ID:

dsi_28855

 Coordinate:

3l:7372799-7372948 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -39.0 -39.0

Flybase annnotation

CDS [3l_7372506_7372798_+]; exon [3l_7372309_7372798_+]; intron [3l_7372799_7377178_+]

No Repeatable elements found

mature
  1. 2l:18143531-18143545 -
  2. dsi_28855  3l:7372893-7372907 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATATGAACTTCAACTTGTACAAGCTACGGATGCAGTGGAACAGTCTAAAGTGAGTTGAGTCATCGATTCGGTTGCGCTTTTCGAGATCAGGAGCCAAATAGCTCTATAAGGGGTTTCCCAGCTGTGGTGTAGATTCTATTCAAATTCCTTTGCTGAGTCACTAGATTCTAGAAGCAGACTAAAAAGTCGCAACTTTACATTTGCCAACTAAGAGTGTTGGTTGTTATAGATACATTCCATATATTGTTA
**************************************************..(((((((....)))))))((((((((((((...((((....((((..(((((......(((....))))))))))))...)))).............(((((((((((....)))))....))))))...))))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................................................AGACTAAAAAGTCGGAGC........................................................ 18 2 4 9.00 36 0 26 10 0 0 0 0
......................................................................................................................................................................................................................GTGTTGGTTGATATAGA................... 17 1 3 6.33 19 15 0 0 4 0 0 0
.....................AAGCTACGGATGCAGTGGAACAGTCT........................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0
..................................................................................................................................................................................................................AAAGGTGTTGGTTGATATAGA................... 21 3 4 1.25 5 4 0 0 1 0 0 0
.......................................................................................................................................................................................................................TGTTGGTTGATATAGA................... 16 1 3 1.00 3 3 0 0 0 0 0 0
................................................................................................................................................ATTCCTTTGCTGAGT........................................................................................... 15 0 2 0.50 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................GTTGGTTGATATAGA................... 15 1 11 0.45 5 3 0 0 2 0 0 0
...............................................................................ATTCGAGATCAGGAGC........................................................................................................................................................... 16 1 11 0.36 4 0 0 0 0 0 0 4
......................................................................................................................................................................................................................GTGTTGGTTGATATA..................... 15 1 15 0.33 5 4 0 0 1 0 0 0
......................................................................................................................................................................................................................GTGTTGGTTGATATAG.................... 16 1 7 0.14 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GTGTTGGTTGATACAGA................... 17 2 9 0.11 1 1 0 0 0 0 0 0
..................................................................................CGCGATCAGGAGCCAAT....................................................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0
..................................................................ATGCGGTTGCGGTTTTCG...................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 1 0 0 0
........................................................................................................................AGCTGTTGTGTAGACTC................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 1 0
.........................TAGGGACGTAGTGGAACA............................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0
................................................................................................................................................................................AGACTAAAAAGTCGAAGCC....................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................GACTAAAAAGTCGGACCC....................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GTTGGTTGATATAGACA................. 17 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CTATACTTGAAGTTGAACATGTTCGATGCCTACGTCACCTTGTCAGATTTCACTCAACTCAGTAGCTAAGCCAACGCGAAAAGCTCTAGTCCTCGGTTTATCGAGATATTCCCCAAAGGGTCGACACCACATCTAAGATAAGTTTAAGGAAACGACTCAGTGATCTAAGATCTTCGTCTGATTTTTCAGCGTTGAAATGTAAACGGTTGATTCTCACAACCAACAATATCTATGTAAGGTATATAACAAT
**************************************************..(((((((....)))))))((((((((((((...((((....((((..(((((......(((....))))))))))))...)))).............(((((((((((....)))))....))))))...))))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
................................................................................AAGCTCTAGTCCTCG........................................................................................................................................................... 15 0 1 4.00 4 1 2 0 1 0 0 0
..............................................................................AAAAGCTCTAGTCCTCGA.......................................................................................................................................................... 18 1 1 2.00 2 2 0 0 0 0 0 0
...........................GCCTACGTCACCTTGTCAGAT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................ACGCGAAAAGCCATAGTC............................................................................................................................................................... 18 2 7 0.29 2 2 0 0 0 0 0 0
...................................................................AAGTCAGCGCGATAAGCTCT................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0
............................CCTATGTCACCTTGTGAG............................................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0
....................................................................AGTCAATGCGATAAGCTCT................................................................................................................................................................... 19 3 13 0.15 2 0 0 2 0 0 0 0
...............................................................................AGAGCTCTAGTCCTCG........................................................................................................................................................... 16 1 7 0.14 1 0 1 0 0 0 0 0
............................................................................CGAAAATCTCTAGTC............................................................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0
................................................................................AAGCTCTAGTCCTCGA.......................................................................................................................................................... 16 1 10 0.10 1 1 0 0 0 0 0 0
..............................................................................................................CCCCAAAGGGTCGAGGCAA......................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0
......................................................................................................................................GAGATAAGTTTCAGGAAA.................................................................................................. 18 2 14 0.07 1 0 0 0 0 1 0 0
............................................................................................................................................................................................GCGGTGAAATGTAAA............................................... 15 1 18 0.06 1 0 0 0 0 1 0 0
..............................TACCTCCCATTGTCAGAT.......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 06:36 AM