ID:

dsi_28924

 Coordinate:

3l:11527685-11527834 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.2 -17.0

Flybase annnotation

CDS [3l_11527835_11528029_-]; exon [3l_11527835_11528532_-]; intron [3l_11527188_11527834_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCTACCGGGAAAGTTGTAAGTACCGTTGCCGATTTCCCGTACATCCAGTGCCTAATTCCAATGCAGCTGCCTTTTTATATTTTTATGGTGGTGGGATCGTCACACCACTGCGCCCGCGCGCATGTGTGAGAGCTCCTAGTGGTGGTGGTGGTTTTCACTCCCTTACCTCTCCCCTACCATCCCATCCTTCTCACTTACTTACTTCTCCATCTTAC
**************************************************************************************************************.................(((.((.((((((...(((((....))))).)))))))).)))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
..............................................................................................................TATATTTTTATGGTGGTGGGA....................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................................CGCGCGCATGTGTGAGAGCTC................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0
........................ATGTGCCGCGTCCGAC.................................................................................................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0
..............................................AGTTGTAAGTACCGTTGCCGA....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................GGTTTTCACTCCCTTACCTC.............................................. 20 0 1 1.00 1 0 0 0 0 0 1 0
...................................................TAAGTACCGTTGCCGATTTCCT................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................GTGAGAGCTCCTAGTGGTGGT..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................GAGAGCTCCAAGTGG......................................................................... 15 1 20 0.15 3 1 0 1 0 1 0 0
..........................................................................................................................................................................CTCGTGGTGGTCGTGGTTT............................................................. 19 2 9 0.11 1 0 1 0 0 0 0 0
...................................................TATGTACAGTTGCGGATTTC................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 1
............................................ACAGTTGTAAGTCCCGT............................................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 0 0 0 1
.......................................................................................................................................................................CTCGTGGTGGTCGTGGTGGTTTT............................................................ 23 3 13 0.08 1 0 1 0 0 0 0 0
............................................ACAGTTGTAAGTCCCGTTA........................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 1
..............................................AGTTGTAAGTCCCGTTACT......................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 1 0 0 0
...........................................CACAGTTGTAAGTCCCGTT............................................................................................................................................................................................ 19 3 18 0.06 1 0 0 1 0 0 0 0

Anti-sense strand reads

AGCGGCACGAGTTACCGTTGTTGTTACACGGCGCAGGATGGCCCTTTCAACATTCATGGCAACGGCTAAAGGGCATGTAGGTCACGGATTAAGGTTACGTCGACGGAAAAATATAAAAATACCACCACCCTAGCAGTGTGGTGACGCGGGCGCGCGTACACACTCTCGAGGATCACCACCACCACCAAAAGTGAGGGAATGGAGAGGGGATGGTAGGGTAGGAAGAGTGAATGAATGAAGAGGTAGAATG
********************************************************************************.................(((.((.((((((...(((((....))))).)))))))).)))************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 GSM343915
embryo
...........................................................CAACTGCTAAAGGGGATG............................................................................................................................................................................. 18 2 2 2.50 5 0 0 0 0 0 4 0 0 1 0
..............................................TCAACATTCAGGGCAA............................................................................................................................................................................................ 16 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GAGGGAATGGAGAGGGGAT....................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CGCGCGTACACACTCTCGAGG............................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGAGGGAATGGAGAGGGGATG...................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................ACGGCTAAAGGGCATGTAGG......................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................TGTAGGTCACGGATTAAGGTT.......................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................AGGGCATGTAGGTCACGGATT................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGAGAGGGGATGGTAGGGT............................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGTGAATGAATGAAGAGGTAG.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................TCATGGCAACGGCTAAAGGGC................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................GGCTAAAGGGCATGTAGGTCA...................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................AGTGTGGTGACGCGGGCGCGC............................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................GCGCAGGCTGGCCCTTTCAAC....................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................CGGCTAAAGGGCATGTAGGTCAC..................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................AGAGGGGATGGTAGGGTAGGAA.......................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.....................TGTTACACGGCGCAGGCTGGC................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGGATGGTAGGGTAGGAAGA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................TCAACATTCAGGGCAAT........................................................................................................................................................................................... 17 2 6 0.67 4 4 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGGTAGGGGAGGGAGAGTG..................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1
..............................................................................AGGTCACGGATGGAGGTT.......................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
........................................................................GCCTGTAGGTCATGGAT................................................................................................................................................................. 17 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..............................................TCAACATTCAGGGCA............................................................................................................................................................................................. 15 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
............................................TGTCAACATTCAGGGCAA............................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
............................................TGTCAACATTCAGGGCAAT........................................................................................................................................................................................... 19 3 17 0.12 2 2 0 0 0 0 0 0 0 0 0
...........................................GTGTCAACATTCAGGGCAA............................................................................................................................................................................................ 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGGGATGGTAGGGAAT............................. 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0
............................................TGTCAACATTCAGGGCA............................................................................................................................................................................................. 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGAGACGGGAAGGTAGGG................................ 18 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.............................................GTCAACATTCAGGGCAA............................................................................................................................................................................................ 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..........................................................CCAACTGCTAAAGGGGATG............................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0
..........................................................GCAATGGCTAAGGGGCA............................................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTGGTGAGGCGGGC................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CAAAAAGTGAGGGAA................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................CTGGGGGAATGGAGAG............................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................GTCAACATTCAGGGCA............................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGAGAGGGAATGGTT................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:27 AM