ID:

dsi_28876

 Coordinate:

3r:15927986-15928266 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.1 -36.9 -36.9

Flybase annnotation

exon [3r_15928267_15928354_-]; CDS [3r_15928267_15928354_-]; exon [3r_15927914_15927985_-]; CDS [3r_15927914_15927985_-]; intron [3r_15927986_15928266_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTACACTTCTGCCGACGAGAAGGATCATGACGAGGCTCCCAGGATTAAGGTAACTCAATGCTTCCAATGTGGATACATTGGATGTATGTATATGTCTGGTCCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGATACTTTGCACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCGGTTCGAACTTTTTCCGAATACACTCCAGTGCTTAATGATTTGACTTTTGAAATTACTACCCCATTCTTCTACATTCATATGTAAATCAAATGTTACTTATTATAGAACACTAATGCTTACACTCAAAAATATATTTTTTATGCAGATCCAGAAGATTTCTGGCGATGATGATGGCGTCTTGGATAATGCCAACGA
****************************************************************(((((((....))))))).....(((((.((((((......)))))).))))).(((((((((((((.(((((...)))))..........((((((...........))))))..(((((((............)))))))(((....)))......))))))..))))))).............*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
...............ACGAGACGGATCATG............................................................................................................................................................................................................................................................................................................................................................... 15 1 4 1.25 5 5 0 0 0 0 0 0
..................AGAAGGATCATGACGAGGCTTT..................................................................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
........TCTGCCGACGAGAAGGATCAT................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
........TCTGCCGACGAGAAGGA.................................................................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TGACTTTTGAAATTACTACCCCAT................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0
....................AAGGATCATGACGAGGCTC...................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................CCAATGTGGATACATTGGA.......................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GATGCAGATCCGGAAGATTAC.................................... 21 3 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCTTGATGATTTGA........................................................................................................................................................ 15 1 18 0.17 3 0 0 2 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................................CTGATGGCGTGTGGGATAA......... 19 3 18 0.11 2 0 2 0 0 0 0 0
.......................................CCAGGATGAAGGTAA....................................................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................TATGCAGATCCGGAACA........................................ 17 2 17 0.06 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCTTAATGATTCGA........................................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GAAGATGATGGCGTC................. 15 1 20 0.05 1 1 0 0 0 0 0 0
..............................................................TTCCAACGTGGATACCCTG............................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

ACATGTGAAGACGGCTGCTCTTCCTAGTACTGCTCCGAGGGTCCTAATTCCATTGAGTTACGAAGGTTACACCTATGTAACCTACATACATATACAGACCAGGTCACCTGTTTACGTGAAGTTTTATTTAGGGTTTCTATGAAACGTGTGATATTACAGTTGGGGTTCATTAAACTGTTTATAAGCCAAGCTTGAAAAAGGCTTATGTGAGGTCACGAATTACTAAACTGAAAACTTTAATGATGGGGTAAGAAGATGTAAGTATACATTTAGTTTACAATGAATAATATCTTGTGATTACGAATGTGAGTTTTTATATAAAAAATACGTCTAGGTCTTCTAAAGACCGCTACTACTACCGCAGAACCTATTACGGTTGCT
***********************************************************************************************************************************(((((((....))))))).....(((((.((((((......)))))).))))).(((((((((((((.(((((...)))))..........((((((...........))))))..(((((((............)))))))(((....)))......))))))..))))))).............**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
.......................................................AGTGATGAAGGTTACACCCAT................................................................................................................................................................................................................................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAAAGGCTTATGTG............................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............GCTGCTGTTCCTAGTACTGGT........................................................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AATACGTCTAGGTCTTCTAAA..................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CTTGTGATTACGAATGTG......................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................ACGTTAAGTTTTATTTAGAGTAT..................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................TACTGCTCCGAGGTTCGT................................................................................................................................................................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAGGCTTAAGTGGGGTCA...................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................GGCTAATAAGATGTAAGTAGA................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ACATTTAGTTTACAA..................................................................................................... 15 0 6 0.33 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................TGCCGCTACTAGTACCGCAGA................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0
...................................................ATTTATTCACGAAGGTTACACCT................................................................................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................................TACGTCTAGGCCTTGTA....................................... 17 2 20 0.25 5 0 0 0 5 0 0 0 0 0
......................................................................................................................................................................................................AGGCTTATGTGTGGTC....................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................AAAACGTGCATGATGGGGTA................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................AAAAGGCTTATGTGAT.......................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................ACAAGGCTTAAGTGGGGTCA...................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................ACATTTAGTTTACAAT.................................................................................................... 16 0 5 0.20 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................................AAAAAAAACATCTTGGTCTTCT........................................ 22 3 6 0.17 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TTAGTTTACAATGAAAAA.............................................................................................. 18 1 7 0.14 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................TATCTTGTGATTAGGAATT........................................................................... 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................ATACGTTTAGTTTACAAT.................................................................................................... 18 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..............CTGCTCTGCCTAGTACC.............................................................................................................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0
.......................................................AGTTAGGAAGGATACA...................................................................................................................................................................................................................................................................................................................... 16 2 19 0.11 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAAGGCTTAAGTGGGGTCA...................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 1 0 0 0
............................ACTGCTCCGAGGTTCGT................................................................................................................................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0
.....................................AGGGTCCTACTTCCCGTGAG.................................................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AGAGTGAACAAGGCTTATGT............................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AGGCTTAAGTGGGGTCA...................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................AAAATACTTCTAGGTCGT.......................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AACTACGTCTAGGCCTTGTA....................................... 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0
.....................................................TGAGTTTCGAAGGTTAT....................................................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ACATTTAGTTGACAA..................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................TACTATCTCGTGATCACG............................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................AAGAAGAAGTAAGTA..................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGGTCACGTATTACTAG........................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15927936-15928316 - dsi_28876 TGTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCCAGGATTAAGGTAACTCAATGCTTCCAATGTGGATACATTGGATGTATGTATATGTCTG------------------------------------------------GT--------CCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGAT-----------------------------------------------------------------------------------------------ACTTTG-------------------------------------CACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCGGTTCGAACTTTTTCCGAATACAC--TCCAGTGCTTAATGATTTGACTTTTGAAATTACTACCCCAT-TCTTCT-------ACATTCATATGTAAATCAAATGTTACTTATTA--TAGAACACTAATGCTTACACTCAA----AAATATATTTTTTATGCAGATCCAGAAGATTTCTGGCGATGA---TGATGGCGTCTTGGATAATGCCAACGA
droSec2 scaffold_0:16796459-16796852 - TGTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCCAGGATTAAGGTAATTCGATGCTTCCAATGTGGATACATTGGATGTATGTATATGTCTG------------------------------------------------GTCTAGGACTCCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGAT-----------------------------------------------------------------------------------------------ATTTTG-------------------------------------CACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCAGTTCAAACCTTCTCCGAATACAC--TCTAGTGCTTAATGATTTGACTTTTGAAATTACTACCCCATATCTTCT-------ACATTCATATGTAAATCAAATGTTACTTATTA--TAGAACACTAATGCTTACACTCAAAAAAAAATATATTTTTTATGTAGATCCAGAAGATTTCTGGCGATGA---TGATGGCGGCTTGGATAATGCCAACGA
dm3 chr3R:5085014-5085403 + TGTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCTAGGATAAAGGTAATTCGATGCTTCCAATTTGGATACATTGGATGTATGTATATGTCTG------------------------------------------------GTGTAGGACGTCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGAT-----------------------------------------------------------------------------------------------ACTTTG-------------------------------------CACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCGGTTCGAACTTTGTCCGAATACAATATATAGTGCTTAATGATTTGACTTTTGAAATTACTAACCCATATCGTCTCATATGAACATTCATATGTAAATTAAATGTTACTTA-----TATATCGCTAATG------CTCTA----AAATATATTTTTTATGCAGATCCAGAAGATTTCGGGCGACGA---TGATGGCGGCCTGGATAATGCCAACGA
droEre2 scaffold_4770:16511047-16511412 - TGTACACCTCTGCTGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCAGGACGAGTCCCCCAGGATAAAGGTAATTCGACACTGCGTATGCGGATATATAGCATGT----ATATGTATG------------------------------------------------GCAGAGGATTCCTGCAAACTAATACACTTAAAAATAAATCTGAAAGAT-----------------------------------------------------------------------------------------------AATTTC-------------------------------------CACATTATAGTGTCAACCCCAAGTAATTTGACACACATTCCGCTCGAAGTTTCTCCAA----AC--TATAGTGTCTAA-GATTTGACTTCTTAAATTACTAACCCATATCTTCT-------AC----ATGTGTAAATCAAA-----------A--AAGAACACCAATGTTTACACTCTA----AAAAATCTTTATTGTGCAGATCCAGAAGTATTCGGGCGACGA---TGACGGCAGCTTGGGCAATGCCAACGA
droYak3 3R:9140279-9140642 + TGTACACCTCTGCGGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCAGGATGAGGCTCCCAGGATAAAGGTAATTCGATACCCATTATGCGGATGCAT-----------ATATGTATT------------------------------------------------GCGGAAGATTGCCTTCAAGAAATACACTTCAAATAAAATCCCACAGAT-----------------------------------------------------------------------------------------------ACTTTC-------------------------------------CACATTATAATTTCAACACCAAGTAATTTGACACACATTCAGTTCGGACTTTCTCCAAAA--AC--TATAATGCCTATTGACTATACTTCTGAAATTACAAAACCATATCTTCT-------AC----ATATGTAAATCAAA-----------ATGGGGATCACCAATGTTTACACTTTT----AAATATCTTTACTGTGCAGATCCAAAAGATTTCGGGCGACGA---TGATGGCGGCTTGGGCAATGCCAACGA
droEug1 scf7180000407340:15617-15924 - TATATCACAAAGTCGAGAAGAAAGATCCGGACGATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCCAAGGATAAAGGTAAATATATGTTTAACATTTGGATACAACAAATGCATGA-------CGGTAAAAACATCCCACAATAATACGTTTCTATATAAACAATGTATTTTTGT--------TAAGTT-------------------------------------------------------TATTTGAGAGTTTTG----ATTT---CT-------------AATCAAATTTTTCCAAAGATCTTGTAGTAGT------TATAAAGAAAAACTGTCTTAAATAATGTTACCTTATATATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTACATAGATACAGAAAATTTCGGGCGCCGACGATGATGGAGGCTTGGACAATCCCAACGA
droBia1 scf7180000302402:7816195-7816503 + TATTGCAATCCGCCGAGACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACAGGACGAGGGCCCCAGAATCAAGGTAAC--ATTGTTTATAAACAACATCCATACCATATACATATGTATTTA-----------------------------------------------TGT--------TCAATGTACA-TCGTACATACTTACACATGCTAAAGATCTACACTGTATGTATTTTTGGCTACAGTGAGAAATTGAAGGGACTTCCTCTATGCCAATAATATTATTTTATTATTCCAAAG-------------------TATAAGTAAATAATAACAAAAA---TGTATACCCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AACCTTTTTTATAATGCAGATCCAGAAAATTTCGACCGAAGA---AGATG---------------AAACCGA
droTak1 scf7180000415364:38537-38626 - TTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAACAAAAAAATAGCTAAAA---TGGGAACTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------AATTTATTTTTTAGATCCAGAAAATTTCAGACGACGA---CGATG---------------ACACCGA
droEle1 scf7180000491194:240812-241180 + TATTCCGCACCGATGTGGAGAAAGATCAGGATGAAGATGGTCCACGGATCAAGGTAATATTCTCTATAAAGTTTTGGAGTA------------ACCACAATCAGTGCTGGTGTGATGGGAACTGTAG--GGTCGTTTTGAATAGTAGAT-AATTCTAAAAGATACATTATATACTATGATCTATTAAAATGGTTGTTATAAGGTTGTTCCGACATCTA------------CAACAAATTTTCTCTATTCTCCAATGTCGCCTTCACATATATATAATATATTTATAGTTTTACATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGTTTAATAA---------------CTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAATGAATATATATTTTAGATCCAGAAAATATCGAGCGAAGACGAAGACGGCGGCTTGGACAACGCTACCGA
droRho1 scf7180000779488:299238-299572 + TATTCCGCTCCGATGTGGAGAAAGCTAAAGATGAAGATGGTCCTCGGATCAAGGTAA--CTGTCTATAAGATTCTGGAGCACAGCAAAGTGTTACCCAAAGCAGTGT---TGTGCTGGGAACAGCAGGGGGTCATTTGGAAAAATAGGTGAAATCTAAAAGACACATTCAATCTTATGATCGATTTGAATGTTTGATATAAAGGTGCTGAAACATCTGTAATGTGAGGCACTACAAA------------------------------------------------AGGTTTACAAATATTTATACT------------------------------------------------------------------------------------------------------------AATAGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTTCCTTATATTGTAGATTCAAAAAATATCAAGTGACGAAGGTGATGGCGTCTTGGATAATGCTACCGA
droFic1 scf7180000454106:2092424-2092484 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTAGATCCAGAAAATTTCGGGCGACGAAGATGACGGCGGCTTGGAAAATGCTGGCGA
droKik1 scf7180000301923:188082-188152 - AATATAAATTCCTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGATCCAGAAAATATCGGCTGAAGA---TGAAGACCAATTGGCCAGTGACAACGG
droAna3 scaffold_13340:14458326-14458389 - TATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATAGATTCAAAAAATTTCGAGCGCCGA---AGATGTCGATTTCGACAATGCCCCTGA
droBip1 scf7180000395971:712117-712197 + CACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------------------------------------------------------------------------------------------ACTTTC-------------------------------------CATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTACATAGATTCAAAAAATTTCGAGCGCCGA---AGATGACGATTACGACAATGCCACTGA
dp5 2:61650-61710 + TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGATCCATAAGATTACGCACGAGGACGCGGATGGCGGCATCGATCATGGGAACGA
droPer2 scaffold_7:2853442-2853502 + TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGATCCATAAGATTACGCACGAGGACGCGGATGGCGGCATCGATCATGGGAACGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCCAGGATTAAGGTAACTCAATGCTTCCAATGTGGATACATTGGATGTATGTATATGTCTG------------------------------------------------GT--------CCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGAT-----------------------------------------------------------------------------------------------ACTTTG-------------------------------------CACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCGGTTCGAACTTTTTCCGAATACAC--TCCAGTGCTTAATGATTTGACTTTTGAAATTACTACCCCAT-TCTTCT-------ACATTCATATGTAAATCAAATGTTACTTATTA--TAGAACACTAATGCTTACACTCAA----AAATATATTTTTTATGCAGATCCAGAAGATTTCTGGCGATGA---TGATGGCGTCTTGGATAATGCCAACGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
........TCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........TCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTTTTGAAATTACTACCCCAT-...................................................................................................................................................2411.00100000000100000000
....................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................CCAATGTGGATACATTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000010000000
droSec2
TGTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCCAGGATTAAGGTAATTCGATGCTTCCAATGTGGATACATTGGATGTATGTATATGTCTG------------------------------------------------GTCTAGGACTCCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGAT-----------------------------------------------------------------------------------------------ATTTTG-------------------------------------CACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCAGTTCAAACCTTCTCCGAATACAC--TCTAGTGCTTAATGATTTGACTTTTGAAATTACTACCCCATATCTTCT-------ACATTCATATGTAAATCAAATGTTACTTATTA--TAGAACACTAATGCTTACACTCAAAAAAAAATATATTTTTTATGTAGATCCAGAAGATTTCTGGCGATGA---TGATGGCGGCTTGGATAATGCCAACGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TGTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCTAGGATAAAGGTAATTCGATGCTTCCAATTTGGATACATTGGATGTATGTATATGTCTG------------------------------------------------GTGTAGGACGTCAGTGGACAAATGCACTTCAAAATAAATCCCAAAGAT-----------------------------------------------------------------------------------------------ACTTTG-------------------------------------CACACTATAATGTCAACCCCAAGTAATTTGACAAATATTCGGTTCGAACTTTGTCCGAATACAATATATAGTGCTTAATGATTTGACTTTTGAAATTACTAACCCATATCGTCTCATATGAACATTCATATGTAAATTAAATGTTACTTA-----TATATCGCTAATG------CTCTA----AAATATATTTTTTATGCAGATCCAGAAGATTTCGGGCGACGA---TGATGGCGGCCTGGATAATGCCAACGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---TGATGGCGGCCTGGATAA.........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGATTTCGGGCGACGA---TGAT.......................2612.0020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---TGATGGCGGCCTGGATAATGC......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCATGACGAGGCTCCTAGGATAAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGCGACGA---TGATGGCGGCC................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGGCGACGA---TGATGGCGGCCT...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAGAAGATTTCGGGCG..................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CATGACGAGGCTCCTAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGGCGACGA---TGATGGCGGCCTGGA............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTCGGGCGACGA---TGATGGC....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................AGGATCATGACGAGGCTCCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATTTCGGGCGACGA---TGATGGCGG..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCATGACGAGGCTCCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGGCTCCTAGGATAAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCATGACGAGGCTCCTAGGATAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ATGACGAGGCTCCTAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCGACGA---TGATGGCGGCCT...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................GGCTCCTAGGATAAAGGTAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTACACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACTTCTGCCGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---TGATGGCGGCCTGGATAATGCCAA...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCGACGA---TGATGGCGGCCTG..............2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGCTCCTAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..................AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCATGACGAGGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGTACACCTCTGCTGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCAGGACGAGTCCCCCAGGATAAAGGTAATTCGACACTGCGTATGCGGATATATAGCATGT----ATATGTATG------------------------------------------------GCAGAGGATTCCTGCAAACTAATACACTTAAAAATAAATCTGAAAGAT-----------------------------------------------------------------------------------------------AATTTC-------------------------------------CACATTATAGTGTCAACCCCAAGTAATTTGACACACATTCCGCTCGAAGTTTCTCCAA----AC--TATAGTGTCTAA-GATTTGACTTCTTAAATTACTAACCCATATCTTCT-------AC----ATGTGTAAATCAAA-----------A--AAGAACACCAATGTTTACACTCTA----AAAAATCTTTATTGTGCAGATCCAGAAGTATTCGGGCGACGA---TGACGGCAGCTTGGGCAATGCCAACGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGTCAACCCCAAGTAATTTGA................................................................................................................................................................................................................................2611.0011000000
droYak3
TGTACACCTCTGCGGACGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCAGGATGAGGCTCCCAGGATAAAGGTAATTCGATACCCATTATGCGGATGCAT-----------ATATGTATT------------------------------------------------GCGGAAGATTGCCTTCAAGAAATACACTTCAAATAAAATCCCACAGAT-----------------------------------------------------------------------------------------------ACTTTC-------------------------------------CACATTATAATTTCAACACCAAGTAATTTGACACACATTCAGTTCGGACTTTCTCCAAAA--AC--TATAATGCCTATTGACTATACTTCTGAAATTACAAAACCATATCTTCT-------AC----ATATGTAAATCAAA-----------ATGGGGATCACCAATGTTTACACTTTT----AAATATCTTTACTGTGCAGATCCAAAAGATTTCGGGCGACGA---TGATGGCGGCTTGGGCAATGCCAACGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................CAGGATGAGGCTCCCAGGATAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
TATATCACAAAGTCGAGAAGAAAGATCCGGACGATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCCAAGGATAAAGGTAAATATATGTTTAACATTTGGATACAACAAATGCATGA-------CGGTAAAAACATCCCACAATAATACGTTTCTATATAAACAATGTATTTTTGT--------TAAGTT-------------------------------------------------------TATTTGAGAGTTTTG----ATTT---CT-------------AATCAAATTTTTCCAAAGATCTTGTAGTAGT------TATAAAGAAAAACTGTCTTAAATAATGTTACCTTATATATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTACATAGATACAGAAAATTTCGGGCGCCGACGATGATGGAGGCTTGGACAATCCCAACGASizeHit CountTotal NormTotal
No Reads
droBia1
TATTGCAATCCGCCGAGACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACAGGACGAGGGCCCCAGAATCAAGGTAAC--ATTGTTTATAAACAACATCCATACCATATACATATGTATTTA-----------------------------------------------TGT--------TCAATGTACA-TCGTACATACTTACACATGCTAAAGATCTACACTGTATGTATTTTTGGCTACAGTGAGAAATTGAAGGGACTTCCTCTATGCCAATAATATTATTTTATTATTCCAAAG-------------------TATAAGTAAATAATAACAAAAA---TGTATACCCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AACCTTTTTTATAATGCAGATCCAGAAAATTTCGACCGAAGA---AGATG---------------AAACCGASizeHit CountTotal NormTotal
No Reads
droTak1
TTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAACAAAAAAATAGCTAAAA---TGGGAACTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------AATTTATTTTTTAGATCCAGAAAATTTCAGACGACGA---CGATG---------------ACACCGASizeHit CountTotal NormTotal
No Reads
droEle1
TATTCCGCACCGATGTGGAGAAAGATCAGGATGAAGATGGTCCACGGATCAAGGTAATATTCTCTATAAAGTTTTGGAGTA------------ACCACAATCAGTGCTGGTGTGATGGGAACTGTAG--GGTCGTTTTGAATAGTAGAT-AATTCTAAAAGATACATTATATACTATGATCTATTAAAATGGTTGTTATAAGGTTGTTCCGACATCTA------------CAACAAATTTTCTCTATTCTCCAATGTCGCCTTCACATATATATAATATATTTATAGTTTTACATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGTTTAATAA---------------CTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAATGAATATATATTTTAGATCCAGAAAATATCGAGCGAAGACGAAGACGGCGGCTTGGACAACGCTACCGASizeHit CountTotal NormTotal
No Reads
droRho1
TATTCCGCTCCGATGTGGAGAAAGCTAAAGATGAAGATGGTCCTCGGATCAAGGTAA--CTGTCTATAAGATTCTGGAGCACAGCAAAGTGTTACCCAAAGCAGTGT---TGTGCTGGGAACAGCAGGGGGTCATTTGGAAAAATAGGTGAAATCTAAAAGACACATTCAATCTTATGATCGATTTGAATGTTTGATATAAAGGTGCTGAAACATCTGTAATGTGAGGCACTACAAA------------------------------------------------AGGTTTACAAATATTTATACT------------------------------------------------------------------------------------------------------------AATAGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTTCCTTATATTGTAGATTCAAAAAATATCAAGTGACGAAGGTGATGGCGTCTTGGATAATGCTACCGASizeHit CountTotal NormTotal
No Reads
droFic1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTAGATCCAGAAAATTTCGGGCGACGAAGATGACGGCGGCTTGGAAAATGCTGGCGASizeHit CountTotal NormTotal
No Reads
droKik1
AATATAAATTCCTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGATCCAGAAAATATCGGCTGAAGA---TGAAGACCAATTGGCCAGTGACAACGGSizeHit CountTotal NormTotal
No Reads
droAna3
TATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATAGATTCAAAAAATTTCGAGCGCCGA---AGATGTCGATTTCGACAATGCCCCTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------------------------------------------------------------------------------------------ACTTTC-------------------------------------CATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTACATAGATTCAAAAAATTTCGAGCGCCGA---AGATGACGATTACGACAATGCCACTGASizeHit CountTotal NormTotal
No Reads
dp5
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGATCCATAAGATTACGCACGAGGACGCGGATGGCGGCATCGATCATGGGAACGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCACGAGGACGCGGATGGCGGCA................2616.0060000000510
droPer2
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGATCCATAAGATTACGCACGAGGACGCGGATGGCGGCATCGATCATGGGAACGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 09:48 PM