ID:

dsi_28898

 Coordinate:

3r:4566011-4566160 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4566161_4566268_-]; five_prime_UTR [3r_4566161_4566268_-]; intron [3r_4554526_4566160_-]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAAAAAACAAAAGCAAAACAAAAAACTGAAAACGAAAAAACAAACAAAAGTGAGCACGATATATGATAAAATCAAAGAAAGGCAAAATAACAAACGAAATATATACATATAACGCATACATTGGTATATGTAGATACATAAGTACATACATCGCGCCGAAATAACTTTAGAATAAACAGAACGCCAATTGAACTGAAAACACATGTGTCAAATGCTGAAATTAAGAGAAACAAAGAAACGCTCTCTAAA
**************************************************....((.((((.((((......................................(((((((.((.((.....)))))))))))..(((....))))))).)))).))....................(((..((.....))..)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................CTCCGAAATAACTTTAGG.............................................................................. 18 2 2 2.00 4 4 0 0 0 0 0
......................................................................................................................................................................................CGCCAATTGAACTGAAAACACATG............................................ 24 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................CCGAAATAACTTTAGG.............................................................................. 16 1 4 0.50 2 2 0 0 0 0 0
.............................................................................................................................................................CGAAATAACTTTAGG.............................................................................. 15 1 9 0.33 3 3 0 0 0 0 0
.....................................................................................................................................................................CTTTAGAATGTACAGAATGCC................................................................ 21 3 4 0.25 1 0 0 1 0 0 0
........................................................................................................................................................CGCTCCGAAATAGCTTTA................................................................................ 18 2 5 0.20 1 0 0 0 1 0 0
........................................................................................................................................................CTCTCCGAAATAGCTTTAG............................................................................... 19 3 17 0.12 2 0 0 2 0 0 0
........................................................................................................................................................CTCTCCGAAATAACTTTA................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0
.........................................................................................................................................................................AGAGTAAACATATCGCCAAT............................................................. 20 3 10 0.10 1 0 0 0 0 0 1
.......................................................................................................................................................TCTCTCCGAAATAGCTTTAG............................................................................... 20 3 11 0.09 1 0 0 0 1 0 0
..........................................................................................................................................................CTCCGAAATAACTTT................................................................................. 15 1 15 0.07 1 1 0 0 0 0 0
.....................TAAGACTGAAAACGAAAAAAAAA.............................................................................................................................................................................................................. 23 3 15 0.07 1 0 0 0 0 1 0
..........................CTGAAAACGTAAAAAAAAA............................................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 1 0
...........................................................................................................................................................TCCGAAATAACTTTAGG.............................................................................. 17 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TATTTTTTGTTTTCGTTTTGTTTTTTGACTTTTGCTTTTTTGTTTGTTTTCACTCGTGCTATATACTATTTTAGTTTCTTTCCGTTTTATTGTTTGCTTTATATATGTATATTGCGTATGTAACCATATACATCTATGTATTCATGTATGTAGCGCGGCTTTATTGAAATCTTATTTGTCTTGCGGTTAACTTGACTTTTGTGTACACAGTTTACGACTTTAATTCTCTTTGTTTCTTTGCGAGAGATTT
**************************************************....((.((((.((((......................................(((((((.((.((.....)))))))))))..(((....))))))).)))).))....................(((..((.....))..)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
.....................................................TCGTGCTATATACTATTTTAGTT.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
...................................................................................................................................................................TTGAAATCTTATTTGTCTTGCGGTT.............................................................. 25 0 1 1.00 1 0 1 0
............................................................................................................................................................................................................AAACAGTTTACGACTT.............................. 16 1 12 0.08 1 1 0 0
..................................................................................................................................................................................TCTTGCGGTAAACTT......................................................... 15 1 17 0.06 1 1 0 0
............................................................................................................................................................GGCGTTGTTGAAATCTT............................................................................. 17 2 20 0.05 1 0 0 1

Generated: 04/24/2015 at 09:48 AM