ID:

dsi_28856

 Coordinate:

2r:5100918-5101067 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.6 -26.6 -26.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGAAACAAAATTTCTCCACTGAACGATTAAGAAAGAGCGTACCCGAAAAGAGAACCGAAAGAGAATGCTAATTGACAATGTCCTGGCACTTTAGTTACGTTTCTTTTGCGTTATAACGGGCTTGCACAAGCCCATCGAGCGATCTGATCCAGGATCTAATTCTCTACATACCTCTTCCCAAATACCACTCCCAACCGCAGGTTCGAGAAGCTGGACATCACACCAAAGAGCGCACAGAAGATTAAGCCTG
**************************************************..((((((((((((..(((((.((.((......)).))..)))))....))))))))).))).....((((((....))))))...(((.(((..((((...))))..))))))....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
..............................................................................TGTCCTGGCACTTTAGTTACG....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................CCATCGACCGATCTG........................................................................................................ 15 1 6 0.67 4 0 4 0 0 0
........................................................................................................................................GACCGATCTGATCAAGGATGT............................................................................................. 21 3 3 0.33 1 0 0 0 1 0
....................................................................................................TTCTTTCGCGTTAGAACG.................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0
.........................ATCAAGAAAGAGCGT.................................................................................................................................................................................................................. 15 1 13 0.15 2 0 0 2 0 0
....................GAACGATTAACGAATAGCGT.................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0
..........................................CCGAAAACAGAACCGAAAAA............................................................................................................................................................................................ 20 2 14 0.07 1 0 1 0 0 0
.......................................................................................................................................AGAGCAATATGATCCAGGA................................................................................................ 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

ACTTTGTTTTAAAGAGGTGACTTGCTAATTCTTTCTCGCATGGGCTTTTCTCTTGGCTTTCTCTTACGATTAACTGTTACAGGACCGTGAAATCAATGCAAAGAAAACGCAATATTGCCCGAACGTGTTCGGGTAGCTCGCTAGACTAGGTCCTAGATTAAGAGATGTATGGAGAAGGGTTTATGGTGAGGGTTGGCGTCCAAGCTCTTCGACCTGTAGTGTGGTTTCTCGCGTGTCTTCTAATTCGGAC
**************************************************..((((((((((((..(((((.((.((......)).))..)))))....))))))))).))).....((((((....))))))...(((.(((..((((...))))..))))))....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 M023
head
 M025
embryo
..............................................................................................................................................AGACTCGGTCCTAGTTTGAGAG...................................................................................... 22 3 1 9.00 9 3 0 3 0 0 0 2 1 0 0 0 0
...............................................................................................................................................GACTCGGTCCTAGTTTGAGAG...................................................................................... 21 3 2 9.00 18 0 0 0 9 0 8 0 0 0 0 1 0
..............................................................................................................................................AGACTCGGTCCTAGTTTGAGA....................................................................................... 21 3 4 3.75 15 7 0 5 0 0 0 1 1 1 0 0 0
..........................................GGCTTTTGTCTTGGCTTTCACT.......................................................................................................................................................................................... 22 2 2 3.00 6 0 3 0 0 3 0 0 0 0 0 0 0
.......................................ACGGGCTTTTGTCTTGGCTTTCACT.......................................................................................................................................................................................... 25 3 2 2.50 5 0 2 0 0 3 0 0 0 0 0 0 0
.........................................GGGCTTTTGTCTTGGCTTTCACT.......................................................................................................................................................................................... 23 2 2 2.00 4 0 3 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGTTGGCGTCCAAGG............................................. 15 1 4 2.00 8 8 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGACTCGGTCCTAGTTTGAG........................................................................................ 20 3 12 1.25 15 11 0 1 0 0 0 1 1 1 0 0 0
..........................................GGCTTTTGTCTTGGCTTTCACTT......................................................................................................................................................................................... 23 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.........................................GGGCTTTTGTCTTGGCTTTCACTT......................................................................................................................................................................................... 24 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................ATGGGCTTTTGTCTTGGCTTTCAC........................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................TAGACTCGGTCCTAGTTT........................................................................................... 18 2 5 1.00 5 4 0 1 0 0 0 0 0 0 0 0 0
......................................CATGGGCTTTTCTCTTGGC................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................AGACTCGGTCCTAGTTTTAGA....................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTAACTGTTACAGGACCGTGAAATCA........................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................AGACTAGGTCCTAGATTAAGAGATGT.................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................GGCTTTTGTCTTGGCTTTCACTTG........................................................................................................................................................................................ 24 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................ACGGGCTTTTGTCTTGGCTTTCACTT......................................................................................................................................................................................... 26 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TAGACTCGGTCCTAGTTTGAG........................................................................................ 21 3 3 0.67 2 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................TCCTAGATTAAGTGA..................................................................................... 15 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................AGGGCTTTTGTCTTGGCTTTCACT.......................................................................................................................................................................................... 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................TGGGCTTTTGTCTTGGCTTTCAC........................................................................................................................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGACTCGGTCCTAGTTT........................................................................................... 17 2 20 0.45 9 0 0 0 0 0 0 0 3 6 0 0 0
...........................................................................................................................................GCGAGACTCGGTCCTAGTTT........................................................................................... 20 3 10 0.20 2 0 0 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................TAGACTCGGTCCTAGTT............................................................................................ 17 2 20 0.20 4 3 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................CGACCTGGAGTGTGGT......................... 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................TGAGGGTTGGTGTCTAAACT............................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAAGAGATGGATGGA............................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................TAGACTCGGTCCTAGCTT........................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GCCGGTACGTGATCGGGTAG.................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TAGACTCGGTCCTAG.............................................................................................. 15 1 15 0.13 2 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................GGTGTATGGAGAAGG........................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................CGAATAATTGTTACAGGAC..................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GTCCTAGATAAAGTGAT.................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCGGGTAGCTCGCTG........................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................CGTGTCTTATAATTC.... 15 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................GAAGGCGTCCAAGCTCTCC........................................ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................AGTGTCGTTTCTCGC.................. 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCGTTATACTAGGTCCT................................................................................................ 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................GTCTAGGTCCGAGATTA.......................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................CGAATAATTGTTACAGGA...................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................AGACTAGGTACTAGA............................................................................................. 15 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................GAAGGCGTCCAAGCTC........................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................CGCAAGATTGCACGAA............................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/23/2015 at 09:36 AM