ID:

dsi_28729

 Coordinate:

2r:2056895-2057044 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

TAGAGACTCGAATAAATAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGTACTCTCTTTCAATTTAAATAATAAACTATTTATACTAAACTAAATATTTTTACCTGTCATTCATTTGGTATTTTAATCGCATTCCTTCTTAACATAATAAGTTGTTTACCTATTCTTTAATTAACATTCCAATTTTCAATTGATCTTAACCTGTCTGGGAAAACCCATCAATAAGTTAGGTAGCAACAACCGAT
**************************************************..............((((((((((((......))))))................................((((.((.(((((.............((((........)))).............))))).)).)))).....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
..................AACTTGAAAAAGAATGCGATTCCCTAAA............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0
......................................TCCCTAAAAGCTGTAAGTACTC.............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................CAATTGATCTTAACCTGT........................................ 18 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................TGGGAAAACTCATCAATAAGTTAGGT............. 26 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTATCGTTCATTTG............................................................................................................................... 20 3 12 0.25 3 0 0 0 0 3 0
..........TATAAATAAACATGAAAAAGACT......................................................................................................................................................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0
..................................TGATTCCATTAAAGCTGTAA.................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 1
..............................................................................................................................................TCTTAACTTAATAAGTC........................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

ATCTCTGAGCTTATTTATTTGAACTTTTTCTTACGCTAAGGGATTTTCGACATTCATGAGAGAAAGTTAAATTTATTATTTGATAAATATGATTTGATTTATAAAAATGGACAGTAAGTAAACCATAAAATTAGCGTAAGGAAGAATTGTATTATTCAACAAATGGATAAGAAATTAATTGTAAGGTTAAAAGTTAACTAGAATTGGACAGACCCTTTTGGGTAGTTATTCAATCCATCGTTGTTGGCTA
**************************************************..............((((((((((((......))))))................................((((.((.(((((.............((((........)))).............))))).)).)))).....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 O001
Testis
.......................................................................................................................................................................................................AGAATTGGACAGACCCTTTTGAGTAGT........................ 27 1 1 8.00 8 2 0 6 0 0 0 0
.................................................................................................................................................................................................................AGACCCTTTTGAGTAGTTATTCAATCCAT............ 29 1 1 7.00 7 3 1 3 0 0 0 0
.................................................................................................................................................................................................................AGACCCTTTTGGGTAGTTATTCAATCCAT............ 29 0 1 6.00 6 1 4 0 1 0 0 0
............................................................................................................................................................................................AAAAGTTAACTAGAATTGGACAGACCCT.................................. 28 0 1 6.00 6 4 0 1 1 0 0 0
.....................................................TCATGAGAGAAAGTTAAATTTATTAT........................................................................................................................................................................... 26 0 1 5.00 5 3 0 2 0 0 0 0
..............................................................................................................................................................................................AAGTTAACTAGAATTGGACAGACCCTT................................. 27 0 1 4.00 4 0 0 3 1 0 0 0
...............................................................................................................................................................................................AGTTAACTAGAATTGGACAGACCCTT................................. 26 0 1 4.00 4 1 1 1 1 0 0 0
..............................................................................................................................................................................................AAGTTAACTAGAATTGGACAGACCCT.................................. 26 0 1 4.00 4 2 0 1 1 0 0 0
........................................................................................ATGATTTGATTTATAAAAATGAACAGT....................................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................AGACCCTTTTGAGTAGTTATTCAAT................ 25 1 1 2.00 2 2 0 0 0 0 0 0
.....TGAGCTTATTTATTTGAACTTTTTCTT.......................................................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0
..............................................................................................................................AAAATTAGCGTAAGGAAGAATTGT.................................................................................................... 24 0 1 2.00 2 0 1 1 0 0 0 0
.................................................................................................................................................................................................................AGACCCTTTTGGGTAGTTATTCAAT................ 25 0 1 2.00 2 0 1 0 1 0 0 0
...............................................................................................................................................................................TAATTGTAAGATTAAAAGTTAACTAGAAT.............................................. 29 1 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................AGAATTGTATTATTCAACAAATGGAT.................................................................................. 26 0 1 2.00 2 0 0 1 1 0 0 0
.............................................................................................................................................................................................AAAGTTAACTAGAATTGGACAGACCCTT................................. 28 0 1 2.00 2 1 0 0 1 0 0 0
...................................................................................................................................................................................TGTAAGATTAAAAGTTAACTAGAAT.............................................. 25 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................AAGAAATTAATTGTAAGGTTAAAAGT........................................................ 26 0 1 2.00 2 0 2 0 0 0 0 0
............................................................................................................................................................................................AAAAGTTAACTAGAATTGGACAGACCCTT................................. 29 0 1 2.00 2 1 0 0 1 0 0 0
..............................................................................................................................................................................................AAGTTAACTAGAATTGGACAGACCCTTT................................ 28 0 1 2.00 2 0 1 1 0 0 0 0
........................................................................................................................................................................AAGAAATTAATTGTAAGATTAAAAGT........................................................ 26 1 1 2.00 2 2 0 0 0 0 0 0
...............................................CGACATTCATGAGAGAAAGTTAAATT................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................TAAAAGTTAACTAGAATTGGACAGACCCT.................................. 29 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................AAGAAATTAATTGTAAGGTTAAAAGTT....................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................GAAATTAATTGTAAGGTTAAAAGT........................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................TCATGAGAGAAAGTTAAATTTATTA............................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................TCATGAGAGAAAGTTAAATTTATTATTTGAT...................................................................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AGATTAAAAGTTAACTAGAATTGGACAG....................................... 28 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................AGAATTGTATTATTCAATAAATGGATA................................................................................. 27 1 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................AGTTATTCAATCCATCGTTGTTGGCTA 27 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................AAAATTAGCGTAAGGAAGAATTGTAT.................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................AAAATTAGCGTAAGGAAGAATTGTATT................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................AATGGATAAGAAATTAATTGTAAGGT............................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................AGAATTGGACAGACCCTTTTGAGTAG......................... 26 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................GGGTAGTTATTCAATCCATCGT......... 22 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................TAATTGTAAGATTAAAAGTTAACT................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................TCAAAAAATGGATAAGAAATTAATTGT.................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0
........................................................TGAGAGAAAGTTAAATTTATTATTTGAT...................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................AAAAGTTAACTAGAATTGGACAGACCC................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................AGAATTGTATTATTCAACAAATGGATA................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................AAGTTAACTAGAATTGGACAGACCC................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................AAGATTAAAAGTTAACTAGAATTGGAC......................................... 27 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................................................................TAATTGTAAGGTTAAAAGTTAACTAGAAT.............................................. 29 0 1 1.00 1 0 0 0 1 0 0 0
.....TGAGCCTATTGATTTGAAGTTT............................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0
..........................................................AGAGAAAGTTAAATTTATTATTTGAT...................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................ATGAACAGTAAGTAAACCATAAAAT....................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AGGTTAAAAGTTAACTAGAATTGGAC......................................... 26 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................TAAAAGTTAACTAGAATTGGACAGACCCTTT................................ 31 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................ATGGATAAGAAATTAATTGTAAGGTT.............................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
......................................AGGGATTTTCGACATTCATGAGAGA........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................AAGGAAGAATTGTATTATTCAACAAAT...................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................AGAATTGGACAGACCCTTTTGGGTAGT........................ 27 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................AAGAATTGTATTATTCAACAAATGGAT.................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................AAAAGTTAACTAGCAT.............................................. 16 1 3 0.67 2 0 2 0 0 0 0 0
..........................................................................................................AGTGACAGTAAGTAAACGATAA.......................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................CAAAAATGGACATTAAGT................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1
.....................................AAGGGACTTTCGACAT..................................................................................................................................................................................................... 16 1 7 0.14 1 0 1 0 0 0 0 0
..................................................................................................................................TTAGCGCAAGGAAGAAGT...................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0
...................................CTAAGGTAATTTCGACAT..................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2056845-2057094 + dsi_28729 TAGAGACTCGA----------------ATAAA-TAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGT--ACTCTCTTTCAATTTAAATAATA-----------------------------------AAC-------TATTTA-------------------------------------TACTA-----------AACTAAATATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----------------------------------------------CTGTCATT------------------------CATTTGGTATTTTA-ATCGCATTCCTTCTTAACATAATAAGTTGTTTACCTATTCTTT-----AATT------------------------------------------------------------AACATTCCAATTTTCAAT---------TG----------------------------------------------------------------------------------------------------------------------ATCTTAACCTGTCTGGGAAAACCCATCAATAAGTTAGGT-------------AGCAACA--ACCGAT
droSec2 scaffold_42:268180-268446 + TAGAGACTCGA----------------ATAAA-TAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGT--ACTCTCTTTCAATTTAAATAATA-----------------------------------AAC-------TATTTAAA-----------------------------TAATAA-ACTATTTAAATAATAA-----A-------------------------------------------------------------------------------------------------------C-----TATTT-----------------------------------------------------------------------------------TAC-----------------------------------------------TCGTCATT----------------TG---G-TCATTTGGTATTTTA-ATCGCAATTCTTCTTAACATAATAAGTTGTTTACCAATTCTTT-----AATT------------------------------------------------------------AACATTCCAATTTTCAAT---------TG----------------------------------------------------------------------------------------------------------------------ATCTTAACCTGTCTGGGAAAACTCATCAATAAGTTAGGT-------------AGCAACA--AACGAT
dm3 chr2R:1036612-1036843 + TAGAGACTCGA----------------ATAAA-TAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGT--ACTCTCTTTCAGTTTAAATAATA-----------------------------------AAC-------T-------------------------------------------------------------TACCTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----------------------------------------------TTGTCATT----------------CGAAAGCAAATTTGGTAATTTA-ATCTCATTCCTTCTTAACATAATAAGTAGGTTACTTATTCT-T-----AATT------------------------------------------------------------AGCCTTCCAATTTTCATA---------TG----------------------------------------------------------------------------------------------------------------------ATCTCAACATGTCTGAGAAAACGCACCAGTAAGT---------------------------AAGGTA
droEre2 scaffold_4929:21688662-21688821 - TGGAGACTCGA----------------GTAAA-TACACTTGAAAAAGAATGCGATGCCCTAAGAGCTGTAAGT--ACTATCTTTAAATTAAAAAAA----------------------------------------ATTTTACAAATTT-------------------------------------TACAA-----------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTGGTAATTTA-ATCGCATTCCTCCTTTTCATAAGTAC------------CCT-T-----ATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTTC--CTTTAA
droYak3 v2_chr2L_random_028:918490-918655 + TGGAGACTCGA----------------ATAAA-TAACCTTGAAAAAGAATGCAAAGGACTTACCGCTGTAAGT--ACTATCTTTAAATTAA-----TA-----------------------------------AACATTTA-----------------------------------------------------------------ACACATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC-----------------------------------------------TTATCATT----------------CG-----GAATATGATAATATATAT---AACCCTGCTTTACACGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCTTGGCT-------------AAAATTG--AACTAA
droEug1 scf7180000409440:66026-66228 - TAAAGACTTAA----------------ATGAA-T---TTTAAAAGAAA-T-----------------------------C------------------TTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAACGTTGAATTGCAATTAAAATAAAAACTGTTTAAATAATA-CAAC-----CTTCAATTT---------T-ATATTGCAACAACGTACACCTTTTACAAAGAA-ATG----------------------------------------TACTCAAAATATTCAATTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TG----------------------------------------------------------------------------------------------------------------------TTTTTTTAATTGCTATAAAAACAAATAAATAAACAGATT-------------TATTATA--CCCGTT
droBia1 scf7180000302422:371877-372046 + AATTGAAGAAA----------------TTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATTTTAA-A-----TACT------------------------------------TTTAGTA-------------------------------------------C-----------------------------------------------AAGTCTTT------------------------AAGTTCGTTTTTTT-ACCAACCTGACTGTTGATAGAATAGTTTTTTTTTT----------------------AA----------------A-------------------TAC-TTACTTTAAAATATACATTTCAAGATAAA-------------------------------------------------------------------------------------------------------------------ATCC------------ATGTTAATTTTTGTA--------------------CTCT-------------ATAAACA--ACATAC
droTak1 scf7180000413983:2013-2236 - GAAAAAATGTG----------------T------------------------TAGTCCCTTAAGAC-----------ACT------------------ATTTTAGTATTTAGT---------ATTAGACTAATGAT-------GA----------------------------------------------------------------TATTTT-------------------TA----------------------------------------------------------------------------CTGACCT-----GTTTT--------------------------------------------------------ATTTC----------------------------------------TAGTTTCATTTGTAGTTCCATTTAACTTATGATC-------------------------------------------------------------TTTGTTGTTTACCTTTTT-AGCATTTTGTG------------------------------------------------------------AACTTATAATTTTTTCCT---------TA----------------------------------------------------------------------------------------------------------------------TGCATGGTCTGTAAGAGAAAAGCAGAAAAAATGTT--GTCGTTGT-------G--GGCAGTGAAACC
droEle1 scf7180000490902:5829-6054 + TAGAAATTAAT----------------A-------AAATCGAATAAAATTATAACTTAT--AAAATTATAAA--------------GTTTTAATTAAA-----------------------------------AAT-------TAGTAA-------------------------------------TATTA-----------A------------------------------------------ATGATATTAGAGAATTATA------------------------------------------------C-----TTGTA---------------T-G---------------------------------TTCATGAATTG--AACATTTTTAACCTATCTTAAC-----------------------------------------------GTACTATC------------------------------------------------------------TGCTGTTATTCATATTGTCTTT-----AATT----TTA----------------A-------------------TATATTTA-T-------------------------TTGACTTGTT----------------------------------------------------------------------------------------------------------------TCGTTTACT------------------------ATATAGGGTCTTT-------------AATAATG--ATTATC
droRho1 scf7180000766354:1803-2075 - TTAAAATTTTA----------------ATAAA-TATCGTTGAGTTAAAA--AGATTCTCCAATTGTTATGAACAAAT---------------------AAATAAGTTCATCAA---------ATTAAATAACAAAA-------TAT--A-------------------------------------ATCTT-----------ACATAAATAATTT--------TAATTAACATTTATATAAACATTTTTTTAAATTATTTTTTTTATAACGCATCGAATTGCAA------AAATTACTTTTTATATAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------CC-T-----TTTT-------GATTTTTTTTTTGAACA-------------------TGC-TTTCATT---------------------------------------------------------------------------------------------------------------------ACTTTTCCACTACAAGTAGGCACA-------------------------------------------ATGCTACT-------------AGTTATA--CCCGTT
droFic1 scf7180000454086:196405-196461 - TGGAGTCTCAA----------------ATAAT-TAACCTTAAAAAAGAATACGATTCCATAAAAGCAGTAAGT--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302469:487839-488093 - GATTTTTTAAA----------------AATGG-TTAA-----TATAACA--TATTTCA--------------------------TAATTTATTATATA-----------------------------------TAT-------TTTTTA-------------------------------TATTAT-ATTATTTTAATTATTT-----A-------------------------------------------------------------------------------------------------------A-----TTTTTTATTT--------------------CTTTTTTTTAATTTGTACAAATAATTG-------------------AATTTTTTTTTTGATTTTCTAG-----------------------------------------------------------------------------------------------------------GAGTATTTATTTATTTTTTT-TT-----AATG------------------------------------------------------------AATATATTTATTTTTTTT-----------------------------------------------------------------------------------------------ATTT---------GTAGAAATTATG--GCAATT-ATTTTAGATTTTCTATAAAAATTTTTGTATATTTTA----------------TATAAAA--ATAAAT
droAna3 scaffold_13266:8585273-8585528 - CGACTAAA----------------------------TTTTGAAAAATAATTTTTTTTCTTAAAAA------------------------------------------------------------AAA-----------------------AGTTTATTTTCAGTGTATTTTTTTTTGTGTA---------------CTATAT-----------------------------------------------------------------AGACGTTTGGTCCCAAAGAAAGTG----------------------------------------------------------------------AAATAGATATTTA-------------------AAAACCCCTTTCAACGGTGTAAAGCTC-------------------------------------TT--------------------------------------TTTA-AT----ATCTTTCTTAAT-TATAAAGTTATGAATTTTTTCATT-----AACA------------------------AAGTTTTTTTAATTTTTTG--------------------------------ACG---------TA----------------------------------------------------------------------------------------------------------------------AGCTTAAGGTATTTCAA------------AAAGTTGTAG--A--AC------AATAGTT--GCTCAT
droBip1 scf7180000392189:875-1143 + TAAGTATTTAA----------------ATAAA-AAAAATAGGTAACGAATGAAATAAAATA----TATCGAAT--ATTTTCTATTAATTTAAAATATAAAATTAATTTTTATTTTTTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTATTTATGTTTTCTAGAAATAACACTAATTTATTTCTTTC----------------------------------------AACTTAAATTTTTGTTTATTCTTGATTTAAA--------------------------------------CTA-ATTGTATTTATCCTTTCAATAATTAA------------TAT-T-----AT---------------------------------------------TACCTTATTT-------------------------CTGATCTGT---------------------------------------------------------------------------------------------------------------------------------CTCGTATCAGAAATAACATATTTTTTA--------TG------TGTAGGT--ACCGAT
dp5 3:3199484-3199659 + TTTAATTAATT----------------T----------------------------------------------------TATTTATTTTAACTAA--------------------------------------AT-------T-------------------------------------------------------------TATTTATTTTAATTAATTTTATTTATTTTAATTAAATCAATTTATTTTAATGGTTTTTA-----------------------------------------------------------------------------------------------------TTTATTGCACTAACTAATTATTAAC-----------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATTCC-A-----TATT-------AATTTTTTAATTATAT----------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------ATTTTCATTT-------------------------ATTT-------------AATTATA--CCCGAT
droPer2 scaffold_6:2803282-2803490 + AAAGAATGCAC----------------CTAAAATTTGTTTAAAATATAGTACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------TAAGTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-----------------------------------------------TCATTATT--------------------------TCTGGTATTTTA-CCCATATTTTTTCT-AGTACTATGTGGTTGTTACTTTTTCTGG-----TATTTTTTTCA----------------T-------------------TACTTTGATTAAATCCATACGTATACAGGCAGG-------------------------------------------------------------------------------------------------------------------CTCCGTTTTTCATTTACT------------------------TTTGAGGAT--TACGTTTT-------C--AGCCAAAACGTT
droWil2 scf2_1100000001849:9208-9461 - TAAAACCTCAA----------------AAAGT-AAAATTT--------------------------------------------------------------------TCATTTTTTCTGAG-AAAAT-CAC-------------------GATTTAGTAA-AAATTATGTTTTTTTACATAGAAA-ATCGCTAAAACC-----TCAAATATTCT----------------------------------------------------------------------------------------------------CACC-----TAACCCCAACTTTGTGAACCTGTAATAGTGTCAATTTTTGACCGATTT-TTG----------------------------------------AAATT-------------------------------------------------------------------------------------------------------------AATATATCAGTTTATC-----CATC------------------------------------------------------------AGCAAATTGACTTTCAGT---------TGGCATTAAAACCTCAAAAAGTAAAATTTTCAT----------------------------------------------------------------------------------------------CTTTTCTGAGA-------------------------------------AAAT--CACGAT
droVir3 scaffold_12855:6904542-6904766 + CAAATAAATAA----------------ATAAA-AGTT----TATTGAGCCTCAGCTGCT--AGAACTCTTAA-----TTTTCTTTAATTTAAATAATA-----------------------------------T--------------A-------------------------------AATTA-TAAAA-----------AATTAAATAGT------------------------------------------------------------------------------------------------A-AATG-----TTTTGTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ATC-CGTTTCTTTTTTGTACATATATTTAAATATATATTTT-A-----GAAA------------------------TAATTTGTTTAATTTATTT--------------------------------ATA----------T----------------------------------------------------------------------------------------------------------------------ATATAAATGAATCTTTGAAAGCATTAATAAAAAATA----------------TATATAG--ATTTAT
droMoj3 scaffold_6500:14285140-14285327 + ACGCAATTCTCACAAATTGAAGCGATTTCAAT-TCAATTTCAA----------------------CAAAA-AA--ATGTTTAATTTATTTAAT------------------------------ATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTT---------------T-A---------------------------------TTT--------------------------------------------------------------------------------------------------------------------------ATA-ACTAGACTATTTTTAAATATTATTATTTATTAATTTATTTATT-----TAAT------------------------------------------------------------TTAATTTAAATGTCTGAT---------TA----------------------------------------------------------------------------------------------------------------ATTTAACT-----ATTCAGTGCCGAAA----------------TA-------------TATTACA--GAATTT
droGri2 scaffold_14624:3416005-3416269 + ATAAATA----------------------------AATAAATAAAATAATATGATTCTTAAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------AGTAGC----------------------------------------------------------------------------------------------------TGATCT-----GTCCTCTTCCCGTGTTAATCAAAATTCGAGTCACATCTCGATCAATTT-G------------------------------------------AACTC-------------------------------------TTTTCTCAGCATTCATGCTTTTCA---G-AATTTCAGCATTATA-ATGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTCTGTTTGTATGAGAAATTCCTTCCACTTCCCCTTTATGAGAAATTCCTTCCTTCCTTCTTG-----------------------------CACTTAAAGTAACTGTGAAA------------TATT-TA-----AGTGTTGGTTAATCA--GCAACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGAGACTCGA----------------ATAAA-TAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGT--ACTCTCTTTCAATTTAAATAATA-----------------------------------AAC-------TATTTA-------------------------------------TACTA-----------AACTAAATATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----------------------------------------------CTGTCATT------------------------CATTTGGTATTTTA-ATCGCATTCCTTCTTAACATAATAAGTTGTTTACCTATTCTTT-----AATT------------------------------------------------------------AACATTCCAATTTTCAAT---------TG----------------------------------------------------------------------------------------------------------------------ATCTTAACCTGTCTGGGAAAACCCATCAATAAGTTAGGT-------------AGCAACA--ACCGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................AACTTGAAAAAGAATGCGATTCCCTAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.......................................................TCCCTAAAAGCTGTAAGT--ACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT---------TG----------------------------------------------------------------------------------------------------------------------ATCTTAACCTGT.......................................................1811.00101000000000000000
droSec2
TAGAGACTCGA----------------ATAAA-TAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGT--ACTCTCTTTCAATTTAAATAATA-----------------------------------AAC-------TATTTAAA-----------------------------TAATAA-ACTATTTAAATAATAA-----A-------------------------------------------------------------------------------------------------------C-----TATTT-----------------------------------------------------------------------------------TAC-----------------------------------------------TCGTCATT----------------TG---G-TCATTTGGTATTTTA-ATCGCAATTCTTCTTAACATAATAAGTTGTTTACCAATTCTTT-----AATT------------------------------------------------------------AACATTCCAATTTTCAAT---------TG----------------------------------------------------------------------------------------------------------------------ATCTTAACCTGTCTGGGAAAACTCATCAATAAGTTAGGT-------------AGCAACA--AACGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................AGAATGCGATTCCCTAAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...............................A-TAAACTTGAAAAAGAATGCGATTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
dm3
TAGAGACTCGA----------------ATAAA-TAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGTAAGT--ACTCTCTTTCAGTTTAAATAATA-----------------------------------AAC-------T-------------------------------------------------------------TACCTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----------------------------------------------TTGTCATT----------------CGAAAGCAAATTTGGTAATTTA-ATCTCATTCCTTCTTAACATAATAAGTAGGTTACTTATTCT-T-----AATT------------------------------------------------------------AGCCTTCCAATTTTCATA---------TG----------------------------------------------------------------------------------------------------------------------ATCTCAACATGTCTGAGAAAACGCACCAGTAAGT---------------------------AAGGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................TAAACTTGAAAAAGAATGCGATTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26115.00150000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000211010000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000400000
............................TAAA-TAAACTTGAAAAAGAATGCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000300000
.......................................TGAAAAAGAATGCGATTCCCTAAAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010001002000000000000000000000000000000000000000000000000000000000000000000100010000200000000000000000000100000
......................................TTGAAAAAGAATGCGATTCCCTAAAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010100000
.......................................TGAAAAAGAATGCGATTCCCTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGAAAAAGAATGCGATTCCCTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AAAGAATGCGATTCCCTAAAAGCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAAACTTGAAAAAGAATGCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAACTTGAAAAAGAATGCGATTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAGAGACTCGA----------------ATAAA-TAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AAGAATGCGATTCCCTAAAAGCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................AAAAAGAATGCGATTCCCTAAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.................................TAAACTTGAAAAAGAATGCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................AGAATGCGATTCCCTAAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TA-----------------------------------AAC-------T-------------------------------------------------------------TACCTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----------------------------------------------TTGTCA...............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTTGGTAATTTA-ATCTCATT..............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATTCT-T-----AATT------------------------------------------------------------AGCCTTCCA.............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATTTGGTAATTTA-ATCT..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GAAAAAGAATGCGATTCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAAAAAGAATGCGATTCCCTAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ATGCGATTCCCTAAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAAGTAGGTTACTTATT...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGAAAAAGAATGCGATTCCCTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAAAAGAATGCGATTCCCTAAAAGCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAAAAAGAATGCGATTCCCTAAAAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACATGTCTGAGAAAACGCA..........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
........................................GAAAAAGAATGCGATTCCCTAAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAAACTTGAAAAAGAATGCGATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TTCCCTAAAAGCTGTAAGT--ACTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATAAA-TAAACTTGAAAAAGAATGCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAAAAAGAATGCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCATT----------------CGAAAGCAAATTTGGTA............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AAGAATGCGATTCCCTAAAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................................TAAACTTGAAAAAGAATGCGATTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................TTGAAAAAGAATGCGATTCCCTAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAAAAAGAATGCGATTCCCTAAAAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGAGAAAACGCACCAGT.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAGTAAGT---------------------------AAGGT.1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AA-TAAACTTGAAAAAGAATGCGATTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................TAAA-TAAACTTGAAAAAGAATGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................A-TAAACTTGAAAAAGAATGCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAAAGAATGCGATTCCCTAAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGGAGACTCGA----------------GTAAA-TACACTTGAAAAAGAATGCGATGCCCTAAGAGCTGTAAGT--ACTATCTTTAAATTAAAAAAA----------------------------------------ATTTTACAAATTT-------------------------------------TACAA-----------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTGGTAATTTA-ATCGCATTCCTCCTTTTCATAAGTAC------------CCT-T-----ATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTTC--CTTTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................AAAAGAATGCGATGCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
droYak3
TGGAGACTCGA----------------ATAAA-TAACCTTGAAAAAGAATGCAAAGGACTTACCGCTGTAAGT--ACTATCTTTAAATTAA-----TA-----------------------------------AACATTTA-----------------------------------------------------------------ACACATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC-----------------------------------------------TTATCATT----------------CG-----GAATATGATAATATATAT---AACCCTGCTTTACACGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCTTGGCT-------------AAAATTG--AACTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGCTTTACACGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA....................................2311.00100100000000
.......................................TGAAAAAGAATGCAAAGGACTTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...............................A-TAACCTTGAAAAAGAATGCAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
droEug1
TAAAGACTTAA----------------ATGAA-T---TTTAAAAGAAA-T-----------------------------C------------------TTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAACGTTGAATTGCAATTAAAATAAAAACTGTTTAAATAATA-CAAC-----CTTCAATTT---------T-ATATTGCAACAACGTACACCTTTTACAAAGAA-ATG----------------------------------------TACTCAAAATATTCAATTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TG----------------------------------------------------------------------------------------------------------------------TTTTTTTAATTGCTATAAAAACAAATAAATAAACAGATT-------------TATTATA--CCCGTTSizeHit CountTotal NormTotal
No Reads
droBia1
AATTGAAGAAA----------------TTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATTTTAA-A-----TACT------------------------------------TTTAGTA-------------------------------------------C-----------------------------------------------AAGTCTTT------------------------AAGTTCGTTTTTTT-ACCAACCTGACTGTTGATAGAATAGTTTTTTTTTT----------------------AA----------------A-------------------TAC-TTACTTTAAAATATACATTTCAAGATAAA-------------------------------------------------------------------------------------------------------------------ATCC------------ATGTTAATTTTTGTA--------------------CTCT-------------ATAAACA--ACATACSizeHit CountTotal NormTotal
No Reads
droTak1
GAAAAAATGTG----------------T------------------------TAGTCCCTTAAGAC-----------ACT------------------ATTTTAGTATTTAGT---------ATTAGACTAATGAT-------GA----------------------------------------------------------------TATTTT-------------------TA----------------------------------------------------------------------------CTGACCT-----GTTTT--------------------------------------------------------ATTTC----------------------------------------TAGTTTCATTTGTAGTTCCATTTAACTTATGATC-------------------------------------------------------------TTTGTTGTTTACCTTTTT-AGCATTTTGTG------------------------------------------------------------AACTTATAATTTTTTCCT---------TA----------------------------------------------------------------------------------------------------------------------TGCATGGTCTGTAAGAGAAAAGCAGAAAAAATGTT--GTCGTTGT-------G--GGCAGTGAAACCSizeHit CountTotal NormTotal
No Reads
droEle1
TAGAAATTAAT----------------A-------AAATCGAATAAAATTATAACTTAT--AAAATTATAAA--------------GTTTTAATTAAA-----------------------------------AAT-------TAGTAA-------------------------------------TATTA-----------A------------------------------------------ATGATATTAGAGAATTATA------------------------------------------------C-----TTGTA---------------T-G---------------------------------TTCATGAATTG--AACATTTTTAACCTATCTTAAC-----------------------------------------------GTACTATC------------------------------------------------------------TGCTGTTATTCATATTGTCTTT-----AATT----TTA----------------A-------------------TATATTTA-T-------------------------TTGACTTGTT----------------------------------------------------------------------------------------------------------------TCGTTTACT------------------------ATATAGGGTCTTT-------------AATAATG--ATTATCSizeHit CountTotal NormTotal
No Reads
droRho1
TTAAAATTTTA----------------ATAAA-TATCGTTGAGTTAAAA--AGATTCTCCAATTGTTATGAACAAAT---------------------AAATAAGTTCATCAA---------ATTAAATAACAAAA-------TAT--A-------------------------------------ATCTT-----------ACATAAATAATTT--------TAATTAACATTTATATAAACATTTTTTTAAATTATTTTTTTTATAACGCATCGAATTGCAA------AAATTACTTTTTATATAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------CC-T-----TTTT-------GATTTTTTTTTTGAACA-------------------TGC-TTTCATT---------------------------------------------------------------------------------------------------------------------ACTTTTCCACTACAAGTAGGCACA-------------------------------------------ATGCTACT-------------AGTTATA--CCCGTTSizeHit CountTotal NormTotal
No Reads
droFic1
TGGAGTCTCAA----------------ATAAT-TAACCTTAAAAAAGAATACGATTCCATAAAAGCAGTAAGT--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GATTTTTTAAA----------------AATGG-TTAA-----TATAACA--TATTTCA--------------------------TAATTTATTATATA-----------------------------------TAT-------TTTTTA-------------------------------TATTAT-ATTATTTTAATTATTT-----A-------------------------------------------------------------------------------------------------------A-----TTTTTTATTT--------------------CTTTTTTTTAATTTGTACAAATAATTG-------------------AATTTTTTTTTTGATTTTCTAG-----------------------------------------------------------------------------------------------------------GAGTATTTATTTATTTTTTT-TT-----AATG------------------------------------------------------------AATATATTTATTTTTTTT-----------------------------------------------------------------------------------------------ATTT---------GTAGAAATTATG--GCAATT-ATTTTAGATTTTCTATAAAAATTTTTGTATATTTTA----------------TATAAAA--ATAAATSizeHit CountTotal NormTotal
No Reads
droAna3
CGACTAAA----------------------------TTTTGAAAAATAATTTTTTTTCTTAAAAA------------------------------------------------------------AAA-----------------------AGTTTATTTTCAGTGTATTTTTTTTTGTGTA---------------CTATAT-----------------------------------------------------------------AGACGTTTGGTCCCAAAGAAAGTG----------------------------------------------------------------------AAATAGATATTTA-------------------AAAACCCCTTTCAACGGTGTAAAGCTC-------------------------------------TT--------------------------------------TTTA-AT----ATCTTTCTTAAT-TATAAAGTTATGAATTTTTTCATT-----AACA------------------------AAGTTTTTTTAATTTTTTG--------------------------------ACG---------TA----------------------------------------------------------------------------------------------------------------------AGCTTAAGGTATTTCAA------------AAAGTTGTAG--A--AC------AATAGTT--GCTCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................TTTGTGTA---------------CTATAT-----------------------------------------------------------------AGACGTTTGGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.153030000
...............................................................................................................................................................................TTGTGTA---------------CTATAT-----------------------------------------------------------------AGACGTTTGGTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
....................................................................................................................................................................................TA---------------CTATAT-----------------------------------------------------------------AGACGTTTGGTCCCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
..........................................................................................................................................................................................................T-----------------------------------------------------------------AGACGTTTGGTCCCAAAGAAAGTG----------------------------------------------------------------------AAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AAACCCCTTTCAACGGTGTAAAGCTC-------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
......................................................................................................................................................................................................TATAT-----------------------------------------------------------------AGACGTTTGGTCCCAAAGAAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...................................................................................................................................................................................GTA---------------CTATAT-----------------------------------------------------------------AGACGTTTGGTCCCAAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
droBip1
TAAGTATTTAA----------------ATAAA-AAAAATAGGTAACGAATGAAATAAAATA----TATCGAAT--ATTTTCTATTAATTTAAAATATAAAATTAATTTTTATTTTTTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTATTTATGTTTTCTAGAAATAACACTAATTTATTTCTTTC----------------------------------------AACTTAAATTTTTGTTTATTCTTGATTTAAA--------------------------------------CTA-ATTGTATTTATCCTTTCAATAATTAA------------TAT-T-----AT---------------------------------------------TACCTTATTT-------------------------CTGATCTGT---------------------------------------------------------------------------------------------------------------------------------CTCGTATCAGAAATAACATATTTTTTA--------TG------TGTAGGT--ACCGATSizeHit CountTotal NormTotal
No Reads
dp5
TTTAATTAATT----------------T----------------------------------------------------TATTTATTTTAACTAA--------------------------------------AT-------T-------------------------------------------------------------TATTTATTTTAATTAATTTTATTTATTTTAATTAAATCAATTTATTTTAATGGTTTTTA-----------------------------------------------------------------------------------------------------TTTATTGCACTAACTAATTATTAAC-----------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATTCC-A-----TATT-------AATTTTTTAATTATAT----------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------ATTTTCATTT-------------------------ATTT-------------AATTATA--CCCGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAAGAATGCAC----------------CTAAAATTTGTTTAAAATATAGTACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------TAAGTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-----------------------------------------------TCATTATT--------------------------TCTGGTATTTTA-CCCATATTTTTTCT-AGTACTATGTGGTTGTTACTTTTTCTGG-----TATTTTTTTCA----------------T-------------------TACTTTGATTAAATCCATACGTATACAGGCAGG-------------------------------------------------------------------------------------------------------------------CTCCGTTTTTCATTTACT------------------------TTTGAGGAT--TACGTTTT-------C--AGCCAAAACGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAAAACCTCAA----------------AAAGT-AAAATTT--------------------------------------------------------------------TCATTTTTTCTGAG-AAAAT-CAC-------------------GATTTAGTAA-AAATTATGTTTTTTTACATAGAAA-ATCGCTAAAACC-----TCAAATATTCT----------------------------------------------------------------------------------------------------CACC-----TAACCCCAACTTTGTGAACCTGTAATAGTGTCAATTTTTGACCGATTT-TTG----------------------------------------AAATT-------------------------------------------------------------------------------------------------------------AATATATCAGTTTATC-----CATC------------------------------------------------------------AGCAAATTGACTTTCAGT---------TGGCATTAAAACCTCAAAAAGTAAAATTTTCAT----------------------------------------------------------------------------------------------CTTTTCTGAGA-------------------------------------AAAT--CACGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................ACCTGTAATAGTGTCAATTTTTGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15303000
................................................................................................................................................................................................................................................................................................................................................TGTGAACCTGTAATAGTGTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
droVir3
CAAATAAATAA----------------ATAAA-AGTT----TATTGAGCCTCAGCTGCT--AGAACTCTTAA-----TTTTCTTTAATTTAAATAATA-----------------------------------T--------------A-------------------------------AATTA-TAAAA-----------AATTAAATAGT------------------------------------------------------------------------------------------------A-AATG-----TTTTGTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ATC-CGTTTCTTTTTTGTACATATATTTAAATATATATTTT-A-----GAAA------------------------TAATTTGTTTAATTTATTT--------------------------------ATA----------T----------------------------------------------------------------------------------------------------------------------ATATAAATGAATCTTTGAAAGCATTAATAAAAAATA----------------TATATAG--ATTTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ACGCAATTCTCACAAATTGAAGCGATTTCAAT-TCAATTTCAA----------------------CAAAA-AA--ATGTTTAATTTATTTAAT------------------------------ATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTT---------------T-A---------------------------------TTT--------------------------------------------------------------------------------------------------------------------------ATA-ACTAGACTATTTTTAAATATTATTATTTATTAATTTATTTATT-----TAAT------------------------------------------------------------TTAATTTAAATGTCTGAT---------TA----------------------------------------------------------------------------------------------------------------ATTTAACT-----ATTCAGTGCCGAAA----------------TA-------------TATTACA--GAATTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATAAATA----------------------------AATAAATAAAATAATATGATTCTTAAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------AGTAGC----------------------------------------------------------------------------------------------------TGATCT-----GTCCTCTTCCCGTGTTAATCAAAATTCGAGTCACATCTCGATCAATTT-G------------------------------------------AACTC-------------------------------------TTTTCTCAGCATTCATGCTTTTCA---G-AATTTCAGCATTATA-ATGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTCTGTTTGTATGAGAAATTCCTTCCACTTCCCCTTTATGAGAAATTCCTTCCTTCCTTCTTG-----------------------------CACTTAAAGTAACTGTGAAA------------TATT-TA-----AGTGTTGGTTAATCA--GCAACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:45 PM