ID:

dsi_28882

Coordinate:

3l:8146128-8146189 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-12.0	-12.0	-11.1	-11.0

Flybase annnotation

exon [3l_8145944_8146127_+]; CDS [3l_8145944_8146127_+]; CDS [3l_8146190_8146377_+]; exon [3l_8146190_8146377_+]; intron [3l_8146128_8146189_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------################################################## GGCCTGAAGATCACTGTGAGCATACCCAATTGCTCAGAAGGCCTGGTTGTGTGAGTAAAGTTTTTACTGCCCCTTGAATGACTCACTGAGCGTCATAATGCTCCTATTACAGCCTCCACGATGCAGAGAGCAATACTATTATTGCCACCTATGAGATATCCA ************************************************............................((.......((((((....))))))......)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries
..CCTGAAGATCACTGTGAGC.............................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
......................................................................CCCTTGAATGACTCACTG..........................................................................	18	0	1	2.00	2	0	2	0	0	0
.........ATCACTGTGAGCATACCC.......................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
...CTGAAGATCACTGTGAGCATACCC.......................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
......AAGATCACTGTGGGATTACC........................................................................................................................................	20	3	6	0.50	3	0	0	3	0	0
.GCCTGAAGAACACTGCGA...............................................................................................................................................	18	2	7	0.14	1	0	0	0	1	0
..CCTGAAGATCACTGA.................................................................................................................................................	15	1	13	0.08	1	0	0	0	0	1

Anti-sense strand reads

CCGGACTTCTAGTGACACTCGTATGGGTTAACGAGTCTTCCGGACCAACACACTCATTTCAAAAATGACGGGGAACTTACTGAGTGACTCGCAGTATTACGAGGATAATGTCGGAGGTGCTACGTCTCTCGTTATGATAATAACGGTGGATACTCTATAGGT ************************************************............................((.......((((((....))))))......)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
.........................................................................................................................ACGTCTCTCGTTATG..........................	15	0	1	1.00	1	1	0	0
........................................................................................................................AACGTCTCTCGTTATGCT........................	18	2	8	0.13	1	1	0	0
.........................................................................................................................ACGTCTCGCGTCATGA.........................	16	2	20	0.10	2	0	2	0
.......................................................................................CTCGCAGCATTATGA............................................................	15	2	20	0.10	2	0	2	0
.................................................................................GAGTGACTCGCTGTACTAG..............................................................	19	3	13	0.08	1	0	0	1

Generated: 04/24/2015 at 10:42 AM