ID:

dsi_28837

 Coordinate:

3l:11527188-11527337 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.7 -20.7 -20.6

Flybase annnotation

exon [3l_11526991_11527187_-]; CDS [3l_11526991_11527187_-]; intron [3l_11527188_11527834_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGGAAATCATTTGAAATATACTCTTTTTTTTTTTGCTTACTATATTAAGGATGCATATGTAAAAGGGATTATCTTTGTGTTTTTACTTTTATAATCCCACATTGAGTACTTTTCTTAACTGCAATATTACCAAATATAGTAAATTGACCATATTGTTGAATCGTTTCCGTTGGTGAACCTCGTCTTCTGTTCCTTCCAGCAGGTCTTTCGTGACGTCAGAAACCTTAATGTTGATGAGAATGTGGAGTA
**************************************************((((...........((((((((....(((....)))....)))))))).(((((((.......))))).)).....(((((((..........(((((......)))))..........)))))))....))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
....................................................................................................................................................................TTTCCGTTGGTGAACCTC.................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................CTTAATGTTGATGAGAATGTGGA... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTCCGTGACGTCAGAAACCTTAATG................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAGTAAATTGACCATATTGTTGAATCGTT.................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................TATACTCTATTTTTTTTTTCTTCCT................................................................................................................................................................................................................ 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGACGTCAGAAACCTTAATGTTGA............... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................AAACCTTAATGTTGATGAGAATGTGG.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................TTTTTTGCTTACTATATTAAG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCCGTGACGTCAGAAACCTTAATGTTGA............... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTCGTGACGTCAGAAACCTTA...................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGAAACCTTAATGTTGATGA............ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTTGATGAGAATGTGGAGT. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TCTCCGTTGGTGAACC...................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACCTTAATGTTGATGA............ 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CCGTTGGTGACCCTCGTG................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CTCCGTTGGTGAACC...................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCAGCTCTTCCGTGACATC................................ 20 3 15 0.13 2 0 0 0 0 0 0 0 0 2 0
.............................................TTAAGGACGCCTTTGTAAAA......................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCTCCGTTGGTGAACCA..................................................................... 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................GCATCGTTTCCGTAGGT........................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................GAATTGTTTCCGTAGGT........................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................GAACCTCGTCTTCCGCTCCA....................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.............................................TTAAGGACGCTTTTGTAAAA......................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..............................................TAAGGACGCCTTTGTAAAA......................................................................................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAATGTATAGGAGAATGTG..... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................CCATATTGTTGAGTGTTTTC.................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCCTTTAGTAAACTTTATATGAGAAAAAAAAAAACGAATGATATAATTCCTACGTATACATTTTCCCTAATAGAAACACAAAAATGAAAATATTAGGGTGTAACTCATGAAAAGAATTGACGTTATAATGGTTTATATCATTTAACTGGTATAACAACTTAGCAAAGGCAACCACTTGGAGCAGAAGACAAGGAAGGTCGTCCAGAAAGCACTGCAGTCTTTGGAATTACAACTACTCTTACACCTCAT
**************************************************((((...........((((((((....(((....)))....)))))))).(((((((.......))))).)).....(((((((..........(((((......)))))..........)))))))....))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...................................................................................................................................................................................................................ACTGCAGTCATTGGA........................ 15 1 2 1.50 3 2 0 1 0 0 0
..................................................................................AAATGAAAATATTAGGGTGTA................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................AGGCACTGCAGTCTTTGGAAT...................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................AAAAAACTAATGATAGAAT.......................................................................................................................................................................................................... 19 2 12 0.58 7 7 0 0 0 0 0
........................................................................................................................................................................................GAAGACTATGGAGGTCGTCC.............................................. 20 3 3 0.33 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GCAACTACTCTTACACGTCGT 21 3 9 0.22 2 2 0 0 0 0 0
.........................................................................................................................................................................................AAGACTAGGGAGGTCGTC............................................... 18 2 5 0.20 1 1 0 0 0 0 0
............................AAAAAAACGGATGCTAGAATT......................................................................................................................................................................................................... 21 3 12 0.17 2 0 0 0 2 0 0
...................................................................................................................................................................................................................ACTGCAGTCATTGGAAC...................... 17 2 6 0.17 1 0 0 1 0 0 0
.........................AAAAAAAAAAAGACTGATATTAT.......................................................................................................................................................................................................... 23 3 7 0.14 1 0 0 0 0 1 0
........................AAAAAGAAAACCGAATGAT............................................................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 0 0 1
.....................................................................................................................................TTATATCAGTTAACTAGCAT................................................................................................. 20 3 17 0.06 1 0 0 1 0 0 0
....TTTAGTCGACTTTAGATGAG.................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1
..................................................................................................................................................................................................................GACTGCAGTCATTGGA........................ 16 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 10:27 AM