ID:

dsi_28728

 Coordinate:

2r:5788150-5788299 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.5 -21.3 -20.8

Flybase annnotation

exon [2r_5787909_5788149_-]; CDS [2r_5787909_5788149_-]; intron [2r_5788150_5788561_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCAGATACCCATACCTTTAGGCCTCCAATCACTGCCACCAATGTTGTGTTGTGTGCCTCGTCACTTCGTCACATACTATACCTATATGTATCTTCGATTTGTGACTACTACCCGCTACAATTGATCTCCACCATCTTCACACACTTCGTGTCTCCCATGCGGCACCTCGCCCTGTGTGTTGACTTTACTAAACGAGCAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGGACG
********************************************************....(((((.(((....((((...........))))...)))...)))))............................((..((((((....(((((........))))).......))))))..)).............****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................................GCAAGGACGTCATGAGCTGGGC..... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................TTCGATTTGTGACTACTACCCT....................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGCAGACTTGAATTTAGAAGCT................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGACTTGAATTTAGAAGCT................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTAGAAGTTCGTTGAGC......................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TGAGCAAGGACGTCATGAGCTGGGC..... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CAGACTTGAATTTAGAAGCT................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCAAGGACGTCATGAGCTGGGC..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................CCTCGTCACTTCGTCACATAC............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................GTGTTGACTTTACTAAACGA...................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCAAGGACGTCATGAGC.......... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................CAGACTTGAATTTAGAAGCTCGTTGAGC......................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................TGTTGAGTGCCTCGTC........................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TGGGCAAGGACTTCATGA............ 18 2 13 0.08 1 0 0 0 0 0 0 0 1 0
...............................................TGTTGTTTGCCTCGTCAA......................................................................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................ACGTGAGCTGGGCGGA.. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GGGTCTATGGGTATGGAAATCCGGAGGTTAGTGACGGTGGTTACAACACAACACACGGAGCAGTGAAGCAGTGTATGATATGGATATACATAGAAGCTAAACACTGATGATGGGCGATGTTAACTAGAGGTGGTAGAAGTGTGTGAAGCACAGAGGGTACGCCGTGGAGCGGGACACACAACTGAAATGATTTGCTCGTCTGAACTTAAATCTTCGAGCAACTCGTTCCTGCAGTACTCGACCCGCCTGC
******************************************************....(((((.(((....((((...........))))...)))...)))))............................((..((((((....(((((........))))).......))))))..)).............******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...........................................................................................................................CTAGAGGTGGTAGAAGTGTGT.......................................................................................................... 21 0 1 1.00 1 1 0 0
....................................................................................................................................................................................ACTGAAATGATTTGTT...................................................... 16 1 3 0.33 1 0 1 0
.......................................................................................................................................................AGAGGGTACGTCGTGCAGAG............................................................................... 20 3 3 0.33 1 0 1 0
...................................................................................................................................................................................................TCGTATGAACTTAAA........................................ 15 1 20 0.10 2 0 0 2
....................................................................................................................................................CACAGAGGGTACACCG...................................................................................... 16 1 13 0.08 1 0 0 1
.........GGTATGTAAATGCGGAG................................................................................................................................................................................................................................ 17 2 17 0.06 1 0 0 1
..................................................................................................................................................................................................................TCTTCGAGAAACTCG......................... 15 1 20 0.05 1 0 0 1
.....................................................CCCGGAGCAGTGATGGAG................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1
....................................................................................................................................................................TGGTGCCGGACACACAA..................................................................... 17 2 20 0.05 1 0 0 1

Generated: 04/23/2015 at 10:50 PM