ID:dsi_28747 |
Coordinate:3l:11526919-11526990 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_11526669_11526918_-]; CDS [3l_11526669_11526918_-]; CDS [3l_11526991_11527187_-]; exon [3l_11526991_11527187_-]; intron [3l_11526919_11526990_-]
No Repeatable elements found
| ##################################################------------------------------------------------------------------------################################################## AAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCAATATGACGTGAAATTGTAAGTTTCCATCTGTCCCTTGGTAAGCCGCAAGTAAACTTTTGTTTGTTTGTTTTTTTTCACTCCATTCAGCGGTGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAACACCCA **************************************************............((......(((......((((((((((....))))))))))......)))........))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR902008 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
M023 head |
O001 Testis |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................TGGTAGACTACGATCTGGATTCAACA.... | 26 | 0 | 1 | 3.00 | 3 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
| ...........CTCCCTAGTCGACAAAGAGAACC.......................................................................................................................................... | 23 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 |
| ................................................................................................................................TGGGCAGAAGGAGCTG............................ | 16 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................AGCTGGTAGACTACGATCTGGAT.......... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........GGCCTCCCTAGTCGACAAAGAGAACC.......................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................TTCGGTGCTGGGCAGAAGGAGCTGG........................... | 25 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................TCGACAAAGAGAACCAATATGACGTGA.............................................................................................................................. | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................TTCGGTGCTGGGCAGAAGGAGCTG............................ | 24 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................GGAGCTGGTAGACTACGATCTGGATTCA....... | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................................................TTTTTCACTCCATTCAGA................................................. | 18 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................GGCAGAAGGAGCTGGTAGACTACGAT................ | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................TCGGTGCTGGGCAGAAGGAGCTGGTA......................... | 26 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............CCCTAGTCGACAAAGAGAACCAATA...................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................GCAGAAGGAGCTGGTAG........................ | 17 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...TCCCTGGCCTCCCTAGTCGACAAAGAGA............................................................................................................................................. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................GAGCTGGTAGACTACGATCTGGATT......... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............TCCCTAGTCGACAAAGAGAACCAA........................................................................................................................................ | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................AGGAGCTGGTAGACTACGAT................ | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................GTAGACTACGATCTGGATT......... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................CTGGGCAGAAGGAGCTGGT.......................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............CTAGTCGACACAGAGAACC.......................................................................................................................................... | 19 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................GCTGGGCAGAAGGAGCTT............................ | 18 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................AGAGAACCAATATGACGTG............................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................ATATGACGTGAAATTC......................................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................................................................GAAGGACGTGGTAGACCACG.................. | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................CTACGCTCTGGATACA....... | 16 | 2 | 20 | 0.20 | 4 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 |
| .......................................................................................................................ATTCGGTGCTGGGCAGAAGGA................................ | 21 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................TAGCCGACAAAGAGAA............................................................................................................................................ | 16 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..................................................................................................................................................AGCCTACGCTCTGGATACA....... | 19 | 3 | 12 | 0.17 | 2 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................GTAGACTACGAGGTCGAT.......... | 18 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
|
TTTAGGGACCGGAGGGATCAGCTGTTTCTCTTGGTTATACTGCACTTTAACATTCAAAGGTAGACAGGGAACCATTCGGCGTTCATTTGAAAACAAACAAACAAAAAAAAGTGAGGTAAGTCGCCACGACCCGTCTTCCTCGACCATCTGATGCTAGACCTAAGTTGTGGGT
**************************************************............((......(((......((((((((((....))))))))))......)))........))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
M023 head |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................ATCTGTTTCTCTTGGT......................................................................................................................................... | 16 | 1 | 2 | 2.50 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................AAAAAAACTGAGGTACGTCGCCCC............................................. | 24 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......GACCGGAGGGATCAGCTG.................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................ATCTGTTTCTCTTGGTTTTA..................................................................................................................................... | 20 | 2 | 6 | 0.67 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............AGGGATCAGCCGTATC................................................................................................................................................ | 16 | 2 | 19 | 0.58 | 11 | 2 | 3 | 1 | 4 | 0 | 1 | 0 |
| ...................ATCTGTTTCTCTTGGTTTTAC.................................................................................................................................... | 21 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................ATCTGTTTCTCTTGGTT........................................................................................................................................ | 17 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................ACCATTCGGCGTTCCT...................................................................................... | 16 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................TCTGATGCTAGGCCT........... | 15 | 1 | 8 | 0.25 | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................ATCTGTTTCTCTTGGTTTT...................................................................................................................................... | 19 | 2 | 11 | 0.18 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................CAAGAAAAAGTGAGG........................................................ | 15 | 1 | 20 | 0.15 | 3 | 0 | 0 | 2 | 1 | 0 | 0 | 0 |
| ...................ATCTGTTTCTCTTGGTTTTAG.................................................................................................................................... | 21 | 3 | 14 | 0.14 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................TCTGATGCTAGACTT........... | 15 | 1 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................CGTCTGATGCTAGGCCTGA......... | 19 | 3 | 16 | 0.13 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................................................CGTCTGATGCTAGGCCT........... | 17 | 2 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TAGAAGCGGAACCATTCGGC............................................................................................ | 20 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................TCTGATGCTAGGCCTGAT........ | 18 | 3 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................GATCTGTTTCTCTTGG.......................................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............AGGGATCAGCCGTAT................................................................................................................................................. | 15 | 2 | 20 | 0.10 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................................AAAGTGAGGGAAGGCCCCA.............................................. | 19 | 3 | 12 | 0.08 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................AACGTCTGATGCTAGGCCT........... | 19 | 3 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............GGGATCAGCCGTATCT............................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................AACGTCTGATGCTAGGCC............ | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................CTTATGCTAGACATAACTT...... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ........GCGGCGGGATCAGCGGTTT................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................TCTGTTTCTCTTGGT......................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................GATCTGTTTCTCTTGGT......................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:26 AM