ID:

dsi_28754

 Coordinate:

3l:7366221-7366350 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7365566_7366220_+]; CDS [3l_7365566_7366220_+]; CDS [3l_7366351_7366449_+]; exon [3l_7366351_7366449_+]; intron [3l_7366221_7366350_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------##################################################
TGCTGCAGGTGCGGCAACACCAGCACAAGAGCAACAGCGTCTCGAAATGGGTAAGATACTTTTTACAAATACTGTATGCAGATGAGGCTGTGCTAAATCAAATTCACTCTTGGCCTTAGACAAGTAATTCGTGTCTCTGAATCGTAAATATTCCCGTATTATTTGTTGACAATATTCTAGATCACGACCACGATCAAGCTCAAAGTGAAACTCCCGAACGAGAAACCCGA
**************************************************((((((....)))))).....(((....))).((((((((((............)))....)))))))((((((((((.((.......................)).)))))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................................................................................GTGAAACTCCCGAACGAGAAACCC.. 24 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................GTGAAAGTCCCGTACGTGA....... 19 3 12 0.50 6 6 0 0 0
..........................................................................................................................................................AGTATTATTTGTTGACA........................................................... 17 1 3 0.33 1 1 0 0 0
...............................................................................................................................................GTCAATATTCCCGTA........................................................................ 15 1 5 0.20 1 1 0 0 0
.........................................TCGAAATGGGTAAAATA............................................................................................................................................................................ 17 1 7 0.14 1 0 0 1 0
.........................................................................GTATGCAGCTGAGGC.............................................................................................................................................. 15 1 7 0.14 1 1 0 0 0
...............................................................................................................................................GTTAATATTCCCGTA........................................................................ 15 1 7 0.14 1 0 0 0 1
.................................................................................................................................................................................................ACAAGCTCAAAGTGAA..................... 16 1 9 0.11 1 0 0 1 0
...............................................................................................................................................GTTAATATTCCCGTACTAG.................................................................... 19 3 18 0.06 1 1 0 0 0
.........................................................................................................................................................................................................GAAGTGGAACTCCCGACCG.......... 19 3 19 0.05 1 0 0 0 1
..................................CAGCGTTTCGAAATG..................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0
............................................................................................................................................................................................................GTGAAAGTCCCGTACGTG........ 18 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

ACGACGTCCACGCCGTTGTGGTCGTGTTCTCGTTGTCGCAGAGCTTTACCCATTCTATGAAAAATGTTTATGACATACGTCTACTCCGACACGATTTAGTTTAAGTGAGAACCGGAATCTGTTCATTAAGCACAGAGACTTAGCATTTATAAGGGCATAATAAACAACTGTTATAAGATCTAGTGCTGGTGCTAGTTCGAGTTTCACTTTGAGGGCTTGCTCTTTGGGCT
**************************************************((((((....)))))).....(((....))).((((((((((............)))....)))))))((((((((((.((.......................)).)))))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................................................................CTAGTACTCTTGCTAGTTCG............................... 20 3 4 1.00 4 4 0 0 0 0 0 0
................................................................................................TAGCTTAAGTGAGAACC..................................................................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0
...............................................................................................................CGGGAATCTGTTCAGTATGC................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0
......................................................................................CGACAGGAGTAAGTTTAAGTG........................................................................................................................... 21 3 7 0.29 2 0 1 0 0 0 1 0
...................................................................................................................................................................................................................AGGGCTTCCTCTTCGGGAT 19 3 14 0.21 3 0 0 0 3 0 0 0
...................................................................................................................................................................................................................AGGGCTTCCTCTTTG.... 15 1 7 0.14 1 0 0 0 0 1 0 0
....................................................................................................................................................................................TAGTACTCTTGCTAGTTCG............................... 19 3 20 0.10 2 2 0 0 0 0 0 0
...................................................................................................................................................................................CTAGTACTCTTGCTAGTTC................................ 19 3 20 0.10 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGGCTTCCTCTTCGGG.. 17 2 17 0.06 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AGTTTCATTTTCAGGGC.............. 17 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 06:12 AM