ID:

dsi_28761

 Coordinate:

3l:8145221-8145518 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-57.4 -57.3 -57.2

Flybase annnotation

CDS [3l_8144914_8145220_+]; exon [3l_8144907_8145220_+]; CDS [3l_8145519_8145797_+]; exon [3l_8145519_8145797_+]; intron [3l_8145221_8145518_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCACGAGATGACGGACGCCCTCAAAGATCTGGAGTTGGAACGCGGCGTAGGTGAGTGAAGAAACACAACTGAGAGGGTGGAATGGGTTGCCCTGGGTAGCCTGAAGTAAACTCAGTCGTTGCCCAACGCCAGCTGTGCACACAACGTCGCGGTCGCTCCACTATTGGAAACATCAAACGATTGCTAAGCCTAACCAGCTGCAATCTTATCGGCGCAGAGCCGTAGTGCTACGCTGTCATGGAAACAACGACAAACAAACCGAATAATAATACTTTCCTTAAACAAAATTCCGCATAATTCGACATTTCTTATTGCTCGTCGCGTAATTGACAATTAACATATTTGCAGCTGCCAGTGGGGAGAAGTCAGCGCAACGTGCTCCGAGTCATCAGCAAAAG
************************************************************************....(((((((((((((((...))))))))............(((((((.(((....((((.((((((........((....))((((....))))..........((((((..(((.......)))))))))....((((.....))))..)))).))))))...)))...)))))))...................................)))))))........................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
.....................................................................................................................................................................................................................................................................................................ATAATTCGACATTTCTTATTGCTC................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................GAGGGTGGAATGGGTTG..................................................................................................................................................................................................................................................................................................................... 17 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................GTGCACACAACGTCGCGGTCG................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........CGGACGCCCTCAAAGATCTGGAGTTGGA....................................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................TTGGAACGCGGCGTAGGTGAG....................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.CACGAGATGACGGACGCCCTC........................................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................TGGAGTTGGAACGCGGCGTA............................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................GTCGCGGTCGCTCCACTATTGGAAA.................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................CATGGAAACAACGACAAACAAACCG......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACACAACGTCGCGGTCGCTC................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................CTGTGCACACAACGTCGCG....................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................ACAACTGAGACGATGGAATGT......................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................GAAACATCAAACGAT......................................................................................................................................................................................................................... 15 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.................................................................CAACTGAGACGATGGAATGT......................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAACAAAGCGAATTATAATACA............................................................................................................................. 22 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................CGCTGCCACGGAAAGAACG..................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0
...............................................................GACAACTGAGACGATGGAAT........................................................................................................................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0
..................................................................................TGGGTTCCCCTGGGT............................................................................................................................................................................................................................................................................................................. 15 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................CTCAGTCGCTTCCCAA................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..............................................GTAGGTCAGTGACGAAGC.............................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................TCATATTGCCCGTCGC............................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CGTGCTCTACTGCCTGCGGGAGTTTCTAGACCTCAACCTTGCGCCGCATCCACTCACTTCTTTGTGTTGACTCTCCCACCTTACCCAACGGGACCCATCGGACTTCATTTGAGTCAGCAACGGGTTGCGGTCGACACGTGTGTTGCAGCGCCAGCGAGGTGATAACCTTTGTAGTTTGCTAACGATTCGGATTGGTCGACGTTAGAATAGCCGCGTCTCGGCATCACGATGCGACAGTACCTTTGTTGCTGTTTGTTTGGCTTATTATTATGAAAGGAATTTGTTTTAAGGCGTATTAAGCTGTAAAGAATAACGAGCAGCGCATTAACTGTTAATTGTATAAACGTCGACGGTCACCCCTCTTCAGTCGCGTTGCACGAGGCTCAGTAGTCGTTTTC
*********************************************************************************....(((((((((((((((...))))))))............(((((((.(((....((((.((((((........((....))((((....))))..........((((((..(((.......)))))))))....((((.....))))..)))).))))))...)))...)))))))...................................)))))))........................************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M053
female body
.......................................................................................................................................................CGGCGATGTGATAACCTTG.................................................................................................................................................................................................................................... 19 3 12 12.75 153 78 49 2 5 8 8 2 0 0 1
.......................................................................................................................................................CAGCGATGTGATAACCTTG.................................................................................................................................................................................................................................... 19 2 2 4.50 9 4 4 0 1 0 0 0 0 0 0
............................................................................................................................................TGTTGCAGCGCCAGCGAGGTG............................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CCGGCGATGTGATAACCTTG.................................................................................................................................................................................................................................... 20 3 4 1.25 5 4 1 0 0 0 0 0 0 0 0
....................AGTTTCTAGACCTCAACCTTG..................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................GGCGATGTGATAACCTTG.................................................................................................................................................................................................................................... 18 3 20 0.90 18 1 0 1 0 12 1 2 1 0 0
.................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTACGAGGCTCAG........... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTGTTTCGCTTAATATTATG.............................................................................................................................. 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.............................ACCTCGACCTTGCGCCG................................................................................................................................................................................................................................................................................................................................................................ 17 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................TTTTAAGGGGTATTAAGGTGA.............................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................ATTATGAAAGGCGTTTGTTTTT.............................................................................................................. 22 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
.........CTGGGTGCGGGAGTTTCT................................................................................................................................................................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TCAGGAATGGGTTGTGGTC.......................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................AGAGTGTTGCAGCGCC...................................................................................................................................................................................................................................................... 16 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................CGATGTGATAACCTTAG................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................ACTTTGTTTGAGTCAGC........................................................................................................................................................................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
....................AGTTTATAGACCTCA........................................................................................................................................................................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................TCAGGAAGGGGTTGTGGTC.......................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCTCGTGATCACAATGCG..................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................GCTTAGTAGTCGTTT.. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................ATTGTAGTAGGCTAACGAT.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:44 AM