CTGAACTGCTC-TA-----T--TT--CACGCTCTCC-TTTCGCAG---GACCCGTCGACAATAACAACGCCAATAACAACGTGGAACAGGGTCTGTGCGACAGC
droAna3 scaffold_13340:17152552-17152912 - CAACCAGAACAACTTCCGGTCATTCGAGGCATGCACAAATCTCTGCGGAAGTAAGCCTGCC--TTCCGGCCACC---T---CTCTCTG-AAACTCTC----------TGCACCACAGAGCACTCAGCA---------------CC----------------------------------CACCCACA------------------ACTCCAC----------CCA---GCGCACCC---AGCACC----CCACT-CACCCTT------A------------ATTTGCTTGA--ATTAGTAGTTAT---CTTGAAATAGCATC-----AGTAGT----T--TGAA-T---TTTGGCACTTTCAAGAGTCTTAAGA-TTGCACGGGTAT-AA----CGGTT------G-------GGAATGTT-T-----------------TG--CCTTTG-TGTTCC--CCATA-----------------TTTATTTGCCA-TA------------ATTCTTCCCA-ACCCACAG---ACCCTGTTGAAAACGATACTAAC---AACGAGATTGGCCAGGGTCAGTGCGACAGC
droBip1 scf7180000396424:655186-655541 - CAACCAGAACAACTTCCGGTCGTTCGAGGCATGCACGAGTCTCTGCGGAAGTAAGCCTGCC--TTCCGGCCACC---TTT---CTCTG-ACTCTCTC----------TGCACCACAGAGCACTCAGCA---------------CC--------C--------------------------ACCCACC------------------ACTCCAC----------CCA---GCGCACCC---AGCACC----CCGCA-CACCCTT------A------------CTTTGCTTGA--CTTAGTAGTTGC---CTTGAAAAAGCATC-----AGTAGT----T--TGAA-C---TTTAGCACTTTCAATAGGCTTAAGA-TTGCACGGGTAT-AA----GGGTT------G-------GGAATGTT-C-----------------TG--C-CTCGGA-------CCACA-----------------TTTAATTCAAA-TA------------TTTCTTCTTT-AGATACAA---ACCCTGTTGAGAACGAGACCAAC---AACGAGATCGGCCAAGGTCAATGCGACAGC
dp5 2:10177504-10177860 + CAATCAGAACAACTTCCGTTCGTTTGAGGCATGCACGAATCTCTGCGGAAGTAAGCCTGCA--CACCAGCTAA-----ATGCACTCCA------CTC----------TGCACCCCAGAACAC----------------------CACC-------------------------------ACCCTCCA------------------AATGCAT-------C---CAATTTCGCACCT---TGCACT----CTGCC-CACCTTC------A------------ACCTGCTTGATTTTTAGTAGAACTA--TTAGAAGTAGCATC-----AGTAGTCT--T-----GATTAGTAGTGCACTTTCACTAGCTCTAAGA-TTGCACGGGTCT-TT----GGGAT------A------T-------C--TTCAGAATGTTGGTCTG-----------------CACAAGG-----------------CTGATCCTCTA-C---------GT--TCC-GTTC----CCCACAG---GGCCCGTTGACAACGAGATTGAC---AACGAAATTGGACAGGGTCGCTGCGAGAGC
droPer2 scaffold_0:10303942-10304299 - CAATCAGAACAACTTCCGTTCGTTTGAGGCATGCACGAATCTCTGCGGAAGTAAGCCTGCA--CACCAGCTAA-----ATGCACTCCA------CTC----------TGCACCCCAGAACAC----------------------CACC-------------------------------ACCCTCCA------------------AATGCAT-------C---CAATTTCGCACCT---TGCACT----CTGCC-CACCTTC------A------------ATCTGCTTGATTTTTAGTAGAACTA--TTAGAAGTAGCATT-----AGTAGTCT--T-----GATTAGTAGTGCACTTTCACTAGCTCTAAGA-TTGCACGGGTCTTTT----GGGAT------A------T-------C--TTCAGAATGTTGGTCTA-----------------CACAAGG-----------------CTGATCCTTTA-C---------GT--TCC-GTTC----CCCACAG---GGCCCGTTGACAACGAGATTGAC---AACGAAATTGGACAGGGTCGCTGCGAGAGC
droWil2 scf2_1100000004902:9026460-9026814 - CAATCAGAACAATTTCCGCTCCTTTGAAGCATGCACGAATCAATGCGGAAGTAAGCCTCTC--CAAGAGCTT------------------------C----------TACACCAACTTGCACCTTGTACCTTGCA--------CT-----------------------------------------------------------------------------------TTGCACCC---TG-----------CA-CCCATCTTTTGCCCACCTTAA-TTTAGAATGCTTGA--TTCAGTAGAAAAATAGTTGAAGTA--------------GTT------TTAG-TTTCTTCTGCACTTTCATTACCCTTAAGT-TTGCACGGGTTC-TTCTTCGGG--------CGGGATAT-------A--CTAAAAGTA------------------------------AATTGAAGCATTTATCATAATAAATCTAATTA-CAAAATTAATATCG----TC----TTCACAG---AGCCTGTCGACAATGAGATTGAT---AATGAAATTGGCCAAAGTCGCTGCGAGAGT
droVir3 scaffold_12822:3793981-3794355 - dvi_2757 CAACCAGAACAACTTCCGTTCCTTTGAAGCATGCACAAATCAATGCGGAAGTAAGCCTGC------------------------CACA-GAGCTG-ACA--CTT---AATACCAA---------------CTGCACCCGA---------------------------GCACCCTGCACTC-------AAATCAATACCCACCCCAAATACAC-------C---AAATTCTGCACCC---TG-----------CCTCACT-ATCTTCACAA-----ACTTCAAAATGCTTGA--TTG-GT-TAAGC---GTAGAAGTAGCATT-CCTTAGTAGAAG--TACTTAG-T---TAGAGCACGTTCACTAGACATAAGC-TTGCACGCAAC--TT----GGTAGTTTAGCT-------GAATTAC--------------------CG--CTGCGAATA-----CCAAAA-----------------CTGATC---------------------ACTTTTACT-TTTCACAG---AGCCAGTCGAGAATGAGATCGGC---AACGAAATCTCTCCCAGCCGGTGCGAAACC
droMoj3 scaffold_6540:17103195-17103563 - CAACCAGAACAACTTCCGTTCCTTTGAAGCATGCACAAATCAATGCGGAAGTAAGCTTG----------------------CTCCACA-AATCACAC-----TT---TATACCAA---------------CTGCACTCGA---------------------------GCACTCTGCACTC-------AATTTATTACCCACC------C----CA---CACACAA--------TTT---TGCACT----CTGCTTCACCTTC------AA-----ATTTGGGAATGCTTAT--TT-AGTT-AAGC---GTAGAAGTAGTTTTTCCCAAGTAGAATATTT-ATTGAG---TAGTGCACTTTCACTAGATATAAGA-TTGCACGAATAT-TT----TGTAGATTAGCT-------GGGTAGT--------------------CTCTGTATCG-------AACAAAT-----------------CTGAGT------T-------------TCCTATTT----TTCACAG---AGCCCATCGACAACGAGATCGTC---AACGAAATCTCACCCAGCCGTTGCGAAACG
droGri2 scaffold_14906:1386438-1386780 - CAACCAAAACAATTTCCGTTCCTTTGAAGCATGCACAAATCAATGCGGAAGTAAGCCTGC------------------------CACA-AAGCTTTA-AAACC----TGCACC------------------------CGTGCACCACACA-------------------------------CACACAAATTCAATACCC---------------A---CAC---AATTCTGCACCT---AA----------TCC-TACTTTG------A------------AACTGCTTGT--TCGA--TTAAGC---GTAGACATATCACT-CTTCAGTAGTAT--T---TAG-T---TAGTGCACCCTCACTAGACTTAAGA-TTGCACGCAAAT-TT----GT-AGTCTAGCT-------GGGCTGT--------------------AG--CTTTCGAG-----AACAAAT-----------------CTGAGT------A-------------TACAACTT----TTCACAG---CCCCTGTCAACAATGAGGGATCC---AATGAGGTATCTCCCAACCGCTGCGAGGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACCAAAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTCCAGCCACT---TATGCACCACA-AAGCTCTG----------TGCACCACAGAGCTCACTGCA---------------CCTCAAATAGC-----------------------------------------ACTCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGT--TCTCGTAGAAAC---TTTGAAGTAGCATC-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGT-CTGCACGGGTTC-TT----GGGAG------T-------GAAATGTC-T-----------------CA--CTGAAAAAGCTCT--CCTGG-----------------CTGACTCGCAA-T-------------CCCCTTCTCT-TGC---AGCGGAA------CCCAACAAGCAGGAC---AACGAAATTGGACAAAATCCGTGCGATACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAC---AACGAAATTGGAC.................2113.00300300000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--CTGAAAAAGCTCT--CCT...........................................................................................................................1811.00100000100000000000
........................................................................................................................................................................................................................................................................................................CGTAGAAAC---TTTGAAGTAG...........................................................................................................................................................................................................................................................................1911.00101000000000000000
....................CCTTCGAGGCATGCACGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
......AAACAACTTCCGATCCTTCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAC---AACGAAATTGGACAA...............2211.00100100000000000000
..........AACTTCCGATCCTTCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCAGGAC---AACGAAATTGGAC.................2511.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAATTGGACAAAATCCGT........2111.00100001000000000000
......................TTCGAGGCATGCACGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATGTC-T-----------------CA--CTGAAAAAGCTCT--CC............................................................................................................................2411.00100100000000000000
droSec2
CAACCAAAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTTCAGCCACT---TATGCACCACA-AAGCTCTG----------TGCACCACAAAGCTCACTGCA---------------CCTCAAATAGC-----------------------------------------ACTCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTCGTAGAAAC---TTTGAAGAAGAATC-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGT-CTGCACGGGTTC-TT----GGGAG------T-------GAAATGTC-T-----------------CA--CTGAAAATGCTCT--CCTGG-----------------CTGACTCGCAA-T-------------CCCCTTCTCT-TGC---AGCGGAA------CCCAACAAGCAGGAC---AACGAAATTGGACAAAATCCGTGCGATACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAC---AACGAAATTG....................1811.0010010
.....................CTTCGAGGCATGCACGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAC---AACGAAATTGGA..................1811.0010010
.......AACAACTTCCGATCCTTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTACAGCCACT---TATGCACCACA-AAGCACTG----------TGCACCACAGAGCTCACAGCA---------------CCTCAATTAGC-----------------------------------------ACCCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTCGTAGAAAC---TTTGAAGTAGCATC-----TATAGTAG--T--TGCG-T---TAGTGCACCTTCACTAAACTTAAGT-CTGCACGGGTTC-TT----GGGAA------T-------GGAGTGTC-T-----------------CA--CTGAAAATGCCCT--CTTGG-----------------CTGACTCGCAA-T-------------CCCCT-TTCT-TGC---AGCGGAA------CCCAACAAGCAGGAC---AACGAAATTGGACAAAATCCGTGCGATACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATTGGACAAAATCCGTGCG.....2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GAACAACTTCCGATCCTTCGAGGCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTCGAGGCATGCACGAACCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................T----CTGCC-CACACCC------A------------AATCGCTTGC--TCT.................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAACTTCCGATCCTTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AACGAAATTGGACAAAATC...........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAAGCAGGAC---AACGAAATTGGA..................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCTTCGAGGCATGCACGAACCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACTTCCGATCCTTCGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGTTC-TT----GGGAA------T-------GGAGTGTC-T-----------------CA--C............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGTTC-TT----GGGAA------T-------GGAGTGTC-T-----------------C................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGGAC---AACGAAATTGGACA................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTC-T-----------------CA--CTGAAAATGC...................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAC---TTTGAAGTAGCATC-----TA................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAC---AACGAAATTGGACAAATC............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCT--CTTGG-----------------CTGACTCGC...............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGGACAAAATCCGTGC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AACGAAATTGGACAAA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACTTCCGATCCTTCGAGGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AACGAAATTGGACAAAATCCGTGCG.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGCCCT--CTTGG-----------------CTGACT..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CCACT---TATGCACCACA-AAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGATCCTTCGAGGCATGCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................CTTGC--TCTCGTAGAAAC---TTTGAAGTA............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............CTTCCGATCCTTCGAGGCATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGGAC---AACGAAATTGGACAAAA.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGGAC---AACGAAAT......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCACGAACCAATGCCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................C-TT----GGGAA------T-------GGAGTGTC-T-----------------CA--CTGAA........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA------CCCAACAAGCAGGAC---AA............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGAACAACTTCCGATCCTTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GTTC-TT----GGGAA------T-------GGAGTGT.....................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CGGGTTC-TT----GGGAA------T-------GGA.........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAATTGGACAAAATCCGTGCGATA..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAACTTCCGATCCTTCGAGGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAACAAGCAGGAC---AACGTC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............CCGATCCTTCGAGGCATGCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCGGAA------CCCAACAAGCAGGAC---AA............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCCGATCCTTCGAGGCATGCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC-T-----------------CA--CTGAAAATGCCCT--CTTG..........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGGAC---AACGAAATT.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GAA------T-------GGAGTGTC-T-----------------CA--CTGAAAATG....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACAAAATCCGTGC......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAATCCGTGCGATACC2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGGAC---AACGAAATTGGACAAAATCC..........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAC---AACGAAATTGG...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................TCGAGGCATGCACGAACCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GTTC-TT----GGGAA------T-------GGAGTC......................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCCAC--CTACAGCCACC---TACGCACCACA-AAGCTCTG----------TGCTCCACAGAGCTCACTGCA---------------CCTCAAAAAGC-----------------------------------------ACCCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTTGTAGAAAC---TTTGAAGTAGCATT-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGT-CTGCACGGGTTC-TT----GGGAA------T-------GGAATGTAAA-----------------AG--CTGTGAAAGCTGT--CCTTG-----------------CTGATCCGCAA-T-------------CCCCGTCTCT-TGC---AGCGGAA------CCAAACAAGCAGGAC---AACGAAATTGGACAGAACCCGTGCGACACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......GAACAACTTCCGATCCTTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0031000200
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATTGGACAGAACCC..........1811.0010100000
..........AACTTCCGATCCTTCGAGGCATGCACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA------CCAAACAAGCAGGAC---AACGAAATTG....................2811.0010001000
...........ACTTCCGATCCTTCGAGGCATGCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAC---AACGAAATTGGA..................2011.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACAGAACCCGTGCGACAC.2311.0010000010
droYak3
CAACCAGAACAACTTCCGATCCTACGAGGCATGCACGAATCAATGCCGACGTAAGCCCCACTTCTCCAGCCACT---TATGCACCACA-AAGCTCTG----------TGCACCACCGAGCTCACTGCA---------------CCTCAAAATGC-----------------------------------------ACCCAC-------C----CA---CCCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AATCGCTTGC--TCTTGTAGAAAC---TTTGAAGTAGCACC-----TGTAGTAG--T--TGCG-T---TAGTGCACCTTCACTAGACTTAAGA-CTGCACGGATTC-TT----GGGAA------T-------GGAGTGTC-T-----------------CG--CTGTAGTAGCTTT--CCTGG-----------------CTGATTCGCAA-T-------------CCCCTTCTCT-TGC---AGCGGAA------CCAAACAAGCAGGAC---AACGAAATTGGACAAAGTCCGTGCGACACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAATTGGACAAAGTC...........1912.00200200000000
.AACCAGAACAACTTCCGATCCTACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
........ACAACTTCCGATCCTACGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGACAAAGTCCGTGCGACA..2411.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AACGAAATTGGACAAAGTCCGTGC......2611.00100010000000
............................GCATGCACGAATCAATGCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........ACTTCCGATCCTACGAGGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
droEug1
CAACCAGAACAACTTCCGATCCTTCGAGGCATGCATGAACCAATGCCGACGTAAGCCCTTC--CTCCAGACAAT---AATGCACCACAAAAGCTCTC----------TGCACCATAGAGCTCACTGCA---------------CCACAGAGCTCACTGCACCATTGAGCTCACTGCACCA-------AA------AACCAC-------C----CA---ACCACAA---ATGCACCT---TGCAAT----CTGCC-CACACCC------A------------AACCGCTTGT--TCTAGTAGAAAT---TTTGAAGTAGCATC-----TGTAGTAT--T--TGCG-A---TTTTGCACTTTCACTAGACTTAAGA-CTGCACGGGTTC-TC----GGGAA------T-------GGAAGACC-T-----------------CT--CTAGGGAATTTT---TCTTA-----------------CTAAATCAAGT-T-------------CCTCT-CTCTTTAT---AGCGGAC------ACGAACGATCAAGAC---AACGGAATTGGACAGAACCCGTGCGATAACSizeHit CountTotal NormTotal
No Reads
droBia1
CAACCTGAACAACTTCCGATCCTTCGAGGCATGCATGAGCCAATGCCGACGTAAGACCCAC--CACCAGCCACCACTACTGCACCACA-AAGCTCAC----------TGCACCACAGAGCTGACTGCA---------------CC-----------------------------------------------------CAC-------C----CA---CCCATGA---ATGCACCT---TGCAAT----CTGCC-CTCACCC------A------------AACCGCTTGT--TCTCGTAGAATC---TTTAGAGTAGCATC-----TGTAATAG--T--TGCGAT---TAGTGCACTTTCACTAGACATAAGA-ATGCACGGGTTT-TG----GGGAA------T-------GGAAGATC-T-----------------CT--CTGTCAAGTCCGG--CTTAA-----------------CTGAATCGTAA-T-------------TCCCCTCTCT-TCC---AGCGGAT------GGCAACGACCTAGAC---AATGGTATTGGACAGAACCCTTGCGATTCCSizeHit CountTotal NormTotal
No Reads
droTak1
CAATCAGAACAACTTCCGATCCTTCGAGGCATGCATGAACCAATGCCGACGTAAGCCCCTC---TC---------------CACCAAA-AAGCA--ACA--CTCTTTTGCA--------------------------------CCACAAAAAGC-----------------------------------------ACCCAA-------C----CACCCACCACGA---ATGCACCTTTTTGCAAA----CTGCA-CACACCC------A------------AAACGCTTT---TTAAGTAGAATA---TTTAGAGTAGCATC-----TGTAGTAG--T--TGCGAT---TAGTGCACTTTCACTAGACTTAAGA-CTGCACGGGTTT-TG----GGGAA------A------TGGAAGATA-T-----------------AT--CTGTCTAGACAAA--ACTTA-----------------CTGATTTGAAA-T-------------TGCTATTTCT-TAC---AGCGGAA------TCGAACGATGCAGAC---AACGCTATTGGACAGAACCCTTGTGATACCSizeHit CountTotal NormTotal
No Reads
droEle1
CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCA--------------CT---TTTGCAACACA-GAGCACTC----------T-----------CACTCTGCA---------------CCTCAAA----------------------------------------------TCCAC-------C----CA---ACCACGA---ATGCACCT---TGCA----------------CCC------A------------AAACGCTTGT--TTTCGTAGAAAC---TTTGATTTAGCATA-----TGTAGT----T--TGCGAT---TAGAGCACTTTCACTAGATTTAAGA-CTGCACGGGTATCTT----GGG-C------T-------GGAAGATC-A-----------------CG--CTGTCATAGTTAA--CGCAA-----------------CTTAATGGTAA-T-------------ATCCTCCTCT-TTC---AGCCGAA------ACGAACGATTTAGAC---AATGGAATTGGACGTAGTCCGTGCGATACCSizeHit CountTotal NormTotal
No Reads
droRho1
CAACCAGAACAACTTCCGAACCTACGAGGCATGCACGAACCAATGCCGACGTAAGCCA--------------CT---TTTGTTCCACA-GAGCACTC----------AGCACT---CAGCACC--------------TCTGCACCTCAAA-------------------------------TCCACA------------------AATCCACCCA---ACCACGA---ATGCACCT---T-----------GCT-CACACCC------A------------AACCGCTTGT--TTTCGTAGAAAAT--TTTGAAGTAGCATT-----TGTAGT----T--AGCGAT---TAAAGCACTTTCACTAGACCTAAGA-TTGCACGGGTATCTT----GGG-A------T-------GGAATAGC-T-----------------CT--CTCGCGAAACTAA--CATAA-----------------CTGAATGGTAA-T-------------CTGCTCCTCT-TCC---AGCCGAA------ACCAATGATTTGGAC---AATGGAATTGGAAGCAACCCGTGCGATTCASizeHit CountTotal NormTotal
No Reads
droFic1
CAACCAGAACAACTTCCGATCCTTCGAGGCATGCACGAACCAATGCCGACGTAAGCCCC----CACCAGACACTTCTTCTGCACCACA-GAACACTC----------CGCACC---------TCTGCA---------------CCTTACAAACC-----------------------------------------AC----------------CA---ACCACGA---ATGCACCC---TGCACT----CCGCT-CAC-CCC------A------------AACTGCTTGA--TTTCGTAGATAC---TTTGAAGTAGCATT-----TGTAGT-------TGCGAT---TAGTGCACTTTCATTAGACTTAAGT-TAGCACGGGTTACTC----GGG--------T-------GGAAGATC-A-----------------TC--CTGTTTAAGCATT--ACTTA---------------ACCCCATTCGAA--------------------TCATCT-TTT---AGCCGAA------ACCAACGACCTGGAC---AACGGAATTGGACAAAGTCCGTGCGATACTSizeHit CountTotal NormTotal
No Reads
droKik1
CAACCAGAACAACTTCCGGTCGTTCGAGGCATGCACGAATCAGTGCGGAAGTAAGCCTGCC--CTCCAACCTC------TGCACCT----------ATG--CACCTCTGAACCACAGAGCACTCTGCA---------------CC-----------------------------------------------------C---------A----CA---CCCCCGA---ATGCACCT---TGCACTTAGACCGCT-CACCCGA------AA-----------ACCTGCTTGA--CTTTGTAGA-AC---TTTGAAATAGCATC-----CGTAGA-T--T--T--GAG---TAGAGCACTTTCACTAGGCTTAAGACTTGCACGGGTTA-C-----GGGAA------T-------GGGGACAC-T-----------------TG--ATTTCGATGCTGT--CTTTA-----------------CTGAACTGCTC-TA-----T--TT--CACGCTCTCC-TTTCGCAG---GACCCGTCGACAATAACAACGCCAATAACAACGTGGAACAGGGTCTGTGCGACAGCSizeHit CountTotal NormTotal
No Reads
droAna3
CAACCAGAACAACTTCCGGTCATTCGAGGCATGCACAAATCTCTGCGGAAGTAAGCCTGCC--TTCCGGCCACC---T---CTCTCTG-AAACTCTC----------TGCACCACAGAGCACTCAGCA---------------CC----------------------------------CACCCACA------------------ACTCCAC----------CCA---GCGCACCC---AGCACC----CCACT-CACCCTT------A------------ATTTGCTTGA--ATTAGTAGTTAT---CTTGAAATAGCATC-----AGTAGT----T--TGAA-T---TTTGGCACTTTCAAGAGTCTTAAGA-TTGCACGGGTAT-AA----CGGTT------G-------GGAATGTT-T-----------------TG--CCTTTG-TGTTCC--CCATA-----------------TTTATTTGCCA-TA------------ATTCTTCCCA-ACCCACAG---ACCCTGTTGAAAACGATACTAAC---AACGAGATTGGCCAGGGTCAGTGCGACAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........ACTTCCGGTCATTCGAGGCATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AACGAGATTGGCCAGGGT............2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAACGATACTAAC---AAC...........................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AACGAGATTGGCCAG...............1811.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC---AACGAGATTGGCCAGGGC............2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAC---AACGAGATTGGCCAGG..............2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGGTCAGTGCGACAGC2111.001000001
.............................................................................................................................GCA---------------CC----------------------------------CACCCACA------------------ACTCCAC----------CC.........................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAGGGTCAGTGCGACAGC2411.001010000
droBip1
CAACCAGAACAACTTCCGGTCGTTCGAGGCATGCACGAGTCTCTGCGGAAGTAAGCCTGCC--TTCCGGCCACC---TTT---CTCTG-ACTCTCTC----------TGCACCACAGAGCACTCAGCA---------------CC--------C--------------------------ACCCACC------------------ACTCCAC----------CCA---GCGCACCC---AGCACC----CCGCA-CACCCTT------A------------CTTTGCTTGA--CTTAGTAGTTGC---CTTGAAAAAGCATC-----AGTAGT----T--TGAA-C---TTTAGCACTTTCAATAGGCTTAAGA-TTGCACGGGTAT-AA----GGGTT------G-------GGAATGTT-C-----------------TG--C-CTCGGA-------CCACA-----------------TTTAATTCAAA-TA------------TTTCTTCTTT-AGATACAA---ACCCTGTTGAGAACGAGACCAAC---AACGAGATCGGCCAAGGTCAATGCGACAGCSizeHit CountTotal NormTotal
No Reads
dp5
CAATCAGAACAACTTCCGTTCGTTTGAGGCATGCACGAATCTCTGCGGAAGTAAGCCTGCA--CACCAGCTAA-----ATGCACTCCA------CTC----------TGCACCCCAGAACAC----------------------CACC-------------------------------ACCCTCCA------------------AATGCAT-------C---CAATTTCGCACCT---TGCACT----CTGCC-CACCTTC------A------------ACCTGCTTGATTTTTAGTAGAACTA--TTAGAAGTAGCATC-----AGTAGTCT--T-----GATTAGTAGTGCACTTTCACTAGCTCTAAGA-TTGCACGGGTCT-TT----GGGAT------A------T-------C--TTCAGAATGTTGGTCTG-----------------CACAAGG-----------------CTGATCCTCTA-C---------GT--TCC-GTTC----CCCACAG---GGCCCGTTGACAACGAGATTGAC---AACGAAATTGGACAGGGTCGCTGCGAGAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............CCGTTCGTTTGAGGCATGCACGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCGTTGACAACGAGATTGAC---..............................2320.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACAGGGTCGCTGCGAGAG.2320.5010010000000
...................................................................................................................................................................................................................................TTCGCACCT---TGCACT----CTGCC-CA........................................................................................................................................................................................................................................................................................................................................2220.5010100000000
..ATCAGAACAACTTCCGTTCGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATTGGACAGGGTCGCT........2020.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAGGGTCGCTGCGAGAG.2220.5010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGATTGAC---AACG..........................1920.5010100000000
droPer2
CAATCAGAACAACTTCCGTTCGTTTGAGGCATGCACGAATCTCTGCGGAAGTAAGCCTGCA--CACCAGCTAA-----ATGCACTCCA------CTC----------TGCACCCCAGAACAC----------------------CACC-------------------------------ACCCTCCA------------------AATGCAT-------C---CAATTTCGCACCT---TGCACT----CTGCC-CACCTTC------A------------ATCTGCTTGATTTTTAGTAGAACTA--TTAGAAGTAGCATT-----AGTAGTCT--T-----GATTAGTAGTGCACTTTCACTAGCTCTAAGA-TTGCACGGGTCTTTT----GGGAT------A------T-------C--TTCAGAATGTTGGTCTA-----------------CACAAGG-----------------CTGATCCTTTA-C---------GT--TCC-GTTC----CCCACAG---GGCCCGTTGACAACGAGATTGAC---AACGAAATTGGACAGGGTCGCTGCGAGAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATTGAC---AACGAAA.......................1811.001000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGATTGAC---AACGAAATTGGAC.................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGATTGAC---AACGAAATTGGAC.................2611.001100000
droWil2
CAATCAGAACAATTTCCGCTCCTTTGAAGCATGCACGAATCAATGCGGAAGTAAGCCTCTC--CAAGAGCTT------------------------C----------TACACCAACTTGCACCTTGTACCTTGCA--------CT-----------------------------------------------------------------------------------TTGCACCC---TG-----------CA-CCCATCTTTTGCCCACCTTAA-TTTAGAATGCTTGA--TTCAGTAGAAAAATAGTTGAAGTA--------------GTT------TTAG-TTTCTTCTGCACTTTCATTACCCTTAAGT-TTGCACGGGTTC-TTCTTCGGG--------CGGGATAT-------A--CTAAAAGTA------------------------------AATTGAAGCATTTATCATAATAAATCTAATTA-CAAAATTAATATCG----TC----TTCACAG---AGCCTGTCGACAATGAGATTGAT---AATGAAATTGGCCAAAGTCGCTGCGAGAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----TTCACAG---AGCCTGTCGACA............................................2112.00220000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT---AATGAAATTGGCCAAAGTCGCT........2611.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTCGACAATGAGATTGA..................................2111.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTGAT---AATGAAATTGGCC.................2511.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGAGATTGAT---AATG..........................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT---AATGAAATTGGCCAAAGTCGC.........2511.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGTCGACAATGAGATTG...................................2111.00100010
...............................TGCACGAATCAATGCGGAAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25100010
droVir3
CAACCAGAACAACTTCCGTTCCTTTGAAGCATGCACAAATCAATGCGGAAGTAAGCCTGC------------------------CACA-GAGCTG-ACA--CTT---AATACCAA---------------CTGCACCCGA---------------------------GCACCCTGCACTC-------AAATCAATACCCACCCCAAATACAC-------C---AAATTCTGCACCC---TG-----------CCTCACT-ATCTTCACAA-----ACTTCAAAATGCTTGA--TTG-GT-TAAGC---GTAGAAGTAGCATT-CCTTAGTAGAAG--TACTTAG-T---TAGAGCACGTTCACTAGACATAAGC-TTGCACGCAAC--TT----GGTAGTTTAGCT-------GAATTAC--------------------CG--CTGCGAATA-----CCAAAA-----------------CTGATC---------------------ACTTTTACT-TTTCACAG---AGCCAGTCGAGAATGAGATCGGC---AACGAAATCTCTCCCAGCCGGTGCGAAACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGATCGGC---AACGAAAT......................2112.002000000000100000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGATCGGC---AACGAA........................1911.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGC---AACGAAATCTCTCCC...............2211.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTCGAGAATGAGATCG...................................2011.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGATCGGC---AACGAAATCTCTCCC...............2811.001000100000000000000000000000000000000000000000000000000000000000
...CCAGAACAACTTCCGTTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGTCGAGAATGAGATCGGC---A.............................2411.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATGAGATCGGC---AAC...........................1811.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCGGC---AACGAAATCTC...................2211.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCGGC---AACGAAATCTC...................2111.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CAACCAGAACAACTTCCGTTCCTTTGAAGCATGCACAAATCAATGCGGAAGTAAGCTTG----------------------CTCCACA-AATCACAC-----TT---TATACCAA---------------CTGCACTCGA---------------------------GCACTCTGCACTC-------AATTTATTACCCACC------C----CA---CACACAA--------TTT---TGCACT----CTGCTTCACCTTC------AA-----ATTTGGGAATGCTTAT--TT-AGTT-AAGC---GTAGAAGTAGTTTTTCCCAAGTAGAATATTT-ATTGAG---TAGTGCACTTTCACTAGATATAAGA-TTGCACGAATAT-TT----TGTAGATTAGCT-------GGGTAGT--------------------CTCTGTATCG-------AACAAAT-----------------CTGAGT------T-------------TCCTATTT----TTCACAG---AGCCCATCGACAACGAGATCGTC---AACGAAATCTCACCCAGCCGTTGCGAAACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAT-----------------CTGAGT------T-------------TCCTATTT----TTCACAG---........................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGATCGTC---AACGAAATCT....................2311.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------------------CTCTGTATCG-------AACAAAT-----------------C.......................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGATCGTC---AACGAA........................1811.001000100
....................................................................................................................................................................................................................................................................................................................GTAGAAGTAGTTTTTCCCAAGTAGA............................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCCAGCCGTTGCGAAAC.2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGT--------------------CTCTGTATCG-------AACAAAT-----------------C.......................................................................................................2411.001000010
droGri2
CAACCAAAACAATTTCCGTTCCTTTGAAGCATGCACAAATCAATGCGGAAGTAAGCCTGC------------------------CACA-AAGCTTTA-AAACC----TGCACC------------------------CGTGCACCACACA-------------------------------CACACAAATTCAATACCC---------------A---CAC---AATTCTGCACCT---AA----------TCC-TACTTTG------A------------AACTGCTTGT--TCGA--TTAAGC---GTAGACATATCACT-CTTCAGTAGTAT--T---TAG-T---TAGTGCACCCTCACTAGACTTAAGA-TTGCACGCAAAT-TT----GT-AGTCTAGCT-------GGGCTGT--------------------AG--CTTTCGAG-----AACAAAT-----------------CTGAGT------A-------------TACAACTT----TTCACAG---CCCCTGTCAACAATGAGGGATCC---AATGAGGTATCTCCCAACCGCTGCGAGGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:31 AM