ID:

dsi_28946

 Coordinate:

3r:21756414-21756563 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.5 -16.5

Flybase annnotation

three_prime_UTR [3r_21756242_21756840_+]; exon [3r_21756242_21756840_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GCAGTGTACGGCCAGTTAGTTAGTATTTATGCAATAGCAGGCATAGTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCAAGCATCAACATATACACACATTCGCATATGTTACAATTGTTTTAATTATTCGACCGAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAAATGAAATAGAAGTGTATACATCATGTTTGTAGTGGTTACCAACAATTCGATTGTCTAAAGTTGTAAT
***************************************************************...........(((((((((.(((((((((((..(((((((............))))))).....))).((((((.((((.((....))....))))))))))))))))))...))))))))).............*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M023
head
 M024
male body		 O001
Testis
...............................................................TACCGAAACTGCATTTTGAGCCGAAGCA............................................................................................................................................................... 28 0 1 8.00 8 0 0 4 3 1 0 0 0 0 0 0 0
...........................................TAGTCATGTAAGTGAAAAGCTACCGA..................................................................................................................................................................................... 26 0 1 7.00 7 5 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAATTTGAAATGAAATAGAAGTGTA................................................... 25 0 1 7.00 7 4 1 0 0 0 2 0 0 0 0 0 0
...............................................................TACCGAAACTGCATTTTGAGCCGAAGC................................................................................................................................................................ 27 0 1 5.00 5 3 0 0 0 1 0 0 1 0 0 0 0
................TAGTTAGTATTTATGCAATAGCAGGCA............................................................................................................................................................................................................... 27 0 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0 0
...............................................................TACCGAAACTGCATTTTGAGCCGAAG................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGTTTTGTCATTTGAAATGAAATAGA......................................................... 26 1 1 3.00 3 0 0 0 0 2 0 0 1 0 0 0 0
...................................................TAAGTGAAAAGCTACCGAAACTGCA.............................................................................................................................................................................. 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
....TGTACGGCCAGTTAGTTAGTATTTA............................................................................................................................................................................................................................. 25 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTATACATCATGTTTGTAGTGGT............................... 24 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 1
..........................................................................................................................TACAATTGTTTTAATTATTCGACCGA...................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................AAGCTACCGAAACTGCATTTTGAGCCGA................................................................................................................................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCGACCGAAAGGCCAGCGAGAATTGA.................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TTGAGCCGAAGCAAGCATCAACATA................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGAAAAGGAATAGAAGTGTATACAGCA............................................ 27 3 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTGATTGTTTTGTAATTTGAAATGAAA............................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTGAAAAGATACCGGA.................................................................................................................................................................................... 19 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
....TGTACGGCCAGTTAGTTAGTATT............................................................................................................................................................................................................................... 23 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
......TACGGCCAGTTAGTTAGTATTTATGCA......................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGAAAAGGAATAGAAGTGTATACAGC............................................. 26 3 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGAAATAGAAGTGTATACATCATGTT........................................ 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTAATTTGAAATGAAATAGAAGTGTA................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGTAATTTGAAATGAAATAGAAGTGTA................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTGATTGTTTTGTAATTTGAAATGA............................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................GTAATTTGAAATGAAATAGAAGTGTA................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AGTTACCAACAATTCGATTGTCTAAAG....... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTGAAAAGGAATAGAAGTGTATACAGCA............................................ 29 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................TAGTTAGTATTTATGCAATAGCAGG................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..AGTGTACGGCCAGTT......................................................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....TGTACGGCCAGTTAGTTAGTATTT.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGTATACATCATGTTTGTAGTAGTT.............................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................TTTTGAGCCGAAGCAAGCATCAACA..................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTAATTATTCGACCGAAAGGCCAGCGAGA......................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACCAACAATTCGATTGTCTAAAG....... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACCAACAATTCGATTGTCTAAAGT...... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAATTCGATTGTCTAAAGTTGTAAT 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................AAGGCCAGCGAGAATTGATTGTTTTGT........................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATTTGAAAAGGAATAGAAGTGTATAC................................................ 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....TGTACGGCGAGTTAGTTAGTATT............................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATTTGAAATGAAATAGAAGTGTA................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCAACAATTCGATTGTCTAAAGT...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAGAAGTGTATACATCATGTTTGTAGT.................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................GAAACTGCATTTTGAGCCGAAGC................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................GTGAAAAGCTACCGAAACTGCATT............................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................TGTAAGTGAAAAGCTACCGAAACTGCA.............................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTTAATTATTCGACCGAAAGGCCAGCGA........................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................TGAAAAGCTACCGAAACTGCATTTTGAGC...................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................TAGTTAGTATTTATGCAATAGCAGGC................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCGACCGAAAAGCCAGCGAGAATTGA.................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTAGTAGTTACCAACAATTCGATTGTCTA.......... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TACGGCCAGTTAGTTAGTATTTATGCAAT....................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TACAGCATGTTTGTAGTAGTTACCAA......................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGATTGTTTTGTAATTTGAAATGAAA............................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTGATTGTTTTGTCATTTGAAATGAAA............................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGGAATAGAAGTGTATACAGCATG.......................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................TCATGTAAGTGAAAAGCTACCGAAAC.................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTTGTAGTAGTTACCAACAATTCGAT................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAGGCCAGCGAGAATTGATTGTTT.............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TACATCATGTTTGTAGTAGTTACCAACAA...................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATTATTCGACCGAAAGGC................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................TCTTAATTATTCGACCGAAAGGCCAGCGA........................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTTTGAGCCGAAGCAAGCATCAAC...................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................CGAAACTGCATTTTGAGCCGAAGCAAGC............................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCGAAACTGCATTTTGAGCCGAAGCA............................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGTTTTGTAATTTGAAATGAAATAGAAG....................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGAAAAGCTACCGAAACT................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTGATTGTTTTGTCATTTGAAATGAAA............................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................CATAGTCATGTAAGTGGA............................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTGATTGTTTTGTAATTTGAAATGAAATA........................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................GCAATAGCAGGCATAGTCATGTAAG................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGTAATTTGAAAAGGAATAGAAGTGTA................................................... 29 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TAGTTACCAACAATTCGATTGTCTAA......... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................AGGCATAGTCATGTAAGTGAAAAGC........................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AAATAGAAGTGTATACATCA............................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTAATTTGAAAAGGAATAGAAGTGTA................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TACAATTGTTTTAATTATTCGATTGAAAG................................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGGAATAGAAGTGTATACAGCATG.......................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................TAGCAGGCATAGTCATGTAAGTGA................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............TTAGTTAGTATTTATGCAATAGCAGG................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCAACAATTCGATTGTCTAAAGTTGTA.. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................GTAGTTACCAACAATTCGATTGTCTA.......... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCATTTGAAATGAAATAGAAGTGTA................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................TCATGTAAGTGAAAAGCTACCGAAACAA................................................................................................................................................................................ 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................GAAACTGCATTTTGAGCCGAAGCAAGC............................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTTGAGCCGAAGCAAGCATCAACATA................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATACACACATTCGCATATGTTACAATT......................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................AAAGCTACCGAAACTGCATTTTGAGCC..................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................AAGCTACCGAAACTGCATTTTGAGC...................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................TACCGAAACTGCATTTTGAGCCGAA.................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TGAAAAGCTACCGAAACTGCATTTTG......................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GTAGTGGTTACCAACAATTCGATTGT............. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................AACGATTCGATTGTCTAAAGT...... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TATGTTACAATTGTTTTAATTATTCGACCGA...................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGACCGAAAGGCCAGCGAGAATTGAT................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................CATAGTCATGTAAGTGAAAAGCT.......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGACCGAAAGGCCAGCGAGA......................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................TGCATCTTGAGCCGA................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................ATTGTTTTGTGATCTGAA................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
..................GTTAGTACTTATGCGA........................................................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGTCACATGCCGGTCAATCAATCATAAATACGTTATCGTCCGTATCAGTACATTCACTTTTCGATGGCTTTGACGTAAAACTCGGCTTCGTTCGTAGTTGTATATGTGTGTAAGCGTATACAATGTTAACAAAATTAATAAGCTGGCTTTCCGGTCGCTCTTAACTAACAAAACATTAAACTTTACTTTATCTTCACATATGTAGTACAAACATCACCAATGGTTGTTAAGCTAACAGATTTCAACATTA
***************************************************...........(((((((((.(((((((((((..(((((((............))))))).....))).((((((.((((.((....))....))))))))))))))))))...))))))))).............*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................GTAAGCGTATACAATGTTAACAAAAT................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................TCGTAGTTGTACATGTGT............................................................................................................................................. 18 1 4 0.25 1 0 1 0 0 0 0 0
................................................................TGCCTGTGACCTAAAACTC....................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 2 0 0 0
...CACAGGCCTGTCGATCAAT.................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 1 0 0
..................................................................................................................................AAAATTAGTACGCTGGC....................................................................................................... 17 2 20 0.10 2 0 0 1 0 0 0 1
....................................................................................................................................AATTTATAAGCTGGC....................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0
..................................................................................CGGCTTCGAACGTAGTT....................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21756364-21756613 + dsi_28946 GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------AATTA-----TTCGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAA-----------ATGAAA-TAG-AAGTGTATACATCA-TGTTTG----TAGTGGTTACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGTAAT
droSec2 scaffold_13:1071140-1071389 + GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------AATTA-----TTCGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAA-----------AAGGAA-TAT-AAGTGTATACAGCA-TGTTTG----TAGTAGCTACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGTAAT
dm3 chr3R:22279825-22280077 + GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCAAGAAGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------ATTAA-----TCGGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAA-----------AATGAA-TAG-AATTGTATACATCA-TGTTTG----TAGTAGTTGCCAACAAT-----------TCGATTGTC-TA----AT--------GT---------------------------------------TGTAAT
droEre2 scaffold_4820:5765621-5765870 - GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------AATTA-----TTGGACC--GAAGGGCCAGCGAGAATTGATTGTTTTGTAATTGAAA-----------AATAAA-TAG-AATTGTATACATCA-TGTTTG----TAGTAGTTACCAACAAC-----------TCGCTTGTC-TA----AA--------GT---------------------------------------TGTCAT
droYak3 3R:24208551-24208806 - GCAGT-G-T---------------------------------------------------GCG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTTTTATTTAATTA-----TTGGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTGAAA-----------AATATA-TAG-AATTGTATACATCA-TGTTTG----TAGTAGTTACCAACAAT-----------TCGATTGTG-GA----AA--------AT---------------------------------------TGTAAT
droEug1 scf7180000409682:305409-305664 - GCAAA-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------GTGATGTAAGTGAAAAGCTACCGAAAATGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACAGACA---TTCGCATATGTTACCATTGT-TCT------AATTG-----TCAGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTAAACAA-AAAACATA------AAGAAATTGTATACATAT-TGTTTG----TACTAGTTACTAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TATAAT
droBia1 scf7180000302113:2516166-2516418 + GCAGT-G-T---------------------------------------------------GCG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACCATTGT-TCT------ACCTA-----TCAGCCC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTGA-G-AA-GGAGCAG-------AAGAAATTGTATACATCT-TGTTTG----TAGTGGTTACTAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TTTAAT
droTak1 scf7180000415712:173114-173371 + GCAGT-G-T---------------------------------------------------GCG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------G-CATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACCATTGT-TCT------ACTTA-----TCAGACC--GAAGGGCCAGCGAGAATTGATTGTTTTGTAATCTAAAAAAAGGAA---AAGAAA-TAGAAATTGTATACATAT-TGTTTG----TAGTGGTTACTAACGAT-----------TCGATTGTC-TA----GA--------GT---------------------------------------TTTAGG
droEle1 scf7180000491280:306661-306916 + GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCGGGCATA-----------------------------------------------GTCATTTAAGTGAAAAGCTACCGAAAATGCATTTTGTGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTATCATTGT-TCT------ACTTA-----TCAGACC--GGGAGGCGAGCAAGAATTGATTTTTTTGTAATTTGAAAAA-AAAACAAAAGA------AATTTGTATACATCT-TGTTTG----CAGTAGTTACTAACCAT-----------TCGATTGTC-TT----AA--------GT---------------------------------------TTTAAT
droRho1 scf7180000779718:33676-33925 - GCAGT-G-T---------------------------------------------------ATG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------GTCTTTTAAGTGAAAAGCTACCGAAACTGCATTTTAAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTATCATTGT-TCT------ACTTA-----TCAGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATATGAA-----------AAAAAA-GA-AAATTGTATACATCT-TGTTTG----TAGTAGTTACTAACAAT-----------TCGATTGTC-AA----AA--------GT---------------------------------------TTTAAT
droFic1 scf7180000454055:2175771-2176022 + GCAGA-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCGTTAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATATACACA---TTCGCATATGTTATCATTGT-TCT------ACCTA-----TCAGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTAAAGAA-----------AGAATGAATATTGTATACATCT-TGTTTG----TAGTAGTTACTAACAAT-----------TCGATTGTC-TA----AG--------GT---------------------------------------TTTACT
droKik1 scf7180000302475:562959-563207 + GCAGG-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCATTATCAGGCAGC---------------------GCCGGCGCATTGGCGCTTAGTATGTAGTTATGTAAGTGAA-AGCTACCGAAACTGCATTTTGAGCCGAGGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACCATTGT-T---------------------------------CCAGCGAGAATTAATTGATTTATAATCGA-----------------------AAATTGTATACATCT-TGATTGTACGTAGTCGTTACTAACAAT-----------TCGCTTGTC-AA----AC--------GT---------------------------------------TTTCAT
droAna3 scaffold_13340:22377309-22377547 - GCAGG-G-T--------------------------------------------------AATG----------GCCAGCGTTAGT--TAGTATTTATGC----------TTA-----------------------------------------------GTCTTGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---TGCATCAACAT-----------------------------------------------ATACCCACA---TTCGCATATGTTACCATTGT-TCT------ACTTA-----TCAGCCCCAAAAAGGCCAGCGAGAATTGATTGTTTTATAATTGA-------------------TTAAATATTGTATACACCT-TGATTG----TAATAATTACTAATAAT-----------TCGCTTGTA-AA----AC--------GT---------------------------------------TTCATT
droBip1 scf7180000396721:780866-781104 + GCAGG-G-T--------------------------------------------------AATG----------GCCAGCGTTAGT--TAGTATTTATGC----------TTA-----------------------------------------------GTCTTGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---TGCATCAACAT-----------------------------------------------ATACCCACA---TTCGCATATGTTACCATTGT-TCT------ACTTA-----TCAGCCCCGAAAAGGCCAGCGAGAATTGATTGTTTTATAATTGA-------------------TTAAATATTGTATACACCT-TGATTG----TAGTAATTACTAATAAT-----------TCGCATGTA-AA----AC--------GT---------------------------------------TTCATT
dp5 2:14135334-14135522 + GCAGG-G-T--------------------------------------------------TACA----------GCCA--GTTAGA--TAGTATTTACGCGTTAGCAGGCAT----------------------------------------------TAGTCATGTAAGTGAAAATCTACTGA-ATTGCATTTTGAGCCCAAGG----GATAGTTGCA---------------------------------------------------------------GCATATGTTACCATTGT-CTA------A----------C-------------------AG-ATTGTTTGTTTTCTAATTAA-----------------------ATAT-------------AGCTG----TAGTATCTTCTAACTCT-----------TCGCTTGTCCTA----AC--------GT---------------------------------------TG----
droPer2 scaffold_0:6306178-6306366 - GCAGG-G-T--------------------------------------------------TACA----------GCCA--GTTAGA--TAGTATTTACGCGTTAGCAGGCAT----------------------------------------------TAGTCATGTAAGTGAAAAGCTACTGA-ATTGCATTTTGAGCCCAAGG----GATAGTTGCA---------------------------------------------------------------GCATATGTTACCATTGT-CTA------A----------C-------------------AG-ATTGTTTGTTTTCTAATTAA-----------------------ATAT-------------AGCTG----TAGTATCTTCTAACTCT-----------TCGCTTGTCCTA----AC--------GT---------------------------------------TG----
droWil2 scf2_1100000004902:3186561-3186832 + ACACA-CACACATTAACATAATTACAAGTTATTACAATTACAATTAGCAAAGGCAGGGTTA-----------------------------------------------CATACATACATACATAAATAGTTACAC-CA-------------AGT---TAGTTA-TTAAGTAAA---TAAGTGAAACTGCATTTTCAGCTTAACCG---CATACTGTCATACATTGATT--------------------------------------GTATACACA---TTTTCATATGTTATTGTTCT-CTT------TTT-----------------ATATTACAACTAGATTTGTTTACATTTTTATT-------------------------------------------TTTT----AATTGTCTATTAAAATGTTTTTTGTCT----AATTTA-TA----CA--------TT---------------------------------------TCTAAC
droVir3 scaffold_13047:10962516-10962826 + GCAGA-G-T---------------------------------------------------TTACCCTTAACGAGTTA--GTTAGTACGAGTATTTATGCGAGTGAAG-C------------------------GC-GT-------------TGC---TAGTTAAATAAGTGAAAAGCTACTGAAACTGCATT-TGGGCTAAAAAC---CATAGTTACATACAGTTACTTATACAAACTCATACACACACACACACACAACCACACAACACACACACATTTTGCATATGTTATT---GTTTTT------ACTAA-----TTTAAC----AAAGTTGTGCGATTGTTAA------TTTAATTTAAAATA-----TGTA------ACGCAATTC--ACGATTGCGATTTG----AACTTGAT-CTAAAA-CATTCTGCTTTA------GTGCAAATACAA--------GT---------------------------------------TT----
droMoj3 scaffold_6540:30816584-30816860 - GCAGA-G-T---------------------------------------------------TTAACCTTAACGTGTTA--GTTAGTATGAGTATTTATGCGTGAGCGAGCAGC---------------------GC-GT-------------TGC---TAGTTGATTAAGTGAAAAGCTACTGATACTGCATT-TGAGCTAAAAA----CATAGTTACATACATTTCCTTATACAAAC----AAACAAACAAACAATCACCCACAC-ACATACATAAATTTTGCACATGTTATTGTATT-TTT------ATTTAACTAATTTAAC--------------A-A-ATT-TTTG----TTAAT-------------------ACATTTAATATT--CTATATTG-TATTTG-------------------AT-----------TTAAGCATC-TA----AT--------CT---------------------------------------TGAACT
droGri2 scaffold_14624:791535-791809 + ACAAGAG-T---------------------------------------------------TT------------TAT--GGTAAC--AAGTATTTATGCGT----------------------------------------------------------------TAAGTGAAAAGCTACTGAAACTGCATT-TGAGCTAAAATTAAACATAGTTACATATATTTACTTATACA------------------------CACACAC-ACATATATA---TTTGCATATGTTATTTTGTT-TTT------ACTAA-----TCTAATA--ATTTGTTTATAGAG---------TATTTTAATTTTAAAAA-------------------ACTTGT----------------------------CTAAAATCATTCTGCTTTA------GTGCAAATACAAAGTGTATAATTATTGTAGCACATAAAAAACCAAACAAAACAACAATAACAGCAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------AATTA-----TTCGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAA-----------ATGAAA-TAG-AAGTGTATACATCA-TGTTTG----TAGTGGTTACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGTAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................TACCGAAACTGCATTTTGAGCCGAAGCA---................................................................................................................................................................................................................................................................................................................2818.00800000001000043000
..............................................................................................................TA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGA.........................................................................................................................................................................................................................................................................................................................................2617.00700000050002000000
...................................................................................................................................................................................................................................................................................................................................................................TAATTTGAA-----------ATGAAA-TAG-AAGTGTA.......................................................................................................................2517.00700000040201000000
.................................................................................................................................................................................TACCGAAACTGCATTTTGAGCCGAAGC....................................................................................................................................................................................................................................................................................................................2715.00500000031010000000
.................................................................................TAGT--TAGTATTTATGCAATAGCAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000031000000000
.................................................................................................................................................................................TACCGAAACTGCATTTTGAGCCGAAG.....................................................................................................................................................................................................................................................................................................................2613.00300000030000000000
.....................................................................................................................................................................TAAGTGAAAAGCTACCGAAACTGCA..................................................................................................................................................................................................................................................................................................................................2513.00300000010002000000
....T-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTA................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000001002000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTATACATCA-TGTTTG----TAGTGGT..............................................................................................2412.00200011000000000000
.................................................................................................................................................................................................................................................................................................TACAATTGT-TTT------AATTA-----TTCGACC--GA.......................................................................................................................................................................................2612.00200000020000000000
.............................................................................................................................................................................AAGCTACCGAAACTGCATTTTGAGCCGA.......................................................................................................................................................................................................................................................................................................................2812.00200000000000020000
...............................................................................................................................................................................................................................................................................................................................TCGACC--GAAAGGCCAGCGAGAATTGA.....................................................................................................................................................................2612.00200000010001000000
................................................................................................................................................................................................TTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------A.....................................................................................................................................................................................................................................................2512.00200000020000000000
......................................................................................................................................................................................................................................................................................................................................................ATTGATTGTTTTGTAATTTGAA-----------ATGAAA-..................................................................................................................................2812.00200000020000000000
....T-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATT..................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000011000000000
........T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGAAA-TAG-AAGTGTATACATCA-TGTT...........................................................................................................2612.00200000010001000000
.................................................................................................................................................................................................................................................................................................................................................................TGTAATTTGAA-----------ATGAAA-TAG-AAGTGTA.......................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................TTTGTAATTTGAA-----------ATGAAA-TAG-AAGTGTA.......................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................TTGATTGTTTTGTAATTTGAA-----------ATGA.....................................................................................................................................2511.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................GTAATTTGAA-----------ATGAAA-TAG-AAGTGTA.......................................................................................................................2611.00100000010000000000
.................................................................................TAGT--TAGTATTTATGCAATAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..AGT-G-T---------------------------------------------------ACG----------GCCA--GTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
....T-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..............................................................................................................................................................................................TTTTGAGCCGAAGCA---AGCATCAACA......................................................................................................................................................................................................................................................................................................2511.00100000000001000000
............................................................................................................................................................................................................................................................................................................TT------AATTA-----TTCGACC--GAAAGGCCAGCGAGA..........................................................................................................................................................................2911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAAT-----------TCGATTGTC-TA----AA--------G..............................................2411.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------......2511.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGTAAT2511.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................AAGGCCAGCGAGAATTGATTGTTTTGT............................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATTTGAA-----------ATGAAA-TAG-AAGTGTA.......................................................................................................................2311.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------......2411.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TAG-AAGTGTATACATCA-TGTTTG----TAGT.................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................GAAACTGCATTTTGAGCCGAAGC....................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
........................................................................................................................................................................GTGAAAAGCTACCGAAACTGCATT................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...................................................................................................................................................................TGTAAGTGAAAAGCTACCGAAACTGCA..................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
...........................................................................................................................................................................................................................................................................................................TTT------AATTA-----TTCGACC--GAAAGGCCAGCGA............................................................................................................................................................................2811.00100000000010000000
.........................................................................................................................................................................TGAAAAGCTACCGAAACTGCATTTTGAGC..........................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.................................................................................TAGT--TAGTATTTATGCAATAGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
........T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................TGATTGTTTTGTAATTTGAA-----------ATGAAA-..................................................................................................................................2611.00100000000001000000
................................................................................................................................................................TCATGTAAGTGAAAAGCTACCGAAAC......................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................AAGGCCAGCGAGAATTGATTGTTT...............................................................................................................................................................2411.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................ATTA-----TTCGACC--GAAAGGC..................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................................................................................................TTTTGAGCCGAAGCA---AGCATCAAC.......................................................................................................................................................................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................CGAAACTGCATTTTGAGCCGAAGCA---AGC.............................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...................................................................................................................................................................................CCGAAACTGCATTTTGAGCCGAAGCA---................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................TGTTTTGTAATTTGAA-----------ATGAAA-TAG-AAG...........................................................................................................................2811.00100000010000000000
.........................................................................................................................................................................TGAAAAGCTACCGAAACT.....................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................ATTGATTGTTTTGTAATTTGAA-----------ATGAAA-TA................................................................................................................................3011.00100000010000000000
.................................................................................................GCAATAGCAGGCATA-----------------------------------------------GTCATGTAAG.......................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................AGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGC...............................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................AAA-TAG-AAGTGTATACATCA-...............................................................................................................2011.00100000000001000000
.....................................................................................................TAGCAGGCATA-----------------------------------------------GTCATGTAAGTGA....................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
................................................................................TTAGT--TAGTATTTATGCAATAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGTA..2811.00100010000000000000
................................................................................................................................................................TCATGTAAGTGAAAAGCTACCGAAACAA....................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.....................................................................................................................................................................................GAAACTGCATTTTGAGCCGAAGCA---AGC.............................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................TTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------A.....................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................T-----------------------------------------------ATACACACA---TTCGCATATGTTACAATT........................................................................................................................................................................................................................2811.00100000000000001000
............................................................................................................................................................................AAAGCTACCGAAACTGCATTTTGAGCC.........................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.............................................................................................................................................................................AAGCTACCGAAACTGCATTTTGAGC..........................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.................................................................................................................................................................................TACCGAAACTGCATTTTGAGCCGAA......................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................................................TGAAAAGCTACCGAAACTGCATTTTG.............................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................G----TAGTGGTTACCAACAAT-----------TCGATTGT.................................................................2611.00100010000000000000
............................................................................................................................................................................................................................................................................................TATGTTACAATTGT-TTT------AATTA-----TTCGACC--GA.......................................................................................................................................................................................3111.00100000010000000000
................................................................................................................................................................................................................................................................................................................................CGACC--GAAAGGCCAGCGAGAATTGAT....................................................................................................................................................................2611.00100000000001000000
............................................................................................................CATA-----------------------------------------------GTCATGTAAGTGAAAAGCT..............................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
................................................................................................................................................................................................................................................................................................................................CGACC--GAAAGGCCAGCGAGA..........................................................................................................................................................................2011.00100000000001000000
droSec2
GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------AATTA-----TTCGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAA-----------AAGGAA-TAT-AAGTGTATACAGCA-TGTTTG----TAGTAGCTACCAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGTAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................AATTTGAA-----------AAGGAA-TAT-AAGTGT........................................................................................................................2313.0030030
........................................................................................................................................................................................................................................................................................................................................................................................................ATACAGCA-TGTTTG----TAGTAG...............................................................................................2013.0031011
.........................................................................................................................................................................................................................................................................................................................................................GATTGTTTTGTAATTTGAA-----------AAGGA....................................................................................................................................2411.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................ATACAGCA-TGTTTG----TAGTAGCTACC..........................................................................................2511.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................ATACAGCA-TGTTTG----TAGT.................................................................................................1811.0010010
....................................................................................................ATAGCAGGCATA-----------------------------------------------GTCATGTAAGT......................................................................................................................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................................................................................................................................................................................................AATTTGAA-----------AAGGAA-TAT-AA............................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................ATTTGAA-----------AAGGAA-TAT-AAGTGT........................................................................................................................2211.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------T.....2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................TTG----TAGTAGCTACCAACAAT-----------TC.......................................................................2211.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................G----TAGTAGCTACCAACAAT-----------TCGATT...................................................................2411.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TGT...2011.0010010
dm3
GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCAAGAAGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------ATTAA-----TCGGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTGAA-----------AATGAA-TAG-AATTGTATACATCA-TGTTTG----TAGTAGTTGCCAACAAT-----------TCGATTGTC-TA----AT--------GT---------------------------------------TGTAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................TTTTGAGCCGAAGCAAGAAGCATC..........................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000100000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-----------TCGATTGTC-TA----AT--------GT---------------------------------------......1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
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.....................................................................................................TAGCAGGCATA-----------------------------------------------GTCATGTAAGTGA....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
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............................................................................................................CATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGA.........................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
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...................................................................................................................................................................................CCGAAACTGCATTTTGAGCCG........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TCGATTGTC-TA----AT--------GT---------------------------------------TGT...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..AGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAGTTGCCAACAAT-----------TCGATTGTC-...............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................GCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGC...............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAG.......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.CAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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................................................................................................................................................................................................TTGAGCCGAAGCAAGAAGCATCAACAT-----------------------------------------------A.....................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................GAGAATTGATTGTTTTGTAATTTGAA-----------AA.......................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................TTATGCAATAGCAGGCATA-----------------------------------------------GTC..............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................AATTGT-TTT------ATTAA-----TCGGACC--GAAAGGC..................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................TA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAA........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................................................................................................................................................TCA-TGTTTG----TAGTAGTTGCCAACAAT-----------T........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
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........................................................................................................CAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGC...............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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..........................................................................................TATTTATGCAATAGCAGGCATA-----------------------------------------------GT...............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................TACACACA---TTCGCATATGTTACAATTGT-T....................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AGAAGCATCAACAT-----------------------------------------------ATACACACA---TTCGCA....................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCA-TGTTTG----TAGTAGTTGC...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACAAT-----------TCGATTGTC-TA----AT--------GT---------------------------------------TG....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................ATGTTACAATTGT-TTT------ATTAA-----TCGGA.............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATTTGAA-----------AATGAA-TAG-AAGA..........................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTT------AATTA-----TTGGACC--GAAGGGCCAGCGAGAATTGATTGTTTTGTAATTGAAA-----------AATAAA-TAG-AATTGTATACATCA-TGTTTG----TAGTAGTTACCAACAAC-----------TCGCTTGTC-TA----AA--------GT---------------------------------------TGTCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTG----TAGTAGTTACCAACAAC-----------TCGCTTG..................................................................2811.0011000000
............................................................................................................................................................................................................................................................................................................TT------AATTA-----TTGGACC--GAAGGGC..................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................TAG-AATTGTATACATCA-TGTTTG----TAGT.................................................................................................2711.0011000000
...........................................................................................................................................................................................GCATTTTGAGCCGAAGCA---AG..............................................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................ATTGATTGTTTTGTAATT........................................................................................................................................................1811.0011000000
......G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................................................TTAGT--TAGTATTTATGCAATAGCAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..........................................................................................................................................................................................................................................................................ATACACACA---TTCGCATATGT...............................................................................................................................................................................................................................2011.0010000010
droYak3
GCAGT-G-T---------------------------------------------------GCG----------GCCA--GTTAGT--TAGTATTTATGCAATAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACAATTGT-TTTTTATTTAATTA-----TTGGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTGAAA-----------AATATA-TAG-AATTGTATACATCA-TGTTTG----TAGTAGTTACCAACAAT-----------TCGATTGTG-GA----AA--------AT---------------------------------------TGTAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTACCAACAAT-----------TCGATTGTG-G..............................................................2611.00100000010000
....................................................................................................................................................................................CGAAACTGCATTTTGAGCCGAAGCA---AGC.............................................................................................................................................................................................................................................................................................................2811.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CATCA-TGTTTG----TAGTAGTTACC..........................................................................................2211.00100100000000
......................................................................................................................................................................................AAACTGCATTTTGAGCCGAA......................................................................................................................................................................................................................................................................................................................2011.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................A-TAG-AATTGTATACATCA-TGTTTG----T....................................................................................................2511.00101000000000
droEug1
GCAAA-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------GTGATGTAAGTGAAAAGCTACCGAAAATGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACAGACA---TTCGCATATGTTACCATTGT-TCT------AATTG-----TCAGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTAAACAA-AAAACATA------AAGAAATTGTATACATAT-TGTTTG----TACTAGTTACTAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TATAATSizeHit CountTotal NormTotal
No Reads
droBia1
GCAGT-G-T---------------------------------------------------GCG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACCATTGT-TCT------ACCTA-----TCAGCCC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTGA-G-AA-GGAGCAG-------AAGAAATTGTATACATCT-TGTTTG----TAGTGGTTACTAACAAT-----------TCGATTGTC-TA----AA--------GT---------------------------------------TTTAATSizeHit CountTotal NormTotal
No Reads
droTak1
GCAGT-G-T---------------------------------------------------GCG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------G-CATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACCATTGT-TCT------ACTTA-----TCAGACC--GAAGGGCCAGCGAGAATTGATTGTTTTGTAATCTAAAAAAAGGAA---AAGAAA-TAGAAATTGTATACATAT-TGTTTG----TAGTGGTTACTAACGAT-----------TCGATTGTC-TA----GA--------GT---------------------------------------TTTAGGSizeHit CountTotal NormTotal
No Reads
droEle1
GCAGT-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCGGGCATA-----------------------------------------------GTCATTTAAGTGAAAAGCTACCGAAAATGCATTTTGTGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTATCATTGT-TCT------ACTTA-----TCAGACC--GGGAGGCGAGCAAGAATTGATTTTTTTGTAATTTGAAAAA-AAAACAAAAGA------AATTTGTATACATCT-TGTTTG----CAGTAGTTACTAACCAT-----------TCGATTGTC-TT----AA--------GT---------------------------------------TTTAATSizeHit CountTotal NormTotal
No Reads
droRho1
GCAGT-G-T---------------------------------------------------ATG----------GCCA--GTTAGT--TAGTATTTATGCATTAGCAGGCATA-----------------------------------------------GTCTTTTAAGTGAAAAGCTACCGAAACTGCATTTTAAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTATCATTGT-TCT------ACTTA-----TCAGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATATGAA-----------AAAAAA-GA-AAATTGTATACATCT-TGTTTG----TAGTAGTTACTAACAAT-----------TCGATTGTC-AA----AA--------GT---------------------------------------TTTAATSizeHit CountTotal NormTotal
No Reads
droFic1
GCAGA-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCGTTAGCAGGCATA-----------------------------------------------GTCATGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---AGCATCAACAT-----------------------------------------------ATATACACA---TTCGCATATGTTATCATTGT-TCT------ACCTA-----TCAGACC--GAAAGGCCAGCGAGAATTGATTGTTTTGTAATTTAAAGAA-----------AGAATGAATATTGTATACATCT-TGTTTG----TAGTAGTTACTAACAAT-----------TCGATTGTC-TA----AG--------GT---------------------------------------TTTACTSizeHit CountTotal NormTotal
No Reads
droKik1
GCAGG-G-T---------------------------------------------------ACG----------GCCA--GTTAGT--TAGTATTTATGCATTATCAGGCAGC---------------------GCCGGCGCATTGGCGCTTAGTATGTAGTTATGTAAGTGAA-AGCTACCGAAACTGCATTTTGAGCCGAGGCA---AGCATCAACAT-----------------------------------------------ATACACACA---TTCGCATATGTTACCATTGT-T---------------------------------CCAGCGAGAATTAATTGATTTATAATCGA-----------------------AAATTGTATACATCT-TGATTGTACGTAGTCGTTACTAACAAT-----------TCGCTTGTC-AA----AC--------GT---------------------------------------TTTCATSizeHit CountTotal NormTotal
No Reads
droAna3
GCAGG-G-T--------------------------------------------------AATG----------GCCAGCGTTAGT--TAGTATTTATGC----------TTA-----------------------------------------------GTCTTGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---TGCATCAACAT-----------------------------------------------ATACCCACA---TTCGCATATGTTACCATTGT-TCT------ACTTA-----TCAGCCCCAAAAAGGCCAGCGAGAATTGATTGTTTTATAATTGA-------------------TTAAATATTGTATACACCT-TGATTG----TAATAATTACTAATAAT-----------TCGCTTGTA-AA----AC--------GT---------------------------------------TTCATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................C----------TTA-----------------------------------------------GTCTTGTAAGTGAAAAGCTACCG..........................................................................................................................................................................................................................................................................................................................................2711.001000010
...........................................................................................................................................................................................................CA---TGCATCAACAT-----------------------------------------------ATACCCACA---TTCGC.....................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................ATACCCACA---TTCGCATATGT...............................................................................................................................................................................................................................2011.001010000
...............................................................................................ATGC----------TTA-----------------------------------------------GTCTTGTAAGTGA....................................................................................................................................................................................................................................................................................................................................................2011.001000010
droBip1
GCAGG-G-T--------------------------------------------------AATG----------GCCAGCGTTAGT--TAGTATTTATGC----------TTA-----------------------------------------------GTCTTGTAAGTGAAAAGCTACCGAAACTGCATTTTGAGCCGAAGCA---TGCATCAACAT-----------------------------------------------ATACCCACA---TTCGCATATGTTACCATTGT-TCT------ACTTA-----TCAGCCCCGAAAAGGCCAGCGAGAATTGATTGTTTTATAATTGA-------------------TTAAATATTGTATACACCT-TGATTG----TAGTAATTACTAATAAT-----------TCGCATGTA-AA----AC--------GT---------------------------------------TTCATTSizeHit CountTotal NormTotal
No Reads
dp5
GCAGG-G-T--------------------------------------------------TACA----------GCCA--GTTAGA--TAGTATTTACGCGTTAGCAGGCAT----------------------------------------------TAGTCATGTAAGTGAAAATCTACTGA-ATTGCATTTTGAGCCCAAGG----GATAGTTGCA---------------------------------------------------------------GCATATGTTACCATTGT-CTA------A----------C-------------------AG-ATTGTTTGTTTTCTAATTAA-----------------------ATAT-------------AGCTG----TAGTATCTTCTAACTCT-----------TCGCTTGTCCTA----AC--------GT---------------------------------------TG----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTCTAACTCT-----------TCGCTTGTCC...............................................................2411.0010100000000
...............................................................................................................................................................................TCTACTGA-ATTGCATTTTGAGCCCAA......................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTCT-----------TCGCTTGTCCTA----AC--------...............................................2211.0010010000000
............................................................................................................................................................................................................................................................................................................................................................TGTTTTCTAATTAA-----------------------ATAT-------------AGCTG----TAG..................................................................................................2611.0010000000010
..........................................................................................................................................................................................TGCATTTTGAGCCCAAGG----GATAGTTGCA---------------------------------------------------------------.......................................................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................AA-----------------------ATAT-------------AGCTG----TAGTATCTT............................................................................................2011.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................AT-------------AGCTG----TAGTATCTTCTAACTCT-----------TCGCT....................................................................2911.0010100000000
.......................................................................................TAGTATTTACGCGTTAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................TCTACTGA-ATTGCATTTTGAGCCCA.......................................................................................................................................................................................................................................................................................................................2511.0010000000100
droPer2
GCAGG-G-T--------------------------------------------------TACA----------GCCA--GTTAGA--TAGTATTTACGCGTTAGCAGGCAT----------------------------------------------TAGTCATGTAAGTGAAAAGCTACTGA-ATTGCATTTTGAGCCCAAGG----GATAGTTGCA---------------------------------------------------------------GCATATGTTACCATTGT-CTA------A----------C-------------------AG-ATTGTTTGTTTTCTAATTAA-----------------------ATAT-------------AGCTG----TAGTATCTTCTAACTCT-----------TCGCTTGTCCTA----AC--------GT---------------------------------------TG----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................G----TAGTATCTTCTAACTCT-----------TCGCT....................................................................2312.002200000
..................................................................................................CGTTAGCAGGCAT----------------------------------------------TAGTC..............................................................................................................................................................................................................................................................................................................................................................1811.001100000
........................................................................................AGTATTTACGCGTTAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...............................................................................................................................................................................................................................................................................................GTTACCATTGT-CTA------A----------C-------------------AG-ATTG......................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................................ACCATTGT-CTA------A----------C-------------------AG-ATTGT.....................................................................................................................................................................2011.001100000
droWil2
ACACA-CACACATTAACATAATTACAAGTTATTACAATTACAATTAGCAAAGGCAGGGTTA-----------------------------------------------CATACATACATACATAAATAGTTACAC-CA-------------AGT---TAGTTA-TTAAGTAAA---TAAGTGAAACTGCATTTTCAGCTTAACCG---CATACTGTCATACATTGATT--------------------------------------GTATACACA---TTTTCATATGTTATTGTTCT-CTT------TTT-----------------ATATTACAACTAGATTTGTTTACATTTTTATT-------------------------------------------TTTT----AATTGTCTATTAAAATGTTTTTTGTCT----AATTTA-TA----CA--------TT---------------------------------------TCTAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................CAATTAGCAAAGGCAGGGTTA-----------------------------------------------CATAC...............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.........................................................................................................................................A-------------AGT---TAGTTA-TTAAGTAAA---TAAGT...........................................................................................................................................................................................................................................................................................................................................2411.00101000
.......................................................................................................................................................................................................TAACCG---CATACTGTCATAC...................................................................................................................................................................................................................................................................................................1911.00101000
droVir3
GCAGA-G-T---------------------------------------------------TTACCCTTAACGAGTTA--GTTAGTACGAGTATTTATGCGAGTGAAG-C------------------------GC-GT-------------TGC---TAGTTAAATAAGTGAAAAGCTACTGAAACTGCATT-TGGGCTAAAAAC---CATAGTTACATACAGTTACTTATACAAACTCATACACACACACACACACAACCACACAACACACACACATTTTGCATATGTTATT---GTTTTT------ACTAA-----TTTAAC----AAAGTTGTGCGATTGTTAA------TTTAATTTAAAATA-----TGTA------ACGCAATTC--ACGATTGCGATTTG----AACTTGAT-CTAAAA-CATTCTGCTTTA------GTGCAAATACAA--------GT---------------------------------------TT----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................AAC----AAAGTTGTGCGATTGT........................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................AGTACGAGTATTTATGCGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AAAGTTGTGCGATTGTTAA------T..............................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................AAGTTGTGCGATTGTTAA------TTT............................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AAGTGAAAAGCTACTGAAA.......................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................................ACAAACTCATACACACACACACACACA..............................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AATAAGTGAAAAGCTACTG..........................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATTC--ACGATTGCGATTTG----AACTTGAT-............................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTTTA------GTGCAAATA..........................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TACAGTTACTTATACAAACTCATACAC...........................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAT-CTAAAA-CATTCTGCT............................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAC---CATAGTTACATACAGT................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.............................................................TACCCTTAACGAGTTA--GTTAGTACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATTC--ACGATTGCGATTTG----AACTT................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TAAC----AAAGTTGTGCGATTGTTAA------TT.............................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTC--ACGATTGCGATTTG----A....................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACTGAAACTGCATT-TGGGCT.........................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................GCTACTGAAACTGCATT-TGGGCT.........................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CACACACACACAACCACACAACACACAC..............................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TGAAACTGCATT-TGGGCTAAAAAC---CAT.............................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AC----AAAGTTGTGCGATTGTT.......................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TATGTTATT---GTTTTT------ACT.........................................................................................................................................................................................................1820.501010000000000000000000000000000000000000000000000000000000000000
droMoj3
GCAGA-G-T---------------------------------------------------TTAACCTTAACGTGTTA--GTTAGTATGAGTATTTATGCGTGAGCGAGCAGC---------------------GC-GT-------------TGC---TAGTTGATTAAGTGAAAAGCTACTGATACTGCATT-TGAGCTAAAAA----CATAGTTACATACATTTCCTTATACAAAC----AAACAAACAAACAATCACCCACAC-ACATACATAAATTTTGCACATGTTATTGTATT-TTT------ATTTAACTAATTTAAC--------------A-A-ATT-TTTG----TTAAT-------------------ACATTTAATATT--CTATATTG-TATTTG-------------------AT-----------TTAAGCATC-TA----AT--------CT---------------------------------------TGAACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................TGTTA--GTTAGTATGAGTATTTATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................ATT--CTATATTG-TATTTG-------------------AT-----------TTAAGC...................................................................2511.001100000
.................................................................................................................................................................................................................ATAGTTACATACATTTCCTTATAC.......................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................ATATT--CTATATTG-TATTTG-------------------AT-----------TTAAGC...................................................................2711.001100000
droGri2
ACAAGAG-T---------------------------------------------------TT------------TAT--GGTAAC--AAGTATTTATGCGT----------------------------------------------------------------TAAGTGAAAAGCTACTGAAACTGCATT-TGAGCTAAAATTAAACATAGTTACATATATTTACTTATACA------------------------CACACAC-ACATATATA---TTTGCATATGTTATTTTGTT-TTT------ACTAA-----TCTAATA--ATTTGTTTATAGAG---------TATTTTAATTTTAAAAA-------------------ACTTGT----------------------------CTAAAATCATTCTGCTTTA------GTGCAAATACAAAGTGTATAATTATTGTAGCACATAAAAAACCAAACAAAACAACAATAACAGCAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................ACTGAAACTGCATT-TGAGC..........................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 05:30 PM