ID:

dsi_28801

 Coordinate:

3r:20648496-20648765 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.1 -10.9 -10.9

Flybase annnotation

five_prime_UTR [3r_20648489_20648495_-]; CDS [3r_20648275_20648488_-]; exon [3r_20648766_20648988_-]; five_prime_UTR [3r_20648766_20648988_-]; exon [3r_20648275_20648495_-]; intron [3r_20648496_20648765_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACATTACTAGTACTAAAATTATATAAATAATAAATTCAAATACATTCCCGTATTTGATAAGTGCATTTTTGAAAAAAAAATAGCAAACTGAAATACTAAATGCTTAGCCATAAAATTACTATGAAAATGTAAACTGTGCAAACCAGAAATGCAAAAGTTTTGGACTTTGAACACACTTACATCTGATGCTTTCGCTTTCGTTAACTGTTATTAAACTGAATGGGAATTACAATGTAACTTTTCTAATTGCTTTGATCTTGAACCGCTGTTCGTTTCCGCCGCGAAAGTCAATTAATTGATCTACCGTTTTCAGTATCAGCATCACAATGTCGCCAAACAACAGCGCGGAAAAGCCCGTTAATCCCAACG
******************************************************************************************************************************************************((...(((....((.....(((.....((((((.((.((.((((..(((.(((...........))).)))..)))).))))))))))...)))......)).....)))....))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................................................................................................................................................................TGCTTTGATCTTGAACCG........................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................TTGATATGTACATTTCTGAAAAAAAA.................................................................................................................................................................................................................................................................................................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................CAACAGCGCGGAAAAGCCCGT........... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................................TGCAAAAGTTTTGGACTTTGAACACACT................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................GTTTTGGACTTTGAACA.................................................................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................CTGATGCTTTCGCTT............................................................................................................................................................................ 15 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................AAACTGTTATTAACCTGAA..................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTTCGTTTCCGGCTCGAA.................................................................................... 18 2 10 0.20 2 0 0 2 0 0 0 0 0
............................................................................................................................................................TGTATTGGACTTTGAACA.................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................ATTGGACTTTGAACA.................................................................................................................................................................................................... 15 1 16 0.13 2 0 2 0 0 0 0 0 0
..........................................................TAAGGGCATTAATGAAAAAAAA.................................................................................................................................................................................................................................................................................................. 22 3 9 0.11 1 0 0 0 0 0 0 1 0
............................................................................................................................................................TGTATTGGACTTTGAAC..................................................................................................................................................................................................... 17 2 20 0.10 2 0 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................TCGTTTCCGGCTCGAAAGAC................................................................................ 20 3 12 0.08 1 0 0 0 0 0 1 0 0
.............................................................GTGCATTTTTGAAGAA..................................................................................................................................................................................................................................................................................................... 16 1 14 0.07 1 0 0 0 1 0 0 0 0
............................................................................................................................................................TGTATTGGACTTTGAACAGA.................................................................................................................................................................................................. 20 3 15 0.07 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................CTTGGACTTTGAACAAACC................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................ATTGGACTTTGAACAGA.................................................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCACAACGTCGCGAGACA.............................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................GTTCGATTCCGCCCCG...................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATGTAATGATCATGATTTTAATATATTTATTATTTAAGTTTATGTAAGGGCATAAACTATTCACGTAAAAACTTTTTTTTTATCGTTTGACTTTATGATTTACGAATCGGTATTTTAATGATACTTTTACATTTGACACGTTTGGTCTTTACGTTTTCAAAACCTGAAACTTGTGTGAATGTAGACTACGAAAGCGAAAGCAATTGACAATAATTTGACTTACCCTTAATGTTACATTGAAAAGATTAACGAAACTAGAACTTGGCGACAAGCAAAGGCGGCGCTTTCAGTTAATTAACTAGATGGCAAAAGTCATAGTCGTAGTGTTACAGCGGTTTGTTGTCGCGCCTTTTCGGGCAATTAGGGTTGC
********************************************************************************************************((...(((....((.....(((.....((((((.((.((.((((..(((.(((...........))).)))..)))).))))))))))...)))......)).....)))....))****************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
 M024
male body		 SRR902008
ovaries
 SRR902009
testis
.....................................................................AACTGTTTTTTTATCGTTTGATGT..................................................................................................................................................................................................................................................................................... 24 3 3 12.67 38 13 9 9 6 1 0 0 0 0 0
...................................................................AAAACTGTTTTTTTATCGTTTGATGT..................................................................................................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................AAAACCTGAAGCTGGGGTGAAT.............................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...............................ATTCAAGGTTATGTAAGCGCAT............................................................................................................................................................................................................................................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................................AACTGTTTTTTTATCGTTTGATG...................................................................................................................................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AGTTAGGTAACGAGATGGC............................................................... 19 3 20 0.25 5 0 0 0 0 0 0 4 0 0 1
...........................................................................................................................................................................................................................................................................................................TCGATGGCAAAGGTCAT...................................................... 17 2 14 0.14 2 0 0 0 0 2 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ACGAGATGGCAAATGTC........................................................ 17 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ACGAGATGGCAAATGTCC....................................................... 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGTGAATGACCCTTAATGTT......................................................................................................................................... 20 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACCCTTAAGGTTACA...................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TGTATGTTGTCGCGCCT.................... 17 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CTTGGAGACTAGCAAAGCC........................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................CGGTTTGATGTCACACCTTT.................. 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................CTAGGTGGCAAATCTCAT...................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................TTAAGATATTGTTTATTTAAGT........................................................................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20648446-20648815 - dsi_28801 TACAT----------------------------------TACTAGTA---------------------CTAAAA----TTATATAAATA------------------ATAAATTCAAATACATTCCCGTATTT------------------------G----------------------ATAAGTGCATTTTTG------AA----------------------------------------------------------AAAA----AAA-------------------------------------------------------------TAGCAAACTGAAATACTAAATGCTTA--GCCATAAAATTACTATGAAAA---------TG-TAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CCAGAA----A---------------------------------------------------------------------------------------------------------------------------------------TGCAA---AAGTTTTGGACTTTGAACAC-------ACTTACA--TC-----------------------------TGA--TGCTTTCGCTTTCG----TTAACTG--TTATTA-AACTGAATGGGAAT-TACAATGTAACTTTTCTAATTGCTTTGATCTTGAACCGCTGTTCGTTTCCGCCGCG--AAA-GTCAATTAATTGATCTAC-CGTTTTCAGTAT------C-------------------------AGCATCACAATGTCGCCAAACAACA---GCGCGGAAAAGCCCGTTAATCCCAACG
droSec2 scaffold_33:392548-392879 - TGCATA--------------------------------------GTACGAA---------------------AA----TTATAAAAATA------------------ATAAATTCAAATATATT---------------------------------------------------------------------CG------------------------------------------------------------------AAAA----AAA-------------------------------------------------------------TAGCAGACTGAAATACTAAATGCTTA--GCCATAAAATTACTATTAAAA---------TG-TAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CG--AA----A---------------------------------------------------------------------------------------------------------------------------------------TGCAA---AAGTTTTGGACTTTGAACAC-------AC--------------------------------------TGA--TGCTTTCGCTGTCG----TTAACTG--TTATTA-AACTGAATGGGAAT-TACAATGTAACTTTTCTAATTGCTTTGATCTTGAACCGATGTTCGTTTCCGCCGCG--AAA-GTCAATTAATTGATCCAC-CGTTTTCAGCAT------C-------------------------AGCATCAAAATGTCGCCAAACAACA---GCGCGGAAAAGCCCGTTAATCCCAACG
dm3 chr3R:21133582-21133950 - TGCAT----------------------------------TCTTTGAA---------------------CAAAAA----TT---------TACAAAATTTACGAAATT-----------TACATTCCGGTATTT------------------------G----------------------ATAAGTGCATTTTCG------------------------------------------------------------------AACA----AAA-------------------------------------------------------------TATCAGACTAATGTGCTAAATACTTA--GCCATAAAAGTACTATTAAAAAACTATTACTA-AAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CT--------G---------------------------------------------------------------------------------------------------------------------------------------TGCAA---AAA--TTGGACTTTGAACAC-------ACTAACA--CG-----------------------------TGA--TGCTTTCGCTTTCG----ATAACTG--TTATTA-AAATGAATGGGAAT-CACAATGTAACTTTTTTAATTGCTTTGATCTTGAACGGCTGTTCATTTCCTCCACG--AAA-GTCAATTAATTGATCTAC-CGTTTTCATCAT------C-------------------------AGCATCAAAATGTCGCCAAACAACA---GCGCGGAAAAGCCAGTCAATCCCAACG
droEre2 scaffold_4820:6909907-6910178 + AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAAATATTTAA-GCTGTGAT------------T---------TC-TAAGCTGTGCC----ACGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------CTGCAA----A---------------------------------------------------------------------------------------------------------------------------------------TGCAA---ATATTTTAGACTTTGATCAC-------CCTGAAA--AC-----------------------------GGA--GGCTTTCGCTTTCG----TTAACTG--TAATTA-AAATGAATGGAAAA-TGCGATGGAACTTTCTCAATTGCTTTGATCTTGAACCGCTGATCGCTTCCGCCGCG--AAA-CTCAATTAATTGATCTAC-CGCTTACAGCAT------C-------------------------AGCATCGAAATGTCGCCGAACAACA---GCTCGGAAAAGCCCCTCAATCCCAACG
droYak3 3R:25355342-25355609 + AATAA----------------------------------TC---AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATCAAAAACTAAATACTTAA-GCTGTGAT------------A---------TT-TATGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CCAAAA----G---------------------------------------------------------------------------------------------------------------------------------------TGCAA---ATATTTTAGACTTTGCTCAG-------ACA----------------------------------------------TACACTTTCG----TTAACTG--TAATTA-AAATGAATGAGAAA-TGCAACGTAACTATTTTGATTGCTTTGAACTTGAACCGCTGATCATTTCCGCCGCG--AAA-GTCAATTAATTGATCTAC-CGTTTTCAGCAT------C-------------------------AGCCTCGAAATGTCGCCAAACA------GCTCGGAAAAGCCCGTCAATCCCAATG
droEug1 scf7180000409692:245392-245836 + AGAAAAA-------------------------------------TTACGGAAATAAATTGTC------CTGAAAAAATT----------------------------C-----------TCTTTCC-GGGTT---------------------------------------------------------------------------------------------------------AATATAACTA-TTATTAAATAATAATAAAAAT------------------------------------------------------------------------------------------A-GTTGTGAA------------A---------TA-GACGTTGAATT----CTGGAACTGGCATAAATATCAATATAAAAACT---------------------------------------------ACTTAA------------------------------------------------TT---GT-------CATTGAAATGAAAATGTCTTCTAAACAA---------------------------------GACAAAA----G-------------------------------------------------------------------------------------------------CGAAAA-----GAAAGTAAACCG---------CTATT---------GAGTTTTAGACTTTGATCAC-------CCAACAA--CCTGTTCAA-TATAACGTTTTTTACATAACATAG--TGCTTTCTCATTCG----TTAACTG--CAATTA-AGATGATTTAAAAA-TTCAATGAAA-TTGTTTAATTACTGTGATCTTGAACTGCTGATCGTTTCCGCTGAGA-----GTCAACTAATTGATCTCC-CGATTACAGATTCAGC------------------------------ACCAACAATGTCGCCGAATACCA---AGTCGGAAAAGCCTGTCAATCCAAACG
droBia1 scf7180000302136:1952048-1952519 - TCGGTCGCAAG-----------T---------------------CTACGAATATGTATTGTCTTCTAGCTGAAA----A----------------------------TCAATTTAAAACAAGTTTCCGTCCTTAAAAAAATAATACAAATAAAATATTAAATTAATA------------------------------------------------------------------------------------------------------A-CCGCTAGTTCTTTAAAGTTTTATATCAGCGTTGCTTAACAAATAAAATAAAATAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAA------------------------------------------------AAAT-TGCATCCGTT--------GAATATATTATCTGAGCGA---------------------------------GAAAGAA----C-------------------------------------------------------------------------------------------------CGAAAA-----GAAAGAAAGTTG-----TTCCCTGTT---------ATATTTTCCAGTTTGTTCAA-------CAATACA--CCTGTTGAATTTTAAAGATTTTCACGTTATACGG--TGCTTTCTCTGCCG----TT----C--TAATTA-AGATGAATGGGTG--TATAATAAAA-ATGTTTAATTACTTTGATCTTGAACCGCTGATCGTTGCCGCCGAGA-----GTAAACTAATTGATTTCC-CGATTACAGCAT------C-------------------------TGCACCAAAATGTCGCCGAACAGCA---ACTCTGAGAAACCAGTCAATCCCAACG
droTak1 scf7180000413457:81583-82046 + TAAAT---------------------------------------CTACGGAAATACCTTT--------------------AAATAAACA------------------AA----------------------------------------------------------------------------------------------------TGATTT------------AAAGCTGGTGGAGCAAGTGA-TTTTTAAATA-CATTAAAAAT------------------------------------------------------------------------------------------A-TAAAATAA------------T---------TA-TATGTCGCTTACAAACATGAGTTTCAGTGAATTTCAAACAGAAAATT---------------------------------------------ATTAAA------------------------------------------------AA---TTCAAC---CATTGTAATG--------ATCTGTGTAAAGAGAAGCGTATAAAAAATGTAAATCTAAATAAGACAAAG----C-------------------------------------------------------------------------------------------------GGAAAA-----GAAAGAAAGTTT-----T-------T---------ATATTTTCGTCTTTGGTCAC-------CCAT----------C-AC-TTTTAAGATTTTCACGTAATAGGC--AGCTTTCTCTGTCG----TAAACAC--TAATTA-AAACGAACGGGAAT-TGTAATGAAA-TTGTTTAACTATTTTGATCTTGAACCGCTGATCATTTCCGTCGAGA-----GTCAATTAATTGATTTCCACGATTACAGCAT------C-------------------------AGAACAAAAATGTCGCCGAACAGCA---ACTCGGAAAAGCCAATCAATCCAAACG
droEle1 scf7180000490967:21520-21914 - TATAT----------------------------------TATCTCTA---------------------CTGAAA----T----------------------------C------------CATTTCCGAGTTT------------------------GTTTTC---------------------A---------------------------------------------------------------------------------------------------------TTGTATTTAGGGGTTTG------------------------------------------------------------------------------------------------------------------TTAATATGACTCAAAAAAGCGCTTTATATTAAAGCTTGAAACAACAGTGTGTGAAATACAATAGCATTAAA------------------------------------------------GAGT-CTCAACTGCT--------AAAAGTGGTATTTAAGTTA---------------------------------G-----------------------------------------------------------------------------------------------------------AGGAAAACTA-----------------------------AGCGAATAACATTTTGGACCTTGATCTA-------C---------CTGTT-CC-TATTGCGATTT-TACGTAATA-----TGCTTTCTATTTCG----TTAACTG--TAATTA-AAATGAA----AAA-AACGAA--------GTTAATTGCTTTGATCTTGAACCGCTGATC---TCCGCCGAGA-----GTGAATTAATTGATCTAC-CGATTACAGCAA------C-------------------------AGCAGCAGAATGTCACCGAACAACG---ACTCGGAAAAGCCACTCAATCCCAACG
droRho1 scf7180000779739:29471-29937 + TAAACTTATCAA---------------------------TCAGTTGA---------------------CAACAA----TT---------TATAA----------------------------------------AAACAATAATAAGAACACAATATATTTTAAGGAAACGAACTCACCCATAAA---------------------------------------------------------------------------------------------------------TTGTATCAAAGGTTTTGAATGTAAAAGATGTGATAAGAAAAGGAAGAATAATTAACAACTAAATATCTAAGGCCATTAA--------------------------------------------------------------------AATT---------------------------------------------ATTAAA------------------------------------------------AGGT-TTCAAC---T--------AAAAGTGTTATCTTGATTA---------------------------------A-----------------------------------------------------------------------------------------------------------AGAAAAA-----GTAAATAAATTTGA-------ATA-TAAGCAA------ATTTGGACCTTGCTCAT-------TTAAATA--CTTGAC-AC-TATTACGATTTGTACGTAATA-----TGCATTCTATTTAG----ATAACTG--TTATTA-AGATTAATGGAAAA--TCAATTAAA-GTTTTTAATTGATTTGATCTTGAAGTGCTGATCGTTTCCGCCGATA-----GTGAATTAATTGATCAAA-CAATTACAGCAT------C-------------------------AGCGCCATAATGTCTCCGAACAACA---ACTCGGAGAAGCCATTCAATCCCAACG
droFic1 scf7180000454055:1048588-1049077 - TTGCTAGACAT-----------T---------------------TTATGGATATAA---------------------TT----------------------------C-----------ACTTTCC------T------------------------C----------------------ATAAATGCAATCTGGTTTATAAAAACAAATGAACTAAATGAA---CTCAGACTTTTTAAACAAGTGA-TTT--------------------------------------------------------------------------------------------------------TCTAGTG-------------------------------------------------------------AATCGCT-----TTAATT---------------------------------------------ATTATAAAGGTTTACCTACTTTTGAGTTTAAAGACAACAACACCTACAAGTTAAAGATATTAAACCC-C--------TAATCTGTTATTTTAACCA---------------------------------A-----G-----------------------------------------------------------------------------------------------------GGGAAAACTAATGAAAGAAAGTTT-----TTGCATAATA---AA---A--AAATCGACTTTGATCAC-------TAATACACATCTGTTAAC-TATTGAGATTTTCACGTAACATAT--TGCTTTCTCTTTCG----ATAACCGACTAATTA-CAATGAATGTGAAA-TTCAATGAAA-TTGTTTAATTGCTTTGATCTTGAACCATTGATCATTTCCGCCGAGT-----GTAAATTAATTGATCTTC-CGATTGCAGCAA------C-------------------------GAATCCAGAATGTCGCCGAACAGCA---AATCGGAAAAACCAGTCAATCCCAATG
droKik1 scf7180000302355:1386009-1386141 + TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-TTGTTTAATTGCTTTGATCTTGGACTGTTGATCGTTTCCGCTGTCT-----GTCAATTAATAGATTTTTCTGATTGCAG---------C-------------------------AGCCTCAGAATGTCGCCGAACAGCA---GCTCGGAAAAGCCAGTCAATCCGAACG
droAna3 scaffold_13340:1331763-1332178 - TTAATGAAAAATTCAAAGCGAATATGTGAATAGAAATACTATGTGTG----------------------------------------------------------------------------------------------------------------------------------------------AG------CTTAAACAAATTAAAACTAACTGAAGAAATCA-------------ACAAAGCTTTC------CGATAA----A-AAGACAAATGTTGGAAGTC--------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------TTGTCAGAATGACACGGCAACTTCCCATTGTAGAATATAGTATCTACGCATTGAGAAAA-------------------AC-----TGTATTC------------------------TATAGTCACACCCAATGTAGACA-----------T-TTTAAGGTTTTC---CGATTTGCAATTCACTCGATTTAAACTGT----TC--TGGGTA-AAAATAAGATAAATGCGCATGGAAG-TTGTGTAATTACTCTGAACTTGAACCTCTAATCATTTCCTCATGTG-----CTCAATTAATTTCTATAT-TAGTTACAGTGC------C-------------------------AG--TGAAAATGTCGCCAAACAACAAAAGCGAAGATAAACCAGTGAACCCCAACG
droBip1 scf7180000396712:493157-493558 + AATAC----------------------------------TATTTGTG---------------------T--------------------------------------------------------------------------------------------------------------------------------CATAAAAAAATTAAAACTTAGTGGGGAAATCA-------------AGAAAGCTTTC------CGATAA----AAAAGACAAATGTTGAAACTC--------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTCAGAATGACACGGCAACTTCCCATTCAAGAATATAGTATCAACGCATTGAGAAAACGAATA-----CTAAATAAACCTACATGTTTCC------------------------TATAGTCACACCCAATGT---TA-----------C-GTTAAGGTTTTC---CAATATGCAATTTACTCGTCACACAGTGT----TC--TGGGTAGAAATTAAAGCGAAA-TGAATTGTAA-TTTTCTAATTGCTACGAACTTGAACCTCCAATCATTTC-GCCATGTGTATGCCCAATTAATTTGTATAT-TAATTTTAGTTC------C-------------------------AGT--GATTATGTCACCAAACAACAAAAGCGAAGAGAAACCTGTAAACCCCAACG
dp5 2:20537373-20537721 + AGTGA----------------------------------TACTCTTAAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGCTATATATGTAC--TTTCGAC------------T---------GCTT-----GCGCC----ATTCC-----------------------------------TAAATGAATGAAATTATAGTAAATTATACGTAGCGTAACTGAA------------------------------------------------CGAT-AAAGCCCGT----------------------------------------------TGTAGACTTAGATAAGTCAATAGGAAACGAAACAAGTTAGACAGTGTCTGAAAGTGTAATTTGGCCTTTCACCATGACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATTT-CTATACATAGAAAA-TGCTTTAGAG-CCGTTTTATTGTTTTGATCTTGAACCCACGATCGTTTCCGAT---------CTCTAGTCTCTGATCTCT-TACTTACAG--T------C-------------------------AGTCCCAATATGTCGCCAAACAGCA---GCTCAGAGAAGCCGGTGAATCCCAATG
droPer2 scaffold_3:3291568-3291891 + TATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAC--TTGTGAC------------T---------GCTT-----GCGCC----ATACC-----------------------------------CAAATGAATGAAATTATAGTAAATTATACGTAGCGTAACTGAA------------------------------------------------CGAT-AAAGGCCGT----------------------------------------------TCTAGACTTAGATAAGTCCATAGGAAACGAAACAAGTTAGACAGTGTCTGAAAGTGTAATTTGGCCTCTCACCATGACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATTT-CTATACATAAAAAA-TGCTTTAGAG-CCGTTTTATTGTTTTGATCTTGAACCCACGATCGTTTCCGAT---------CTCTAGTCTCTGATCTCT-TACTTACAG--T------C-------------------------AGTCCCAATATGTCGCCAAACAGCA---GCTCAGAGAAGCCGGTGAATCCCAATG
droWil2 scf2_1100000004943:13491240-13491287 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATGTCACCTAATACTA---AGTCAGAAAAGCCTCAAAATCCAAATG
droVir3 scaffold_13047:2273819-2273904 + AGGCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAGATCTTT-CAGTGCCCACTTGCATATCAGTCAGAATGCCCGATAACAGCAACAAAT--------------------------TCTGTGAATCGA-------ATGATG
droMoj3 scaffold_6540:22635328-22635408 - AGGCGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGGATC----TGTTCTCAGTTG------C-------------------------TCAGTCAGAATGCCCGATAACAGCA---ACA-AGTTCTGCGAGTCAAATCATACA
droGri2 scaffold_14906:9123293-9123329 + AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCG---ATTCTAGTAAACCTGTGAATCCCAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACAT----------------------------------TACTAGTA---------------------CTAAAA----TTATATAAATA------------------ATAAATTCAAATACATTCCCGTATTT------------------------G----------------------ATAAGTGCATTTTTG------AA----------------------------------------------------------AAAA----AAA-------------------------------------------------------------TAGCAAACTGAAATACTAAATGCTTA--GCCATAAAATTACTATGAAAA---------TG-TAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CCAGAA----A---------------------------------------------------------------------------------------------------------------------------------------TGCAA---AAGTTTTGGACTTTGAACAC-------ACTTACA--TC-----------------------------TGA--TGCTTTCGCTTTCG----TTAACTG--TTATTA-AACTGAATGGGAAT-TACAATGTAACTTTTCTAATTGCTTTGATCTTGAACCGCTGTTCGTTTCCGCCGCG--AAA-GTCAATTAATTGATCTAC-CGTTTTCAGTAT------C-------------------------AGCATCACAATGTCGCCAAACAACA---GCGCGGAAAAGCCCGTTAATCCCAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGATCTTGAACCG..............................................................................................................................................1812.00220000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---GCGCGGAAAAGCCCGT...........2111.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAA---AAGTTTTGGACTTTGAACAC-------ACT...............................................................................................................................................................................................................................................................................2811.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGACTTTGAACA..........................................................................................................................................................................................................................................................................................1711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------TGA--TGCTTTCGCTT..........................................................................................................................................................................................................................1511.00100000000001000000
droSec2
TGCATA--------------------------------------GTACGAA---------------------AA----TTATAAAAATA------------------ATAAATTCAAATATATT---------------------------------------------------------------------CG------------------------------------------------------------------AAAA----AAA-------------------------------------------------------------TAGCAGACTGAAATACTAAATGCTTA--GCCATAAAATTACTATTAAAA---------TG-TAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CG--AA----A---------------------------------------------------------------------------------------------------------------------------------------TGCAA---AAGTTTTGGACTTTGAACAC-------AC--------------------------------------TGA--TGCTTTCGCTGTCG----TTAACTG--TTATTA-AACTGAATGGGAAT-TACAATGTAACTTTTCTAATTGCTTTGATCTTGAACCGATGTTCGTTTCCGCCGCG--AAA-GTCAATTAATTGATCCAC-CGTTTTCAGCAT------C-------------------------AGCATCAAAATGTCGCCAAACAACA---GCGCGGAAAAGCCCGTTAATCCCAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---GCGCGGAAAAGCCCGT...........1912.0020020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGATCTTGAACCGA.............................................................................................................................................1811.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGAAAAGCCCGTTAATCCCAAC.2511.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---GCGCGGAAAAGCCCGT...........2011.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGTCGCCAAACAAC...............................2011.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTTGAACAC-------AC--------------------------------------TGA--TGCT.................................................................................................................................................................................................................................2511.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTCGCCAAACAACA---GCGCGG.....................2511.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---GCGCGGAAAAGCCCGT...........2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATGGGAAT-TACAATGTAA..........................................................................................................................................................................2211.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGATCTTGAACCGATGTTCGT......................................................................................................................................2511.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---GCGCGGAAAAGCCCGTTAATCCC....2711.0010010
dm3
TGCAT----------------------------------TCTTTGAA---------------------CAAAAA----TT---------TACAAAATTTACGAAATT-----------TACATTCCGGTATTT------------------------G----------------------ATAAGTGCATTTTCG------------------------------------------------------------------AACA----AAA-------------------------------------------------------------TATCAGACTAATGTGCTAAATACTTA--GCCATAAAAGTACTATTAAAAAACTATTACTA-AAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CT--------G---------------------------------------------------------------------------------------------------------------------------------------TGCAA---AAA--TTGGACTTTGAACAC-------ACTAACA--CG-----------------------------TGA--TGCTTTCGCTTTCG----ATAACTG--TTATTA-AAATGAATGGGAAT-CACAATGTAACTTTTTTAATTGCTTTGATCTTGAACGGCTGTTCATTTCCTCCACG--AAA-GTCAATTAATTGATCTAC-CGTTTTCATCAT------C-------------------------AGCATCAAAATGTCGCCAAACAACA---GCGCGGAAAAGCCAGTCAATCCCAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................T------------------------G----------------------ATAAGTGCATTTTCG------------------------------------------------------------------AACA----AAA-------------------------------------------------------------TA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGGGAAT-CACAATG.............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---GCGCGGAAAAGCCA.............1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCGCGGAAAAGCCAGTCAATCCCAAC.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................ATAAGTGCATTTTCG------------------------------------------------------------------AACA----AAA-------------------------------------------------------------TATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATCTAC-CGTTTTCATC.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTAATTGCTTTGAC.......................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGATCTTGAACGGC.............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................TCCGGTATTT------------------------G----------------------ATAAGTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---GCGCGGAAAAGCCAGTCAATCCC....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA---GCGCGGAAAAGCC..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGAAAAGCCAGTCAATCCC....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TTATTA-AAATGAATGGGAA......................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGAAAAGCCAGTCA.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTGCTTTGATCTC....................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAAATATTTAA-GCTGTGAT------------T---------TC-TAAGCTGTGCC----ACGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------CTGCAA----A---------------------------------------------------------------------------------------------------------------------------------------TGCAA---ATATTTTAGACTTTGATCAC-------CCTGAAA--AC-----------------------------GGA--GGCTTTCGCTTTCG----TTAACTG--TAATTA-AAATGAATGGAAAA-TGCGATGGAACTTTCTCAATTGCTTTGATCTTGAACCGCTGATCGCTTCCGCCGCG--AAA-CTCAATTAATTGATCTAC-CGCTTACAGCAT------C-------------------------AGCATCGAAATGTCGCCGAACAACA---GCTCGGAAAAGCCCCTCAATCCCAACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAC-CGCTTACAGCAT------C-------------------------AGCATC.................................................2511.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC-CGCTTACAGCAT------C-------------------------AGCATC.................................................2311.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAATGTCGCCGAACAACA---GCTCGGA....................2911.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAAAAGCCCCTCAATCC.....2111.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCGAACAACA---GCTCGGAAAAGC...............2811.0010100000
droYak3
AATAA----------------------------------TC---AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATCAAAAACTAAATACTTAA-GCTGTGAT------------A---------TT-TATGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAA---------------------------------CCAAAA----G---------------------------------------------------------------------------------------------------------------------------------------TGCAA---ATATTTTAGACTTTGCTCAG-------ACA----------------------------------------------TACACTTTCG----TTAACTG--TAATTA-AAATGAATGAGAAA-TGCAACGTAACTATTTTGATTGCTTTGAACTTGAACCGCTGATCATTTCCGCCGCG--AAA-GTCAATTAATTGATCTAC-CGTTTTCAGCAT------C-------------------------AGCCTCGAAATGTCGCCAAACA------GCTCGGAAAAGCCCGTCAATCCCAATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACA------GCTCGGAAAAGCCC.............2211.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA------GCTCGGAAAAGCCCGT...........2111.00100010000000
droEug1
AGAAAAA-------------------------------------TTACGGAAATAAATTGTC------CTGAAAAAATT----------------------------C-----------TCTTTCC-GGGTT---------------------------------------------------------------------------------------------------------AATATAACTA-TTATTAAATAATAATAAAAAT------------------------------------------------------------------------------------------A-GTTGTGAA------------A---------TA-GACGTTGAATT----CTGGAACTGGCATAAATATCAATATAAAAACT---------------------------------------------ACTTAA------------------------------------------------TT---GT-------CATTGAAATGAAAATGTCTTCTAAACAA---------------------------------GACAAAA----G-------------------------------------------------------------------------------------------------CGAAAA-----GAAAGTAAACCG---------CTATT---------GAGTTTTAGACTTTGATCAC-------CCAACAA--CCTGTTCAA-TATAACGTTTTTTACATAACATAG--TGCTTTCTCATTCG----TTAACTG--CAATTA-AGATGATTTAAAAA-TTCAATGAAA-TTGTTTAATTACTGTGATCTTGAACTGCTGATCGTTTCCGCTGAGA-----GTCAACTAATTGATCTCC-CGATTACAGATTCAGC------------------------------ACCAACAATGTCGCCGAATACCA---AGTCGGAAAAGCCTGTCAATCCAAACGSizeHit CountTotal NormTotal
No Reads
droBia1
TCGGTCGCAAG-----------T---------------------CTACGAATATGTATTGTCTTCTAGCTGAAA----A----------------------------TCAATTTAAAACAAGTTTCCGTCCTTAAAAAAATAATACAAATAAAATATTAAATTAATA------------------------------------------------------------------------------------------------------A-CCGCTAGTTCTTTAAAGTTTTATATCAGCGTTGCTTAACAAATAAAATAAAATAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAA------------------------------------------------AAAT-TGCATCCGTT--------GAATATATTATCTGAGCGA---------------------------------GAAAGAA----C-------------------------------------------------------------------------------------------------CGAAAA-----GAAAGAAAGTTG-----TTCCCTGTT---------ATATTTTCCAGTTTGTTCAA-------CAATACA--CCTGTTGAATTTTAAAGATTTTCACGTTATACGG--TGCTTTCTCTGCCG----TT----C--TAATTA-AGATGAATGGGTG--TATAATAAAA-ATGTTTAATTACTTTGATCTTGAACCGCTGATCGTTGCCGCCGAGA-----GTAAACTAATTGATTTCC-CGATTACAGCAT------C-------------------------TGCACCAAAATGTCGCCGAACAGCA---ACTCTGAGAAACCAGTCAATCCCAACGSizeHit CountTotal NormTotal
No Reads
droTak1
TAAAT---------------------------------------CTACGGAAATACCTTT--------------------AAATAAACA------------------AA----------------------------------------------------------------------------------------------------TGATTT------------AAAGCTGGTGGAGCAAGTGA-TTTTTAAATA-CATTAAAAAT------------------------------------------------------------------------------------------A-TAAAATAA------------T---------TA-TATGTCGCTTACAAACATGAGTTTCAGTGAATTTCAAACAGAAAATT---------------------------------------------ATTAAA------------------------------------------------AA---TTCAAC---CATTGTAATG--------ATCTGTGTAAAGAGAAGCGTATAAAAAATGTAAATCTAAATAAGACAAAG----C-------------------------------------------------------------------------------------------------GGAAAA-----GAAAGAAAGTTT-----T-------T---------ATATTTTCGTCTTTGGTCAC-------CCAT----------C-AC-TTTTAAGATTTTCACGTAATAGGC--AGCTTTCTCTGTCG----TAAACAC--TAATTA-AAACGAACGGGAAT-TGTAATGAAA-TTGTTTAACTATTTTGATCTTGAACCGCTGATCATTTCCGTCGAGA-----GTCAATTAATTGATTTCCACGATTACAGCAT------C-------------------------AGAACAAAAATGTCGCCGAACAGCA---ACTCGGAAAAGCCAATCAATCCAAACGSizeHit CountTotal NormTotal
No Reads
droEle1
TATAT----------------------------------TATCTCTA---------------------CTGAAA----T----------------------------C------------CATTTCCGAGTTT------------------------GTTTTC---------------------A---------------------------------------------------------------------------------------------------------TTGTATTTAGGGGTTTG------------------------------------------------------------------------------------------------------------------TTAATATGACTCAAAAAAGCGCTTTATATTAAAGCTTGAAACAACAGTGTGTGAAATACAATAGCATTAAA------------------------------------------------GAGT-CTCAACTGCT--------AAAAGTGGTATTTAAGTTA---------------------------------G-----------------------------------------------------------------------------------------------------------AGGAAAACTA-----------------------------AGCGAATAACATTTTGGACCTTGATCTA-------C---------CTGTT-CC-TATTGCGATTT-TACGTAATA-----TGCTTTCTATTTCG----TTAACTG--TAATTA-AAATGAA----AAA-AACGAA--------GTTAATTGCTTTGATCTTGAACCGCTGATC---TCCGCCGAGA-----GTGAATTAATTGATCTAC-CGATTACAGCAA------C-------------------------AGCAGCAGAATGTCACCGAACAACG---ACTCGGAAAAGCCACTCAATCCCAACGSizeHit CountTotal NormTotal
No Reads
droRho1
TAAACTTATCAA---------------------------TCAGTTGA---------------------CAACAA----TT---------TATAA----------------------------------------AAACAATAATAAGAACACAATATATTTTAAGGAAACGAACTCACCCATAAA---------------------------------------------------------------------------------------------------------TTGTATCAAAGGTTTTGAATGTAAAAGATGTGATAAGAAAAGGAAGAATAATTAACAACTAAATATCTAAGGCCATTAA--------------------------------------------------------------------AATT---------------------------------------------ATTAAA------------------------------------------------AGGT-TTCAAC---T--------AAAAGTGTTATCTTGATTA---------------------------------A-----------------------------------------------------------------------------------------------------------AGAAAAA-----GTAAATAAATTTGA-------ATA-TAAGCAA------ATTTGGACCTTGCTCAT-------TTAAATA--CTTGAC-AC-TATTACGATTTGTACGTAATA-----TGCATTCTATTTAG----ATAACTG--TTATTA-AGATTAATGGAAAA--TCAATTAAA-GTTTTTAATTGATTTGATCTTGAAGTGCTGATCGTTTCCGCCGATA-----GTGAATTAATTGATCAAA-CAATTACAGCAT------C-------------------------AGCGCCATAATGTCTCCGAACAACA---ACTCGGAGAAGCCATTCAATCCCAACGSizeHit CountTotal NormTotal
No Reads
droFic1
TTGCTAGACAT-----------T---------------------TTATGGATATAA---------------------TT----------------------------C-----------ACTTTCC------T------------------------C----------------------ATAAATGCAATCTGGTTTATAAAAACAAATGAACTAAATGAA---CTCAGACTTTTTAAACAAGTGA-TTT--------------------------------------------------------------------------------------------------------TCTAGTG-------------------------------------------------------------AATCGCT-----TTAATT---------------------------------------------ATTATAAAGGTTTACCTACTTTTGAGTTTAAAGACAACAACACCTACAAGTTAAAGATATTAAACCC-C--------TAATCTGTTATTTTAACCA---------------------------------A-----G-----------------------------------------------------------------------------------------------------GGGAAAACTAATGAAAGAAAGTTT-----TTGCATAATA---AA---A--AAATCGACTTTGATCAC-------TAATACACATCTGTTAAC-TATTGAGATTTTCACGTAACATAT--TGCTTTCTCTTTCG----ATAACCGACTAATTA-CAATGAATGTGAAA-TTCAATGAAA-TTGTTTAATTGCTTTGATCTTGAACCATTGATCATTTCCGCCGAGT-----GTAAATTAATTGATCTTC-CGATTGCAGCAA------C-------------------------GAATCCAGAATGTCGCCGAACAGCA---AATCGGAAAAACCAGTCAATCCCAATGSizeHit CountTotal NormTotal
No Reads
droKik1
TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-TTGTTTAATTGCTTTGATCTTGGACTGTTGATCGTTTCCGCTGTCT-----GTCAATTAATAGATTTTTCTGATTGCAG---------C-------------------------AGCCTCAGAATGTCGCCGAACAGCA---GCTCGGAAAAGCCAGTCAATCCGAACGSizeHit CountTotal NormTotal
No Reads
droAna3
TTAATGAAAAATTCAAAGCGAATATGTGAATAGAAATACTATGTGTG----------------------------------------------------------------------------------------------------------------------------------------------AG------CTTAAACAAATTAAAACTAACTGAAGAAATCA-------------ACAAAGCTTTC------CGATAA----A-AAGACAAATGTTGGAAGTC--------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------TTGTCAGAATGACACGGCAACTTCCCATTGTAGAATATAGTATCTACGCATTGAGAAAA-------------------AC-----TGTATTC------------------------TATAGTCACACCCAATGTAGACA-----------T-TTTAAGGTTTTC---CGATTTGCAATTCACTCGATTTAAACTGT----TC--TGGGTA-AAAATAAGATAAATGCGCATGGAAG-TTGTGTAATTACTCTGAACTTGAACCTCTAATCATTTCCTCATGTG-----CTCAATTAATTTCTATAT-TAGTTACAGTGC------C-------------------------AG--TGAAAATGTCGCCAAACAACAAAAGCGAAGATAAACCAGTGAACCCCAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC---CGATTTGCAATTCACT...............................................................................................................................................................................................................................2011.001010000
droBip1
AATAC----------------------------------TATTTGTG---------------------T--------------------------------------------------------------------------------------------------------------------------------CATAAAAAAATTAAAACTTAGTGGGGAAATCA-------------AGAAAGCTTTC------CGATAA----AAAAGACAAATGTTGAAACTC--------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTCAGAATGACACGGCAACTTCCCATTCAAGAATATAGTATCAACGCATTGAGAAAACGAATA-----CTAAATAAACCTACATGTTTCC------------------------TATAGTCACACCCAATGT---TA-----------C-GTTAAGGTTTTC---CAATATGCAATTTACTCGTCACACAGTGT----TC--TGGGTAGAAATTAAAGCGAAA-TGAATTGTAA-TTTTCTAATTGCTACGAACTTGAACCTCCAATCATTTC-GCCATGTGTATGCCCAATTAATTTGTATAT-TAATTTTAGTTC------C-------------------------AGT--GATTATGTCACCAAACAACAAAAGCGAAGAGAAACCTGTAAACCCCAACGSizeHit CountTotal NormTotal
No Reads
dp5
AGTGA----------------------------------TACTCTTAAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGCTATATATGTAC--TTTCGAC------------T---------GCTT-----GCGCC----ATTCC-----------------------------------TAAATGAATGAAATTATAGTAAATTATACGTAGCGTAACTGAA------------------------------------------------CGAT-AAAGCCCGT----------------------------------------------TGTAGACTTAGATAAGTCAATAGGAAACGAAACAAGTTAGACAGTGTCTGAAAGTGTAATTTGGCCTTTCACCATGACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATTT-CTATACATAGAAAA-TGCTTTAGAG-CCGTTTTATTGTTTTGATCTTGAACCCACGATCGTTTCCGAT---------CTCTAGTCTCTGATCTCT-TACTTACAG--T------C-------------------------AGTCCCAATATGTCGCCAAACAGCA---GCTCAGAGAAGCCGGTGAATCCCAATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATAGAAAA-TGCTTTAGAG-C........................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................GTAC--TTTCGAC------------T---------GCTT-----GCGCC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCTCTGATCTCT-TACTTA.............................................................................................2111.0010100000000
droPer2
TATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAC--TTGTGAC------------T---------GCTT-----GCGCC----ATACC-----------------------------------CAAATGAATGAAATTATAGTAAATTATACGTAGCGTAACTGAA------------------------------------------------CGAT-AAAGGCCGT----------------------------------------------TCTAGACTTAGATAAGTCCATAGGAAACGAAACAAGTTAGACAGTGTCTGAAAGTGTAATTTGGCCTCTCACCATGACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATTT-CTATACATAAAAAA-TGCTTTAGAG-CCGTTTTATTGTTTTGATCTTGAACCCACGATCGTTTCCGAT---------CTCTAGTCTCTGATCTCT-TACTTACAG--T------C-------------------------AGTCCCAATATGTCGCCAAACAGCA---GCTCAGAGAAGCCGGTGAATCCCAATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAA------------------------------------------------CGAT-AAAGGCCGT----------------------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---GCTCAGAGAAGCCGGTGAA........2611.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GCTCAGAGAAGCCGG............2011.001000010
droWil2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATGTCACCTAATACTA---AGTCAGAAAAGCCTCAAAATCCAAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AGGCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAGATCTTT-CAGTGCCCACTTGCATATCAGTCAGAATGCCCGATAACAGCAACAAAT--------------------------TCTGTGAATCGA-------ATGATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATCTTT-CAGTGCCCACTTG......................................................................................2312.002020000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCAGAATGCCCGATAA..............................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTCAGAATGCCCGAT................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
AGGCGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGGATC----TGTTCTCAGTTG------C-------------------------TCAGTCAGAATGCCCGATAACAGCA---ACA-AGTTCTGCGAGTCAAATCATACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACA-AGTTCTGCGAGTCAAATC.....2212.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-AGTTCTGCGAGTCAAATC.....2111.001100000
droGri2
AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCG---ATTCTAGTAAACCTGTGAATCCCAACGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:12 PM