ID:

dsi_288

 Coordinate:

3l:16574184-16574248 -

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.7 -20.7 -20.3

Flybase annnotation

utr3 [utr3_minus_5978]; intron [3l_16574184_16574248_-]; CDS [3l_16574249_16575271_-]; CDS [3l_16573996_16574183_-]

No Repeatable elements found

Sense Strand Reads

TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAGGAACACACATACAGTCCCTGTTGAATTTCAAATAATCAGGATTTTGTGTGTGGACCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTT

**************************************************...(((..((((((((.(((((.((((((...)))).....))))))).))))))))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 O002

Head

 M025

embryo

 O001

Testis

 M024

male body		 SRR618934

dsim w501 ovaries

 SRR902009

testis

 M053

female body

 GSM343915

embryo

 SRR553485

Chicharo_3 day-old ovaries

 SRR1275483

Male prepupae		 SRR553486

Makindu_3 day-old ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR902008

ovaries

 SRR553488

RT_0-2 hours eggs

 SRR1275485

Male prepupae		 SRR1275487

Male larvae
..................................................GTAAGGAACACACATACAGTCCCTG.......................................................................................... 25 0 1 321.00 321 140 37 65 13 27 6 0 10 7 0 10 0 1 0 1 3 1
...............................................................................................ATTTTGTGTGTGGACCTCAGA................................................. 21 0 1 117.00 117 73 7 5 6 14 4 1 0 0 4 0 2 0 0 1 0 0
..................................................GTAAGGAACACACATACAGTCCCT........................................................................................... 24 0 1 99.00 99 52 22 13 5 4 0 0 1 1 0 1 0 0 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCTCAG.................................................. 22 0 1 88.00 88 13 13 16 16 7 10 0 10 0 1 0 2 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCC............................................................................................. 22 0 1 78.00 78 58 7 3 2 3 0 2 1 1 0 0 0 0 0 1 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAG.................................................. 20 0 1 74.00 74 31 7 6 11 9 6 0 4 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGT................................................. 21 1 1 66.00 66 29 0 20 0 8 8 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAG................................................................................................ 19 0 1 59.00 59 0 43 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCC............................................................................................ 23 0 1 55.00 55 16 24 0 11 0 0 0 1 2 0 0 0 1 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCA................................................... 19 0 1 31.00 31 20 1 0 5 3 0 0 0 1 0 0 1 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCCTG.......................................................................................... 24 0 1 31.00 31 13 2 2 5 8 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGAC....................................................... 20 0 1 26.00 26 2 0 0 0 3 0 16 0 0 1 0 0 0 4 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGAA................................................ 22 1 1 23.00 23 12 0 2 0 3 2 1 0 1 1 0 0 0 0 1 0 0
.............................................................................................GGATTTTGTGTGTGGACC...................................................... 18 0 1 22.00 22 0 14 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCC............................................................................................ 22 0 1 19.00 19 2 9 0 5 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACC...................................................... 21 0 1 19.00 19 4 1 1 0 2 0 6 0 0 1 0 1 1 2 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCTCA................................................... 21 0 1 18.00 18 0 6 1 11 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACCT..................................................... 22 0 1 17.00 17 0 0 0 0 0 0 12 1 1 1 0 0 0 2 0 0 0
..................................................GTAATGAACACACATACAGTCCCTG.......................................................................................... 25 1 1 17.00 17 5 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGTT................................................ 22 1 1 17.00 17 4 0 4 0 2 3 0 3 0 1 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCCT........................................................................................... 23 0 1 16.00 16 5 4 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACCTCA................................................... 22 0 1 15.00 15 11 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCC........................................................................................... 24 1 1 15.00 15 10 0 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGGAACACACATACAGTCCCTG.......................................................................................... 22 0 1 14.00 14 1 10 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACA................................................................................................. 18 0 1 13.00 13 0 7 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGG................................................. 21 1 1 13.00 13 6 0 5 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTC.............................................................................................. 21 0 1 13.00 13 4 4 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCTC.................................................... 20 0 1 13.00 13 0 6 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ACACACATACAGTCCCTG.......................................................................................... 18 0 1 11.00 11 2 0 6 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTC.................................................... 18 0 1 11.00 11 8 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCT............................................................................................ 22 1 1 10.00 10 0 0 0 0 0 0 9 0 0 0 0 0 0 1 0 0 0
...................................................TAAGGAACACACATACAGTCC............................................................................................. 21 0 1 10.00 10 4 0 0 2 1 2 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGT............................................................................................... 20 0 1 10.00 10 0 8 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GATTTTGTGTGTGGACCTCAG.................................................. 21 0 1 9.00 9 4 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAG................................................................................................ 18 0 1 9.00 9 0 4 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGC................................................. 21 1 1 9.00 9 6 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGAAA............................................... 23 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AACACACATACAGTCCCTG.......................................................................................... 19 0 1 8.00 8 6 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAACACACATACAGTCCCTG.......................................................................................... 20 0 1 7.00 7 4 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAACGAACACACATACAGTCCCTG.......................................................................................... 25 1 1 7.00 7 4 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACAGTCCCTG.......................................................................................... 23 0 1 7.00 7 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACATTCCCTG.......................................................................................... 25 1 1 7.00 7 1 0 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGTA................................................ 22 2 1 6.00 6 4 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACCTC.................................................... 21 0 1 6.00 6 2 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0
.....................................................AGGAACACACATACAGTCCCT........................................................................................... 21 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACAGTCCC............................................................................................ 21 0 1 6.00 6 0 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTTTGTGTGTGGACCTCAG.................................................. 19 0 1 6.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGAT................................................ 22 0 1 5.00 5 3 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................GATTTTGTGTGTGGACCTCA................................................... 20 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACAGTCCCT........................................................................................... 22 0 1 5.00 5 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACC...................................................... 19 0 1 4.00 4 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACCT..................................................... 20 0 1 4.00 4 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCT..................................................... 19 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTAACACACATACAGTCCCTG.......................................................................................... 24 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GATTTTGTGTGTGGACCTCAGT................................................. 22 1 1 3.00 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCCC........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAATGAACACACATACAGTCCCTG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGGAACACACATACAGTCCTTG.......................................................................................... 22 1 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAAA................................................. 21 1 1 3.00 3 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCG........................................................................................... 24 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACA...................................................... 21 1 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
......................................................AGAACACACATACAGTCCCTG.......................................................................................... 21 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTTGTGTGTGGACCTCAG.................................................. 18 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCTCAGA................................................. 23 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTTTGTGTGGACCTCAG.................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCT............................................................................................ 23 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................GATTTTGTGTGTGGACCTCAGG................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTGAATTTCAAATAATCAGGAT.................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTTTGTGGACCTCAGA................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTCTGTGTGGACCTCAGTT................................................ 22 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTTGAATTTCAAATAATCAGGAT.................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGCT................................................ 22 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGCAACACACATACAGTCCCTG.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGGAACACACATACAGTCCC............................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCCTGA......................................................................................... 25 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0
.....................................................ATGAACACACATACAGTCCCTG.......................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACAGTCC............................................................................................. 20 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTTGACCT..................................................... 22 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGCA................................................ 22 2 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACCTCAG.................................................. 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTGAATTTCAAATAATCAGGATT................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCGG.......................................................................................... 25 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCTGAA........................................................................................ 27 2 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
...................................................GTATGAACACACATACAGTCCCTG.......................................................................................... 24 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGA........................................................ 16 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................GATTTTGTGTGTGGACCTCAGA................................................. 22 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TTTTGTGTGTGGACCTCAGT................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTAACACACATACAGTCCCTG.......................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTC.............................................................................................. 20 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAA.................................................. 20 1 2 1.50 3 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTTTGTGGACCTCAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATA................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCGC.......................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATCAGGATTTTGTGTGTGGTCCT..................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................TAATCAGGATTTTGTGTGTGGACCTC.................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................AGGATTTTGTGTGTGGACCTCC................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGATTTTTTGTGTGGACCTCAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACC...................................................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCAGGATCACACATACATTCCC............................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGTC................................................ 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTGAATTTCAAATAATCAGGATTTTG................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGCGTGTGGACCTCAGA................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGAC....................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAATGAACACACATACAGTCCCT........................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGATTTTGTGTTTGGACCTCAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCA............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGT............................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGATA............................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTAAGAACACACATACAGTCCCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTGAATTTCAAATAATCAGGATTTT................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGCCCCTG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AAATAATCAGGATTTTGTGTGTGGAC....................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTCAGGATCACACATACATTCCCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCTT............................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGCACACACATACAGTCCCTG.......................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCG................................................... 19 1 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTGTGTGTGGACCTCAGAAA............................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AACACACATACAGTCCCTGT......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCTCAC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGTTT............................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TAAGAACACACATACAGTCCCTGG......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AACACACATACAGTCCCGG.......................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CCCTGTTGAATTTCAAATAATCA........................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAACGAACACACATACAGTCCCT........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATCAGGATTTTGTGTGTGGAC....................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GTCCCTGTTGAATTTCAAATAATCA........................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........GTACAGAACTGGCTTACAT......................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................TTTCAAATAATCAGGATTTTGT............................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCA............................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTTTGTGTGTGGACCTCAGAA................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACATTCCCTG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AATGAACACACATACAGTCCCTG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAGGGAACACACATACAGTCCCT........................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAACACACATACAGTCCCTG.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCTTG.......................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTCTGTGTGGACCTCAGT................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTTTGTGGACC...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTTTGGACCTCAGA................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAAATAATCAGGATTTTGTGTGTGGAC....................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................TTTGTGTGTGGACCTCAGA................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAATACACATACAGTCCCTG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACGGTCCCTG.......................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTGAATTTCAAATAATCAGGATTTTGT............................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................GGATTTTGTGTGTGGACCTCAGG................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACCTCG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACA................................................................................................. 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATCCAGTCCCT........................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACCTA.................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................TAGAACACACATACAGTCCCTG.......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AACGAACACACATACAGTCCCTG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TCAAATAATCAGGATTTTGTGTGTGGAC....................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTAAGGAACACACATACAGCCCCT........................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATAATCAGGATTTTGTGTGTAGAC....................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................TAATCAGGATTTTGTGTGTGGACCTCA................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................CAGGATTTTGTGTGTGGACC...................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGA........................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................ATTTTGTGTGCGGACCTCAGTT................................................ 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCCG.......................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGAAAA.............................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGAACACACATACAGTCCTTG.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TAATCAGGATTTTGTGTGTGTACCTC.................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................ATCAGGATTTTGTGTGTGGACCTC.................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCCCAGT................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTTTGTGGACCT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGCC................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CACATACAGTCCCTGTTGA...................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACCTT.................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACCTCAG.................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACAGTGCT............................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACTTACAGTCCCT........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCTGT......................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AAGGAACACACATACAGT............................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCAGGATTTTGTGTGTGGACCTC.................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TTAAGGAACACACATACAGTCCCTG.......................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................TTTTGTGTGTGGACCTCAGA................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGGAACACACATACAGTCCCTGT......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGGAACACACATACAGTCC............................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACTTCA................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................GATTTTGTGTGTGGACCTC.................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGGCC............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGAACACACATACAGTCCCTG.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCTGA......................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCTT........................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................AGGAACACACATACAGTCTTTG.......................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACAGTCCCTGTAGA...................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................CTTTCCGCAGGTACGGACCA......................................................................................................... 20 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ATCAGGATTTTGTGTGTGGACC...................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCTT.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCCCAGCT................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACACACAGTCCCTG.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAACACACATACAGTCCCTGTTG....................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAATGAACACACATACAGTCCCGG.......................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGATC............................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TAATCAGGATTTTGTTTGTGGACCTCAG.................................................. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTGAATTTCAAATAATCAGGATTT.................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTTTGTGTGTGGACCTCA................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGATTTTGTGTGTGGACCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTACGGAACACACATACAGTCCCTG.......................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AAGGAACTCACATACAGTCCCTG.......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGAGCACACATACACTCCCTG.......................................................................................... 25 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAGGA................................................ 22 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACCTCAAAA................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTTGACCTCAGT................................................. 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCAGGATCACACATACATTCC............................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGACTCCAGTT................................................ 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGAACACACATACATCCCT............................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ACACACATACAGGCCCTG.......................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTTTGTTTGTGGACCTC.................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ATTTTTGTGTGGACCTCAGA................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AATTTTGTGTGTGGAACTAAG.................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................ATTTTGTGTGTGGAACTAAGC................................................. 21 3 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
........................................................................................................GTCGACCTCAGATCATGTGA......................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................GCAGGTACGGACCACAC...................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGGACCTCAGAGAATGT........................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................TTGACCTCAGATCAGGT........................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................TTGACCTCAGATCAGG............................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

ACTCTCGGTCATGTCTTGACCGAATGTAGTTGGTGTTCTTGAAAGACGTCCATTCCTTGTGTGTATGTCAGGGACAACTTAAAGTTTATTAGTCCTAAAACACACACCTGGAGTCTAGTACAAGGTCCGGACCGTCCTATGCGTTGTCACCAAGTCGCTAGAGAA

**************************************************...(((..((((((((.(((((.((((((...)))).....))))))).))))))))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934

dsim w501 ovaries

 M023

head

 SRR553485

Chicharo_3 day-old ovaries

 SRR553488

RT_0-2 hours eggs
..................................................................................................................................ACCGTCCTATGAGTTGT.................. 17 1 1 1.00 1 1 0 0 0
............GTCTTGACCGAATGTAG........................................................................................................................................ 17 0 1 1.00 1 1 0 0 0
..................................................................................................................................................TCACCAAGTCGCTAGAGT. 18 1 2 0.50 1 1 0 0 0
..................................................................................................................................................TCACCAAGTCGCCAGA... 16 1 3 0.33 1 1 0 0 0
................................................................ATGTCAGTGGCTACTTAAAG................................................................................. 20 3 7 0.14 1 0 1 0 0
.........................................AAAGACGTCCCTTGCTTGT......................................................................................................... 19 2 8 0.13 1 1 0 0 0
.....................................................................................................................................GTCCTATGAGTTGTC................. 15 1 8 0.13 1 1 0 0 0
..................................................................................................................................ACCGGCCTATGAGTTGT.................. 17 2 10 0.10 1 1 0 0 0
.......................ATAAAGTTGGTGTTCTTG............................................................................................................................ 18 2 10 0.10 1 0 0 1 0
............................................GACGTCCATTCCAAGTG........................................................................................................ 17 2 11 0.09 1 0 0 0 1
....................CGTATATAGTTGGTGTTCTA............................................................................................................................. 20 3 13 0.08 1 1 0 0 0
.................................................................................................................................................GTCACCAAGTCGCCA..... 15 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 3l:16574134-16574298 - dsi_288 confident TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATAC--A--------GTCCCT-------------GTTG-A-ATTTCAAATAATCAGGATTTTG------TGTGTGGA--CCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTT
droSec2 scaffold_0:9052522-9052686 - dse_355 confident TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATAC--A--------ATCCCT-------------GTTG-A-ATATTAAATAATCAGGATTTTG------TGTGTGGA--CCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTT
dm3 chr3L:16991508-16991674 - dme-mir-2500 Known_mirbase TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATATACA--------ATACCG-------------TTTG-A-ATTTCAAATAATCAGGATTTTG------TGTGTGGA--CCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTT
droEre2 scaffold_4784:16851423-16851587 + der_239 confident TGAGAGCCAGTACAGAGCTGGCTTACATCAACCACAAGAATTTTCTGCAGGTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------GTCG-C-ATTTTATGTAATCAGGATTTTG------CGTGTGAA--CTTTAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTT
droYak3 3L:17082605-17082769 + dya_161 confident TGAGAGCCAGTACAGAGCTGGCTTACATCAACCACAAGAACTTTCTACAGGTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GTAG-A-ATTTAATTTAATCAGGAATTTA------TGTGTGAA--CTTTAGATCATGTTCCAGGCCTGGCAGGATACCCAACAATGGTTCAGCGATCTCTT
droEug1 scf7180000409711:344182-344345 + TGAGAGCGAGCACGGAGCATGCGTACATCAATCATAAGAACTTCCTTCAGGTAAG------------GAT------CACACATAC--T--------ATCCC--------------GTTA-T-TTAGGAAATAATCAGGATGTTC------TGTGTGAC--CCTCAGATCATGTTCCAAGCTTGCCAGGATACGCAACAGTGGTTCAGTGATCTTTT
droBia1 scf7180000302428:3118478-3118639 + TGCGGGCCAGTACGGAGAATGCGTACATCAATCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATAC--A--------ACTCCT-------------GTCG-----CCAAAGTAATCAGGAATTTT------TGTGTGTC--CCTCAGATCATGTTCCAGGCCTGGCAGGATACACAACAGTGGTTCAGCGATCTCTT
droTak1 scf7180000415352:367361-367525 + TGAGGGCCAGCACAGAGCATGCGTACATCAATCACAAGAACTTTCTGCAGGTAAG------------GAT------CACACAGACACA--------AT-CCT-------------GTAA---AATGTAAATAACCAGGATTTTT------TGTGCGAT--CCTCAGATCATGTTTCAGGCCTGGCAGGATACGCAGCAGTGGTTCAGCGATCTCTT
droEle1 scf7180000491255:3429549-3429723 - TGAGAGCCAGCACGGAGCACGCTTACATCAACCATAAGAATTTTCTGCAGGTTAG------------AAT------AACAGATATATATATATGCA--TATG-------------ATTG-T-GTCTCTATTAATCAGTGGTTTT------TGTTTAAATCCCCCAGATCATGTTCCAGGCCTGGCAGGATGCGCAGCAATGGTTTAGCGATCTCTT
droRho1 scf7180000779902:73487-73652 + TAAGAGCCAGCACGGAACACGCGTACATCAATCACAAGAACTTTCTGCAGGTAAA------------GAT------CCCACTAAC--A--------TATTCG-------------GTTT-T-CTCTTAAATAAACAGAATTATT------TGTTCGAT-CAACCAGATCATGTTCCAGGCCTGGCAGGATACGCAGCAATGGTTCAGCGATCTCTT
droFic1 scf7180000454113:3613659-3613826 + TGAGAGCCAGCACAGAGCATGCTTATATAAACCACAAGAACTTTCTGCAGGTAAG------------GAT------CGCACT-----------------CCATTAA---CATTTAGTTT---CTCTGGATTAATCTGGATTTCC------TGTTTGGA-TCTTTAGATCATGTTCCAGGCCTGGCAGGATACTCAGCAGTGGTTCAGCGATCTCTT
droKik1 scf7180000302486:836744-836843 - TGAGGGCCAGCACAGAGCATGCGTACATCAATCACAAGAACTTCCTGC--------------------------------------------------------------------------------------------------------------------AAATCATGTTCCAGGCGTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTT
droAna3 scaffold_13337:13625740-13625900 + TGAGGGCCAGCACGGAACATGCCTACATAAATCACAAAAACTTTCTGCAGGTGAG------------CAG------TTCAAGCTT-------------------AGCGAGGTCTGTTCC-AGTTTCCTAACATTC--------T----TCCGC-----TCCTTTAGATCATGTTCCAGGCCTGGCAGGACACACAGCAGTGGTTCAGCGACCTGTT
droBip1 scf7180000395832:570013-570175 + TAAGGGCCAGTACGGAACATGCCTACATAAATCACAAGAACTTCTTGCAAGTGAG------------GAT------TAGGGTCTTAGG--------ATTTAA----------------G-C-ATT-CCACTGACCACCATTTTC------CCCGCTTA--TTCCAGATCATGTTCCAGGCCTGGCAGGACACACAGCAGTGGTTCAGCGATCTCTT
dp5 XR_group8:4827132-4827265 - --------------------------------CACAAGAACTTTTTGCAGGTAAGCC-----------AT------CAC--CAGCATTGAAAGCCA--------------------TTG-A-AATGCGTCTAAATAGCAGTCTC------TCTCC---TCCCACAGATCATGTTCCAGGCCTGGCAGGATACACAGCAGTGGTTCAACGATCTCTT
droWil2 scf2_1100000004768:197052-197217 - TGAGAGCTAGCACAGAGCATGCCTATATCAATCATAAAAACTTTTTACAGGTAAGCCACAAC-----GAT------GAA--T-GGCTCGAGGGAGA--------------------TTG-A-ACTCTATGTAATC----TCTTC--------ACTT--TCTTGCAGATAATGTTTCAGGCTTGGCAGGATACACAACAATGGTTTAACGATCTCTT
droVir3 scaffold_13049:10166487-10166650 + TGCGGGCCAGCACGGAGCACGCTTACATCAATCACAAGAACTTTCTGCAGGTGCGTTCCCCCTGGCTGAT------CACATATGT--C--------GT--------------------T-T-ATACTAT---------ATTTTCGCCTTTTGC-----TCCTGCAGATCATGTTCCAGGCCTGGCAGGATGCGCAGCGTTGGTTCAGCGATCTGTT
droMoj3 scaffold_6680:10629158-10629315 - TGAGGGCAAGCACGGAGCACGCATACATCAATTACAAGAACTTTCTCCAGGTGAGTTACG-------GTT------CAC----AT--A--------ATTCTC----------------G-T-ATTCCAAATAACGAAA--TCTT------TGT-----CCTTGCAGATCATGTTCCAGGCCTGGCAGGATGCGCAGCAATGGTTCAGCGATCTGTT
droGri2 scaffold_15110:9071700-9071866 - TGAGGGCCAGCACGGAGCACGCCTACATCAATCCCAAGAACTTGCTGCAGGTGAG------------A-TTTTGATCGA----TT-------------------AATTAAGCCTGGCTCCCTTTGCTAAATATGCC--ACTTTT------TGTGT-----TGGCAGATCATGTTCCAGGCCTGGCGGGATACGCAGCAATGGTTCAGCGATCTGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATAC--A--------GTCCCT-------------GTTG-A-ATTTCAAATAATCAGGATTTTG------TGTGTGGA--CCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------G....................................................................................................251321.003211402765101337001167001310
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGA.................................................211117.001177314506742014001000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------.....................................................................................................24199.009952413152200000100001
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAG..................................................22188.008813716101613120010000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCC....................................................................................................................22178.0078583312700010102000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAG..................................................20174.00743196411700006000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGT.................................................21166.00662982000000008100000
..................................................GTAAG------------GAA------CACACATAC--A--------G.......................................................................................................................19159.00590000164300000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCC...................................................................................................................23155.005516001112400100200000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCA...................................................19131.0031203005101000100000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCCT-------------G....................................................................................................24131.0031138205201000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--C.......................................................20126.0026230000100000416000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAA................................................22123.0023123200010012101000
........................................................................................................................................GGATTTTG------TGTGTGGA--CC......................................................18122.0022000081400000000000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCC...................................................................................................................22119.001920005900003000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CC......................................................21119.001942100111100026000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCA...................................................21118.0018001011600000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCT.....................................................22117.0017000100100001212000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCCT-------------.....................................................................................................23116.001651006400000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCA...................................................22115.0015112000000001100000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCC-------------.....................................................................................................24115.0015101400000000000000
.....................................................AG------------GAA------CACACATAC--A--------GTCCCT-------------G....................................................................................................22114.0014100121000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------........................................................................................................................18113.001300105700000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGG.................................................21113.001362500000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTC.....................................................................................................................21113.001340001400101100001
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTC....................................................20113.001300007600000000000
.....................................................................A------CACACATAC--A--------GTCCCT-------------G....................................................................................................18111.001123600000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTC....................................................18111.001181000200000000000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCT...................................................................................................................22110.001000000000000019000
...................................................TAAG------------GAA------CACACATAC--A--------GTCC....................................................................................................................21110.001041002000002001000
..................................................GTAAG------------GAA------CACACATAC--A--------GT......................................................................................................................20110.001000002800000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAG..................................................2119.00940010200001001000
...................................................TAAG------------GAA------CACACATAC--A--------G.......................................................................................................................1819.00900005400000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGC.................................................2119.00960300000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAAA...............................................2318.00880000000000000000
....................................................................AA------CACACATAC--A--------GTCCCT-------------G....................................................................................................1918.00860200000000000000
...................................................................GAA------CACACATAC--A--------GTCCCT-------------G....................................................................................................2017.00741200000000000000
....................................................AAG------------GAA------CACACATAC--A--------GTCCCT-------------G....................................................................................................2317.00732000100001000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGTA................................................2216.00641100000000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTC....................................................2116.00622000000200000000
.....................................................AG------------GAA------CACACATAC--A--------GTCCCT-------------.....................................................................................................2116.00600000600000000000
....................................................AAG------------GAA------CACACATAC--A--------GTCCC...................................................................................................................2116.00600001500000000000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAG..................................................1916.00650100000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAT................................................2215.00530001010000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCA...................................................2015.00540100000000000000
....................................................AAG------------GAA------CACACATAC--A--------GTCCCT-------------.....................................................................................................2215.00500011300000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CC......................................................1914.00421000100000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCT.....................................................2014.00400000102001000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCT.....................................................1914.00400004000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGT.................................................2213.00310100000001000000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCCC-------------.....................................................................................................2313.00330000000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCG-------------.....................................................................................................2413.00321000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CA......................................................2113.00300000000000003000
............................................................................................................................................TTTG------TGTGTGGA--CCTCAG..................................................1813.00300001200000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGA.................................................2312.00210001000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCT...................................................................................................................2312.00200000000000002000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGG.................................................2212.00200200000000000000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGAT............................................................................2212.00220000000000000000
...................................................................................................................GTTG-A-ATTTCAAATAATCAGGAT............................................................................2312.00220000000000000000
.....................................................AG------------GAA------CACACATAC--A--------GTCCC...................................................................................................................2012.00200000200000000000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCCT-------------GA...................................................................................................2512.00200010000100000000
....................................................AAG------------GAA------CACACATAC--A--------GTCC....................................................................................................................2012.00200000100001000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGCA................................................2212.00211000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTCAG..................................................2512.00211000000000000000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGATT...........................................................................2312.00220000000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------GAA..................................................................................................2712.00200000020000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--........................................................1612.00200000010001000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGA.................................................2212.00201010000000000000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAGT.................................................2012.00220000000000000000
...................................................TAAG------------GAA------CACACATAC--A--------GTC.....................................................................................................................2012.00200001000001000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAA..................................................2021.50300000000002001000
..................................................GTAAG------------GAA------CACACATA....................................................................................................................................1611.00100000000001000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCG-------------C....................................................................................................2511.00100100000000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--CCTC....................................................2611.00100000000010000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCC...................................................2211.00101000000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CC......................................................1611.00100000000001000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGTC................................................2211.00101000000000000000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGATTTTG------..................................................................2611.00101000000000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--C.......................................................1811.00101000000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCA....................................................................................................................2211.00110000000000000000
...................................................TAAG------------GAA------CACACATAC--A--------GT......................................................................................................................1911.00100001000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGATA...............................................2311.00110000000000000000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGATTTT.........................................................................2511.00110000000000000000
...............................................................................................................................AAATAATCAGGATTTTG------TGTGTGGA--C.......................................................2611.00100000010000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCTT...................................................................................................................2311.00100000000000001000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCG...................................................1921.00211000000000000000
.............................................................................................................................................TTG------TGTGTGGA--CCTCAGAAA...............................................2011.00100000000001000000
....................................................................AA------CACACATAC--A--------GTCCCT-------------GT...................................................................................................2011.00110000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAC..................................................2211.00110000000000000000
..................................................................................................CCCT-------------GTTG-A-ATTTCAAATAATCA................................................................................2311.00110000000000000000
...................................................................................................................................AATCAGGATTTTG------TGTGTGGA--C.......................................................2211.00101000000000000000
................................................................................................GTCCCT-------------GTTG-A-ATTTCAAATAATCA................................................................................2511.00100010000000000000
.........GTACAGAACTGGCTTACAT............................................................................................................................................................................................1911.00100000000000100000
...........................................................................................................................TTTCAAATAATCAGGATTTTG------T.................................................................2211.00110000000000000000
...................................................TAAG------------GAA------CACACATAC--A--------GTCCA...................................................................................................................2211.00100000000001000000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAGAA................................................2111.00100010000000000000
..............................................................................................................................CAAATAATCAGGATTTTG------TGTGTGGA--C.......................................................2711.00100010000000000000
............................................................................................................................................TTTG------TGTGTGGA--CCTCAGA.................................................1911.00100000100000000000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGATTTTG------T.................................................................2711.00100000000100000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGG.................................................2311.00110000000000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCG...................................................2211.00110000000000000000
...................................................TAAG------------GAA------CACACATAC--A--------........................................................................................................................1711.00100000000001000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTA....................................................2311.00100000000100000000
.............................................................................................................................TCAAATAATCAGGATTTTG------TGTGTGGA--C.......................................................2811.00100000001000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--CCTCA...................................................2711.00100000000010000000
......................................................................................................................................CAGGATTTTG------TGTGTGGA--CC......................................................2011.00110000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--........................................................1911.00100000000010000000
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--CCTC....................................................2411.00110000000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGCC................................................2211.00110000000000000000
..............................................................................CACATAC--A--------GTCCCT-------------GTTG-A-..............................................................................................1911.00100010000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTT....................................................2311.00100000010000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCAG..................................................2311.00100000000000001000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------GT...................................................................................................2611.00100010000000000000
....................................................AAG------------GAA------CACACATAC--A--------GT......................................................................................................................1811.00101000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTC....................................................2311.00100000000000001000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAGA.................................................2011.00100000000001000000
.....................................................AG------------GAA------CACACATAC--A--------GTCCCT-------------GT...................................................................................................2311.00110000000000000000
.....................................................AG------------GAA------CACACATAC--A--------GTCC....................................................................................................................1911.00100000100000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTC....................................................1911.00110000000000000000
......................................................G------------GAA------CACACATAC--A--------GTCCCT-------------G....................................................................................................2111.00100100000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------GA...................................................................................................2611.00100010000000000000
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--CC......................................................2211.00101000000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------T....................................................................................................2511.00110000000000000000
..................................................GTAAG------------GAA------CACACATAC--A--------GTCCCT-------------GTTG-................................................................................................2811.00100010000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGATC...............................................2311.00100000100000000000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGATTT..........................................................................2411.00110000000000000000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCA...................................................1811.00100000000001000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCT...................................................2211.00110000000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGGA................................................2220.50100000000001000000
droSec2
TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATAC--A--------ATCCCT-------------GTTG-A-ATATTAAATAATCAGGATTTTG------TGTGTGGA--CCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------G....................................................................................................2511050.001050920147244
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAG..................................................221749.00749663283721
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGT.................................................211218.0021864315370
...................................................TAAG------------GAA------CACACATAC--A--------ATCCCT-------------G....................................................................................................241181.00181177013
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGA.................................................211138.0013840192257
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------.....................................................................................................241107.00107831716
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAG..................................................201100.001006571018
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAG..................................................21174.007474000
..................................................GTAAG------------GAA------CACACATAC--A--------ATCC....................................................................................................................22159.0059275423
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGA.................................................23150.005041513
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCC...................................................................................................................23150.005041324
...................................................TAAG------------GAA------CACACATAC--A--------ATCCCT-------------.....................................................................................................23137.003737000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAA................................................22134.003425621
...................................................TAAG------------GAA------CACACATAC--A--------ATCCC...................................................................................................................22130.003024303
....................................................AAG------------GAA------CACACATAC--A--------ATCCCT-------------G....................................................................................................23126.002626000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCA...................................................21123.002317231
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGT.................................................22123.002372113
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGC.................................................21119.00194267
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGT.................................................23119.001910531
..................................................GTAAG------------GAA------CACACATAC--A--------ATC.....................................................................................................................21117.00179107
...................................................TAAG------------GAA------CACACATAC--A--------ATCC....................................................................................................................21115.001510104
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGA.................................................22115.00158241
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCA...................................................19114.00146026
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------GT...................................................................................................26112.00123234
..................................................GTAAG------------GAA------CACACATAC--A--------A.......................................................................................................................1919.0098010
..................................................GTAAG------------GAA------CACACATAC--A--------AT......................................................................................................................2018.0086002
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAG..................................................1918.0087010
...................................................TAAG------------GAA------CACACATAC--A--------ATCCCT-------------GT...................................................................................................2518.0087100
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCA...................................................2018.0082303
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAAA...............................................2317.0072203
...................................................TAAG------------GAA------CACACATAC--A--------ATC.....................................................................................................................2016.0064101
....................................................AAG------------GAA------CACACATAC--A--------ATCCCT-------------.....................................................................................................2216.0066000
..................................................GTAAG------------GAA------CACACATAC--A--------........................................................................................................................1816.0060042
............................................................................................................................................TTTG------TGTGTGGA--CCTCAG..................................................1816.0066000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAGT.................................................2016.0065010
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CC......................................................2115.0050500
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--C.......................................................2015.0050203
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCA...................................................2215.0051103
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAT................................................2214.0040004
...................................................TAAG------------GAA------CACACATAC--A--------AT......................................................................................................................1914.0041003
....................................................AAG------------GAA------CACACATAC--A--------ATCC....................................................................................................................2014.0043001
.....................................................AG------------GAA------CACACATAC--A--------ATCCCT-------------G....................................................................................................2214.0044000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCT.....................................................1914.0042011
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGC.................................................2314.0041111
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCT.....................................................2214.0040031
.....................................................AG------------GAA------CACACATAC--A--------ATCCCT-------------GT...................................................................................................2313.0031101
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGTA................................................2213.0033000
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------GA...................................................................................................2613.0033000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTC....................................................2113.0031101
........................................................................................................................................GGATTTTG------TGTGTGGA--CC......................................................1813.0030012
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTT....................................................1913.0032001
.........................................................................................................................................GATTTTG------TGTGTGGA--CCT.....................................................1812.0020011
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCATT...................................................2412.0020200
......................................................G------------GAA------CACACATAC--A--------ATCCCT-------------G....................................................................................................2112.0022000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTC....................................................2012.0022000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTC....................................................1812.0020020
...................................................................GAA------CACACATAC--A--------ATCCCT-------------G....................................................................................................2012.0022000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGC.................................................2212.0021001
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAT..................................................2112.0022000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--........................................................1912.0020011
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGCA................................................2212.0021001
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAGA.................................................2012.0022000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCA...................................................1812.0022000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCT...................................................2011.0011000
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCTG-------------.....................................................................................................2411.0010010
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCATT.................................................2111.0011000
..............GAACTGGCTTACATCAACCA......................................................................................................................................................................................2011.0010010
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--CC......................................................2211.0010010
..................................................................................................................................................................................................AACAGTGGTTCAGCGATCTCT.2111.0010001
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCT...................................................2211.0010010
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------A....................................................................................................2511.0011000
.............................................................................................................................................TTG------TGTGTGGA--CCTCAGT.................................................1811.0011000
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------GGG..................................................................................................2711.0011000
.................................................................................................................................ATAATCAGGATTTTG------TGTGTGGA--CCT.....................................................2611.0010010
....................................................AAG------------GAA------CACACATAC--A--------ATCCCT-------------GA...................................................................................................2411.0011000
...................................................................................................................................AATCAGGATTTTG------TGTGTGGA--C.......................................................2211.0010100
.....................................................................................................T-------------GTTG-A-ATATTAAATAATCAGG..............................................................................2211.0010001
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGAA................................................2311.0010010
...................................................TAAG------------GAA------CACACATAC--A--------ATCCCT-------------GG...................................................................................................2511.0011000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAT..................................................2211.0011000
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------GG...................................................................................................2611.0011000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCAG..................................................2311.0010001
............................................................................................................................................TTTG------TGTGTGGA--CCTCAGT.................................................1911.0010001
...................................................................................................................................AATCAGGATTTTG------TGTGTGGA--CCTCA...................................................2611.0010010
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCT...................................................................................................................2311.0010001
.....................................................AG------------GAA------CACACATAC--A--------ATCCC...................................................................................................................2011.0011000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGATTT..............................................2411.0011000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--C.......................................................2311.0010010
..................................................GTAAG------------GAA------CACACATAC--A--------ATCCCT-------------T....................................................................................................2511.0011000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGG.................................................2111.0010010
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAAAT..............................................2411.0010010
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGTAT...............................................2311.0011000
..................................................GTAAG------------GAA------CACACATAC--A--------ATCA....................................................................................................................2211.0010001
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCT...................................................2111.0010010
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAA..................................................2111.0011000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTC....................................................1911.0010100
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCT.....................................................2011.0010001
...................................................................GAA------CACACATAC--A--------ATCCCT-------------GT...................................................................................................2111.0010001
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGAAT...............................................2311.0010001
dm3
TGAGAGCCAGTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATATACA--------ATACCG-------------TTTG-A-ATTTCAAATAATCAGGATTTTG------TGTGTGGA--CCTCAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................TAAG------------GAA------CACACATATACA--------ATACCT-------------.....................................................................................................251280.00280000000000000010000000000000000000000000000000000000000000000000000000000000081029000020200010010100013202031005011016000000001010120000000000010000000020000010003000000101000003010000100001010000300000000000000003140000114271051028003200000000012000000400000700000003010110100014002000410000000000000000001001504100000000100000117840
...................................................TAAG------------GAA------CACACATATACA--------ATACC...................................................................................................................241175.001750000000000001000000000000000000000000000000000000000000000000000000000000000422200000011000010011000000010150001000000000000000001000000000000000000013000001100200100000000010001020000800100000000100000000000000363000010130115150012000000000110000102000004000021010100100000000011701000200000000000000020005042000000000000000414540
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGT.................................................221106.00106000000000000000000000000001000000000000000000000000000000000000000000000000001000400300100010110000110000000201300200000000000000000000000000000000200000000300000000010000000001000000100003100000000000000000000200031010110024000000000000002310000500000100101005100000000100003020100000000000000000001001411601101000010301023020
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAG..................................................22198.0098000000000000000000000000000000000000000000000000000000000000000000000000000000001165282100102200301007211010000101200000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000100000000001000000010000000001010000000000000000000000000000000200000000000000000
...................................................TAAG------------GAA------CACACATATACA--------ATACCT-------------G....................................................................................................26178.0078000000000000000000000000000000000000000000000000000000000000000000000000000013310000001000000110000007010200000000000000000000001000000000000000000100000000000000000000000010100000000000000000000000000000000000000020011563025400500000000011010001300000111000000001100000000000000000000000000000000000000010000000000001000001310
...................................................TAAG------------GAA------CACACATATACA--------AT......................................................................................................................21169.0069000000000000000000000000005000000000000000000000000000000000000000000000000042110000001000000000000020000000000000000000000000100000000000000000000000000000000000000100000000001000020000100000000000000000000000300000000000000200200000000010000000200000500000001021000000000001210301020000010000000000000600100100000100000024110
..................................................GTAAG------------GAA------CACACATATACA--------ATACC...................................................................................................................25152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000030000000000020000000000000000101001000000000000000000100000100000000000000000021100030000000000000000000000000000000000001020831100010100000000010000000000000000100000000000010000000000000010000000001000000000103000020000100000002100
...................................................TAAG------------GAA------CACACATATACA--------ATAC....................................................................................................................23142.0042000000000000000000000000000000000000000000000000000000000000000000000000000011030000000000000000000000000000000000000000000000000000000000000000000001000010000008060020000000000000000200000000000000000000000000000000000000000100400000000000000000100000100001100000000000000000010000000000100000000000000110000000000000000011200
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCA...................................................20140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100002010030000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000100100100000002000000000000003020010000000000000000002000301200000000001000016010
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAG..................................................21130.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001010002100001000100000000001000000000000000110005050000000000000000000000000000000000000000102100000000000000001000
..................................................GTAAG------------GAA------CACACATATACA--------AT......................................................................................................................22127.0027000000000000000000000000000000000000000000000000000000000000000000000000000013120000000100000002000000100000000000000000000000000000000000000000000000000000000000000000000010101105000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000110000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGA.................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100004000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010100000000001000000000000010000100000000000000000003002030000000000000000000011000001200000000000000011000
....................................................AAG------------GAA------CACACATATACA--------ATACCT-------------.....................................................................................................24123.0023000000000000000000000000000000000000000000000000000000000000000000000000000002220000000100000010000000000000000000000000000000000000000000000000100000000000000000000100000000100000000000000000000000000000000000000000000110100200300000000010000000000000000000101000000000000000000000000000000000000000000100000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATACCT-------------.....................................................................................................26123.0023000010000000000000000000000000000000000000000000000000000000000000000000000021020001000000000010100000000000000000000000000100001000000000000000000003000000000000000000000000200010000000000000000000000000000000000000000010000100100000000001000000000000000000000000000010001000000000000000000000000000000000000000000000000000000
...................................................TAAG------------GAA------CACACATATACA--------ATA.....................................................................................................................22122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000200001000000000100000000000000000000000001000000000000000000000000001000005000000000000000000000000000000000000000011000000000000000000000000000100000001000000000000002000000000000010000000000000100000000000000000001100
..................................................GTAAG------------GAA------CACACATATACA--------ATACCT-------------G....................................................................................................27119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010120001200100000000000000000000000000000002001000000000001000000000000000000000000000100100000000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGATC...............................................25112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000057000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------........................................................................................................................20111.0011000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000200000000000000000000000000000000100000000000
....................................................AAG------------GAA------CACACATATACA--------ATACCT-------------G....................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000020000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000100000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCA...................................................2119.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................AAG------------GAA------CACACATATACA--------ATACC...................................................................................................................2319.009000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATAC....................................................................................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100001000000000000000000002000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAG------------GAA------CACACATATACA--------A.......................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000010010010000000000000000000000000000000000000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--........................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000003200100000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGT.................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000200001000000100000000000002100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGAATC..............................................2518.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTC....................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000100000000000000000000000000000000001000000100000001000000001000
...................................................TAAG------------GAA------CACACATATACA--------........................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000004000
............................................................................................................................TTCAAATAATCAGGATTTTG------TGTGT.............................................................2517.007000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000001111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TCAAATAATCAGGATTTTG------TGTGTGG...........................................................2617.007000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--C.......................................................2315.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000
..................................................GTAAG------------GAA------CACACATATACA--------A.......................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000
............................................................................................................................TTCAAATAATCAGGATTTTG------TGTGTGG...........................................................2715.005000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000
..................................................GTAAG------------GAA------CACACATATAC.................................................................................................................................1915.005000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTCAAATAATCAGGATTTTG------TGTGTG............................................................2615.005000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................TTTCAAATAATCAGGATTTTG------TGTGT.............................................................2614.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGATC...............................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTTTG------TGTGTGGA--CCTCAG..................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGA.................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTTCAAATAATCAGGATTTTG------TGTGTG............................................................2714.004000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAG..................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................TG-A-ATTTCAAATAATCAGGATTTTG------TG................................................................2713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--CCTCA...................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000001000
................................................................................................................................AATAATCAGGATTTTG------TGTGTGGA--C.......................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAATC................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AATCAGGATTTTG------TGTGTGGA--CCTCAG..................................................2713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTCAAATAATCAGGATTTTG------TGTG..............................................................2413.003000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTTCAAATAATCAGGATTTTG------TGTG..............................................................2513.003000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...................................AAGAACTTTCTGCAGGTAAG------------G....................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TCAAATAATCAGGATTTTG------TGTGTGGA--C.......................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ATGTTCCAGGCCTGGCAGGATAC........................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AATCAGGATTTTG------TGTGTGGA--C.......................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
....................................................................................................................TTG-A-ATTTCAAATAATCAGGATTTT.........................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AATAATCAGGATTTTG------TGTGTGG...........................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000
...................................................TAAG------------GAA------CACACATATACA--------ATACCG-------------.....................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGAT................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGG...........................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTC....................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................TAAG------------GAA------CACACATATACA--------ATACCT-------------A....................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTC....................................................2012.002000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--C.......................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000
.....................................................................................................................TG-A-ATTTCAAATAATCAGGATTTTG------TGT...............................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CC......................................................2112.002000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................CAAATAATCAGGATTTTG------TGTGTGGA--C.......................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
........................................................................................................................................................................CATGTTCCAGGCCTGGCAGGATA.........................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTCAG..................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--CCTCA...................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATAA....................................................................................................................2412.002000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTACATCAACCACAAGAACTTTCTGCAGA.....................................................................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTACATCAACCACAAGAACTTTCTGC........................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCCC..................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--CC......................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................................................CCAGGCCTGGCAGGATACGCAACAGTGGT.............2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ATCAGGATTTTG------TGTGTGGA--CCTA....................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................TGGCTTACATCAACCACA....................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AATAATCAGGATTTTG------TGTGTG............................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAATC................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ATAATCAGGATTTTG------TGTGTGGA--CCTC....................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTTACATCAACCACAAGAACTTT............................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................TAAG------------GAA------CACACATATACA--------ATACCG-------------G....................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--CCT.....................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--CCTC....................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATACCG-------------.....................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AAATAATCAGGATTTTG------TGTG..............................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................AAATAATCAGGATTTTG------TGTGTGG...........................................................2411.001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AGGATTTTG------TGTGTGGA--C.......................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................ACAGTGGTTCAGCGATCTCT.2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCA...................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTT....................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--CCTCA...................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
TGAGAGCCAGTACAGAACTGG...................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTCAAATAATCAGGATTTTG------TGTGG.............................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATACCA-------------.....................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................................AATAATCAGGATTTTG------TGTG..............................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................CAAATAATCAGGATTTTG------TGTGTGG...........................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................GATTTTG------TGTGTGGA--CCTCAGAAT...............................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TCAGGATTTTG------TGTGTGGA--C.......................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAT..................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATTTTG------TGTGTGGA--CCTCAGA.................................................2111.001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATACAT-------------.....................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AAATAATCAGGATTTTG------TGTGTG............................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................GGATTTTG------TGTGTGGA--CCTCAGAATC..............................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TG-A-ATTTCAAATAATCAGGATTTTG------T.................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTCAAATAATCAGGATTTTG------T.................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................TCAAATAATCAGGATTTTG------TGT...............................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................TTTCAAATAATCAGGATTTTG------TGT...............................................................2411.001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAG------------GAA------CACACATATACA--------ATACCT-------------GA...................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TCAAATAATCAGGATTTTG------TGTGTGGA--........................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................ATCATGTTCCAGGCCTGGCAGGAT..........................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATA..................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CAACAGTGGTTCAGCGATCTCT.2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........ACAGAACTGGCTTACATCAAC........................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TAATCAGGATTTTG------TGTGTGGA--CCTCA...................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................TAAG------------GAA------CACACATATAC.................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................GTAAG------------GAA------CACACATATACA--------ATA.....................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TCAAATAATCAGGATTTTG------TG................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAG------------GAA------CACACATATACA--------ATAC....................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................TTTG------TGTGTGGA--CCTCAGATC...............................................2111.001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................ATTTCAAATAATCAGGAT............................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TTG-A-ATTTCAAATAATCA................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................TG-A-ATTTCAAATAATCAGGATT...........................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGAGAGCCAGTACAGAGCTGGCTTACATCAACCACAAGAATTTTCTGCAGGTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------GTCG-C-ATTTTATGTAATCAGGATTTTG------CGTGTGAA--CTTTAGATCATGTTCCAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGT.................................................211345.0034550121742530
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAG..................................................20190.0090300020670
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGA.................................................21186.0086203022590
.........................................................................................................................................GATTTTG------CGTGTGAA--CTTTAGT.................................................22123.002310103180
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGAA................................................22117.001710104110
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGTA................................................22113.00131020550
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCC....................................................................................................................22112.001210001100
.........................................................................................................................................GATTTTG------CGTGTGAA--CTTTAG..................................................21111.00111020260
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGAT................................................2219.0091000440
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------GTCG-C-..............................................................................................2917.0070200500
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------G....................................................................................................2517.0073010030
...................................................TAAG------------GAT------CGCACATAC--A--------ATCCCT-------------G....................................................................................................2416.0065100000
....................................................AAG------------GAT------CGCACATAC--A--------ATCCCT-------------G....................................................................................................2315.0055000000
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGTG................................................2215.0050000230
.........................................................................................................................................GATTTTG------CGTGTGAA--CTTTAGA.................................................2215.0050000230
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGC.................................................2114.0040000040
..................................................GTAAG------------GAT------CGCACATAC--A--------AT......................................................................................................................2013.0030000120
...................................................TAAG------------GAT------CGCACATAC--A--------ATCCCT-------------.....................................................................................................2313.0033000000
..................................................GTAAG------------GAT------CGCACATAC--A--------ATC.....................................................................................................................2113.0030000120
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGTC................................................2213.0030000210
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGTCA...............................................2312.0020000110
...........................................................................................................................................TTTTG------CGTGTGAA--CTTTAGT.................................................2012.0021000100
....................................................AAG------------GAT------CGCACATAC--A--------ATCCCT-------------.....................................................................................................2212.0021000010
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGG.................................................2112.0020000110
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------GT...................................................................................................2612.0021000100
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCCC...................................................................................................................2311.0010100000
..................................................GTAAG------------GAT------CGCACATAC--A--------........................................................................................................................1811.0010000010
.............................................................................................................................TTATGTAATCAGGATTTTG------CGT...............................................................2211.0010000010
.......................................................................................................................................AGGATTTTG------CGTGTGAA--CTTT....................................................2111.0011000000
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTA...................................................1911.0010000010
....................................................................................................................................ATCAGGATTTTG------CGTGTGAA--C.......................................................2111.0010000010
........................................................................................................................................GGATTTTG------CGTGTGAA--CTTTAG..................................................2211.0011000000
....................................................................................................................TCG-C-ATTTTATGTAATCAGGATTT..........................................................................2411.0010000001
...................................................TAAG------------GAT------CGCACATAC--A--------ATCCC...................................................................................................................2211.0010100000
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------.....................................................................................................2411.0011000000
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTATT.................................................2121.0020010010
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTATC.................................................2111.0010010000
.......................................................................................................................................AGGATTTTG------CGTGTGAA--CTTTT...................................................2211.0011000000
.......................................................................................................................................AGGATTTTG------CGTGTGAA--CTTTAG..................................................2311.0010000010
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGTGT...............................................2311.0010000010
..........................................................................................................................ATTTTATGTAATCAGGATTTTG------CGT...............................................................2511.0010000100
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAT..................................................2011.0010000010
..................................................GTAAG------------GAT------CGCACATAC--A--------ATCCCT-------------GTCG-................................................................................................2811.0011000000
.....................................................AG------------GAT------CGCACATAC--A--------ATCCCT-------------GT...................................................................................................2311.0010000100
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTAGAG................................................2211.0010000010
....................................................................................................................................ATCAGGATTTTG------CGTGTGAA--CTTTAG..................................................2611.0010000100
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTATCA................................................2230.3310010000
..........................................................................................................................................ATTTTG------CGTGTGAA--CTTTTT..................................................2040.2510000010
droYak3
TGAGAGCCAGTACAGAGCTGGCTTACATCAACCACAAGAACTTTCTACAGGTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GTAG-A-ATTTAATTTAATCAGGAATTTA------TGTGTGAA--CTTTAGATCATGTTCCAGGCCTGGCAGGATACCCAACAATGGTTCAGCGATCTCTTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------.....................................................................................................2411688.00168813662035313163122110
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------G....................................................................................................2511618.001618118236652123200100
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCC...................................................................................................................2311187.001187104974333141310000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCC....................................................................................................................221429.00429354421744620000
..................................................GTCAG------------GAT------CACACATAC--A--------TTC.....................................................................................................................211352.0035233416110000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCC-------------.....................................................................................................241225.0022519902600000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAG..................................................221158.001581797502100000
...................................................TCAG------------GAT------CACACATAC--A--------TTCCCT-------------G....................................................................................................24178.00781563000000000
....................................................CAG------------GAT------CACACATAC--A--------TTCCCT-------------G....................................................................................................23147.0047839000000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCG-------------.....................................................................................................24145.0045450000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTT.....................................................19128.0028260200000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAGT.................................................23128.0028022600000000
.....................................................AG------------GAT------CACACATAC--A--------TTCCCT-------------G....................................................................................................22127.0027126000000000
...................................................TCAG------------GAT------CACACATAC--A--------TTCCCT-------------.....................................................................................................23122.0022022000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTA...................................................21120.0020161300000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GT...................................................................................................26114.001429110010000
...................................................TCAG------------GAT------CACACATAC--A--------TTCCC...................................................................................................................22112.0012012000000000
..................................................GTCAG------------GAT------CACACATAC--A--------TT......................................................................................................................20111.001144101010000
...................................................TCAG------------GAT------CACACATAC--A--------TTCC....................................................................................................................2119.00909000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAGC.................................................2319.00900900000000
.........................................................................................................................................GAATTTA------TGTGTGAA--CTTTAGT.................................................2218.00801310030000
.........................................................................................................................................GAATTTA------TGTGTGAA--CTTTAG..................................................2117.00707000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAGA.................................................2317.00700700000000
....................................................CAG------------GAT------CACACATAC--A--------TTCC....................................................................................................................2016.00660000000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------T....................................................................................................2516.00603201000000
......................................................G------------GAT------CACACATAC--A--------TTCCCT-------------G....................................................................................................2115.00505000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTT....................................................2015.00501400000000
....................................................CAG------------GAT------CACACATAC--A--------TTCCCT-------------.....................................................................................................2214.00404000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAA..................................................2214.00401300000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CT......................................................1813.00300300000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GC...................................................................................................2613.00320100000000
...................................................................GAT------CACACATAC--A--------TTCCCT-------------G....................................................................................................2012.00220000000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GTA..................................................................................................2712.00202000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAC..................................................2212.00200200000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCA...................................................................................................................2312.00211000000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GTAG-A-..............................................................................................2912.00220000000000
....................................................CAG------------GAT------CACACATAC--A--------TTCCC...................................................................................................................2112.00211000000000
....................................................................AT------CACACATAC--A--------TTCCCT-------------G....................................................................................................1912.00220000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAT..................................................2212.00201100000000
..........................................................................................................................................AATTTA------TGTGTGAA--CTTTAGATCA..............................................2411.00110000000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------GTAG-................................................................................................2811.00101000000000
...................................................TCAG------------GAT------CACACATAC--A--------TTCCCT-------------GT...................................................................................................2511.00101000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTC.....................................................1911.00110000000000
.....................................................AG------------GAT------CACACATAC--A--------TTCCCC-------------.....................................................................................................2111.00100100000000
...........................................................................................................................TTTAATTTAATCAGGAATTTA------TGTGT.............................................................2611.00100000010000
.......................................................................................................................................AGGAATTTA------TGTGTGAA--CT......................................................1911.00110000000000
....................................................................AT------CACACATAC--A--------TTCCCT-------------GT...................................................................................................2011.00100000100000
....................................................................................................................................ATCAGGAATTTA------TGTGTGAA--CTTTAG..................................................2611.00100000010000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCA-------------.....................................................................................................2411.00101000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTG...................................................2111.00100100000000
.........................................................................................................................................GAATTTA------TGTGTGAA--CTTTAGA.................................................2211.00101000000000
.....................................................AG------------GAT------CACACATAC--A--------TTCCCT-------------.....................................................................................................2111.00100100000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTTAGG.................................................2311.00100100000000
.....................................................AG------------GAT------CACACATAC--A--------TTCCC...................................................................................................................2011.00100100000000
....................................................................AT------CACACATAC--A--------TTCCCT-------------GTAG-A-..............................................................................................2311.00101000000000
......................................................G------------GAT------CACACATAC--A--------TTCCCT-------------.....................................................................................................2011.00101000000000
.................................................................................................TCCCT-------------GTAG-A-ATTTAATTTAATC.................................................................................2311.00100100000000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCAC-------------.....................................................................................................2411.00110000000000
..........................................................................................................................................AATTTA------TGTGTGAA--CTTTAGAT................................................2211.00110000000000
........................................................................................................................................GGAATTTA------TGTGTGAA--CTTC....................................................2011.00100100000000
.....................................................................T------CACACATAC--A--------TTCCCT-------------G....................................................................................................1811.00110000000000
......................................................G------------GAT------CACACATAC--A--------TTCCCT-------------GT...................................................................................................2211.00101000000000
................................................................................................................................TTTAATCAGGAATTTA------TGTGTGAA--CT......................................................2611.00100000010000
..................................................GTCAG------------GAT------CACACATAC--A--------TTCCCT-------------A....................................................................................................2511.00110000000000
droEug1
TGAGAGCGAGCACGGAGCATGCGTACATCAATCATAAGAACTTCCTTCAGGTAAG------------GAT------CACACATAC--T--------ATCCC--------------GTTA-T-TTAGGAAATAATCAGGATGTTC------TGTGTGAC--CCTCAGATCATGTTCCAAGCTTGCCAGGATACGCAACAGTGGTTCAGTGATCTTTTSizeHit CountTotal NormTotal
No Reads
droBia1
TGCGGGCCAGTACGGAGAATGCGTACATCAATCACAAGAACTTTCTGCAGGTAAG------------GAA------CACACATAC--A--------ACTCCT-------------GTCG-----CCAAAGTAATCAGGAATTTT------TGTGTGTC--CCTCAGATCATGTTCCAGGCCTGGCAGGATACACAACAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
droTak1
TGAGGGCCAGCACAGAGCATGCGTACATCAATCACAAGAACTTTCTGCAGGTAAG------------GAT------CACACAGACACA--------AT-CCT-------------GTAA---AATGTAAATAACCAGGATTTTT------TGTGCGAT--CCTCAGATCATGTTTCAGGCCTGGCAGGATACGCAGCAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
droEle1
TGAGAGCCAGCACGGAGCACGCTTACATCAACCATAAGAATTTTCTGCAGGTTAG------------AAT------AACAGATATATATATATGCA--TATG-------------ATTG-T-GTCTCTATTAATCAGTGGTTTT------TGTTTAAATCCCCCAGATCATGTTCCAGGCCTGGCAGGATGCGCAGCAATGGTTTAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
droRho1
TAAGAGCCAGCACGGAACACGCGTACATCAATCACAAGAACTTTCTGCAGGTAAA------------GAT------CCCACTAAC--A--------TATTCG-------------GTTT-T-CTCTTAAATAAACAGAATTATT------TGTTCGAT-CAACCAGATCATGTTCCAGGCCTGGCAGGATACGCAGCAATGGTTCAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
droFic1
TGAGAGCCAGCACAGAGCATGCTTATATAAACCACAAGAACTTTCTGCAGGTAAG------------GAT------CGCACT-----------------CCATTAA---CATTTAGTTT---CTCTGGATTAATCTGGATTTCC------TGTTTGGA-TCTTTAGATCATGTTCCAGGCCTGGCAGGATACTCAGCAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
droKik1
TGAGGGCCAGCACAGAGCATGCGTACATCAATCACAAGAACTTCCTGC--------------------------------------------------------------------------------------------------------------------AAATCATGTTCCAGGCGTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
droAna3
TGAGGGCCAGCACGGAACATGCCTACATAAATCACAAAAACTTTCTGCAGGTGAG------------CAG------TTCAAGCTT-------------------AGCGAGGTCTGTTCC-AGTTTCCTAACATTC--------T----TCCGC-----TCCTTTAGATCATGTTCCAGGCCTGGCAGGACACACAGCAGTGGTTCAGCGACCTGTTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................AAATCACAAAAACTTTCTGC........................................................................................................................................................................2011.001010000
...........................................................................................................................................................................GTTCCAGGCCTGGCAGGACAC........................2111.001010000
.........................................................................................................................................................................ATGTTCCAGGCCTGGCAGGACACACA.....................2611.001100000
.....................................................................................................................................................................................TGGCAGGACACACAGCGA.................1890.111000100
droBip1
TAAGGGCCAGTACGGAACATGCCTACATAAATCACAAGAACTTCTTGCAAGTGAG------------GAT------TAGGGTCTTAGG--------ATTTAA----------------G-C-ATT-CCACTGACCACCATTTTC------CCCGCTTA--TTCCAGATCATGTTCCAGGCCTGGCAGGACACACAGCAGTGGTTCAGCGATCTCTTSizeHit CountTotal NormTotal
No Reads
dp5
--------------------------------CACAAGAACTTTTTGCAGGTAAGCC-----------AT------CAC--CAGCATTGAAAGCCA--------------------TTG-A-AATGCGTCTAAATAGCAGTCTC------TCTCC---TCCCACAGATCATGTTCCAGGCCTGGCAGGATACACAGCAGTGGTTCAACGATCTCTTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................................................................CAGCAGTGGTTCAACGATCTCTT2311.0010010000000
................................................................................................................................................................................................ACAGCAGTGGTTCAACGATCT...2111.0010100000000
droWil2
TGAGAGCTAGCACAGAGCATGCCTATATCAATCATAAAAACTTTTTACAGGTAAGCCACAAC-----GAT------GAA--T-GGCTCGAGGGAGA--------------------TTG-A-ACTCTATGTAATC----TCTTC--------ACTT--TCTTGCAGATAATGTTTCAGGCTTGGCAGGATACACAACAATGGTTTAACGATCTCTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................GTAAGCCACAAC-----GAT------GAA--T-.....................................................................................................................................1911.00101000
........AGCACAGAGCATGCCTATATCA..........................................................................................................................................................................................2211.00100010
................................................................................................................................................................................................ACAACAATGGTTTAACGATCT...2111.00100010
.GAGAGCTAGCACAGAGCATGCCT................................................................................................................................................................................................2311.00100010
............................................................................................................................................................................TTTCAGGCTTGGCAGGATA.........................1911.00100010
droVir3
TGCGGGCCAGCACGGAGCACGCTTACATCAATCACAAGAACTTTCTGCAGGTGCGTTCCCCCTGGCTGAT------CACATATGT--C--------GT--------------------T-T-ATACTAT---------ATTTTCGCCTTTTGC-----TCCTGCAGATCATGTTCCAGGCCTGGCAGGATGCGCAGCGTTGGTTCAGCGATCTGTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................................................................................................TGCGCAGCGTTGGTTCAGCG.......2013.0030000000000000000000000000000000000000000000000000000000000000000000000000300000
.......................................ACTTTCTGCAGGTGCGTTCCCCCT.........................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000020000000000000000
..................................................GTGCGTTCCCCCTGGCTGAT------C...........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000020000000000000000
...........................................................................................................................................................................................GATGCGCAGCGTTGGTTCAGCG.......2212.0020000000000000000000000000000000000000000000000000000000000000000000020000000000
droMoj3
TGAGGGCAAGCACGGAGCACGCATACATCAATTACAAGAACTTTCTCCAGGTGAGTTACG-------GTT------CAC----AT--A--------ATTCTC----------------G-T-ATTCCAAATAACGAAA--TCTT------TGT-----CCTTGCAGATCATGTTCCAGGCCTGGCAGGATGCGCAGCAATGGTTCAGCGATCTGTTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
TGAGGGCCAGCACGGAGCACGCCTACATCAATCCCAAGAACTTGCTGCAGGTGAG------------A-TTTTGATCGA----TT-------------------AATTAAGCCTGGCTCCCTTTGCTAAATATGCC--ACTTTT------TGTGT-----TGGCAGATCATGTTCCAGGCCTGGCGGGATACGCAGCAATGGTTCAGCGATCTGTTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:11 PM