ID:dsi_28771 |
Coordinate:3r:4554526-4554675 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
five_prime_UTR [3r_4554504_4554525_-]; CDS [3r_4554345_4554503_-]; exon [3r_4554345_4554525_-]; intron [3r_4554526_4566160_-]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AACAAAATTTACAACTTCAAAACTTTGCCAACGGCGGCTGTCCTGCCTGATGTGTGTTTGAGTTTTGAGTTTCGGGGGAATGTTATTTGTGTTTTTTTTTTTTGTATGGTTGAGGGGGGTGGGGCCAAGTACATAATTGAGATTGAACTGCAGGAACAAAGTTGAACTAATGCACAATCTTTGCTGGCTGCCAATTGCAGACCCGCCAGCCAACCGAAGGAGATGAATCGAACTTCGCTGTCCAGTGGCA **************************************************..((((.((((((((..((((((((....((((.(((((.(((((.(((((((.........))))))).))))))))))))))..)))))))))))))((((...((((((((..........))).)))))....))))))).)))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
M024 male body |
GSM343915 embryo |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................TATGGTTGTGGGGCTTGGGGCC............................................................................................................................ | 22 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................ATGGTTGAGGGGCGCGGGCCC............................................................................................................................ | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................TATGGTTGAGGGGCGCGGGCC............................................................................................................................. | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................CAACCGAAGGAGATGAATCGAACTTC.............. | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................TATGGTTGAGGGGCG................................................................................................................................... | 15 | 1 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................ATGGTTGTGGGGCTTGGGGCC............................................................................................................................ | 21 | 3 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................CGTATGGTTGAGGGGTGTG................................................................................................................................. | 19 | 2 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................ATATGGTTGAGGGGG.................................................................................................................................... | 15 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................TGGATGGTTGAGGGGTGTG................................................................................................................................. | 19 | 2 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................................................TACATGATTGAGATTGCA....................................................................................................... | 18 | 2 | 6 | 0.17 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................GGCAGTCGTGGCTGATGTGT................................................................................................................................................................................................... | 20 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................................................................................TGTGTTTTTTCTTTATGTAGG.............................................................................................................................................. | 21 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................ATATGGTTGAGGGGTGTG................................................................................................................................. | 18 | 2 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................................................................AACGAAGTTGAACTA................................................................................. | 15 | 1 | 13 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................................................TTGTATATGGTTGAGGG...................................................................................................................................... | 17 | 2 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................GTACGGTAGAGGGGGATGG................................................................................................................................ | 19 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................................................................................TTATATATGGTTGAGGGGT.................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................GTTTTTGGGTTTCGGGGGAA.......................................................................................................................................................................... | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
|
TTGTTTTAAATGTTGAAGTTTTGAAACGGTTGCCGCCGACAGGACGGACTACACACAAACTCAAAACTCAAAGCCCCCTTACAATAAACACAAAAAAAAAAAACATACCAACTCCCCCCACCCCGGTTCATGTATTAACTCTAACTTGACGTCCTTGTTTCAACTTGATTACGTGTTAGAAACGACCGACGGTTAACGTCTGGGCGGTCGGTTGGCTTCCTCTACTTAGCTTGAAGCGACAGGTCACCGT
**************************************************..((((.((((((((..((((((((....((((.(((((.(((((.(((((((.........))))))).))))))))))))))..)))))))))))))((((...((((((((..........))).)))))....))))))).)))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
GSM343915 embryo |
M023 head |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................AGAACGGACTACACTCCAAC.............................................................................................................................................................................................. | 20 | 3 | 1 | 143.00 | 143 | 143 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................AGAACGGACTACACTCCAACT............................................................................................................................................................................................. | 21 | 3 | 1 | 6.00 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................AGAACGGACTACACTCCAA............................................................................................................................................................................................... | 19 | 3 | 14 | 1.00 | 14 | 14 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................TGGGCGGTAGGTTGGATTCC.............................. | 20 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................AGGACGGACTACACTCCAACACA........................................................................................................................................................................................... | 23 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................ACGGACTACACTCCAAC.............................................................................................................................................................................................. | 17 | 2 | 11 | 0.55 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................CAGTTAACGTCTGGTCTGTCG........................................ | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................AGAACGGACTACACA................................................................................................................................................................................................... | 15 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................AAAAAAAAAAACATACCAACTTT....................................................................................................................................... | 23 | 2 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................TCCTCTCCTGAGCTTG................. | 16 | 2 | 20 | 0.10 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................................................................................................CCGTTAGTTAGCTTGAAGCG............ | 20 | 3 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................ACCATGCCAACTCACCCCA.................................................................................................................................. | 19 | 3 | 15 | 0.07 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................ACGGACTACACTCCAACTT............................................................................................................................................................................................ | 19 | 3 | 18 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................TCCTCTTCTGAGCTTGA................ | 17 | 2 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................................................................CCCGTGTTTCAACTTGATG................................................................................ | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................AAAAAAAACATGGCAACT......................................................................................................................................... | 18 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 09:45 AM