ID:

dsi_28705

 Coordinate:

3l:7365499-7365565 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7364743_7365498_+]; CDS [3l_7364743_7365498_+]; CDS [3l_7365566_7366220_+]; exon [3l_7365566_7366220_+]; intron [3l_7365499_7365565_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------##################################################
TTGATCGGTACTATGAGATTCTACAGAATGATCCCACTTTCGAGGACAGTGTAAGTTAATAAGCCGAGTTTTCTATCAGCCTATTAGAAAATATAAAACATTGAATTCCTTTTTTAGGACACCGATGGTCGCGAGAACGCACAGCGCATCTTCGATCGCGTCTCGGA
**************************************************.....(((((.......((((((((.........)))))))).......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
..........................AATGATCCGACTTTCGTG........................................................................................................................... 18 2 6 2.17 13 10 3 0 0 0 0 0 0 0 0
TTGATCGGTACTATGAGATTCTACAGA............................................................................................................................................ 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................TCTTCGATCGCGTCTCGGA 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
TTGATCGGTACTATGAGATTCTCCAGA............................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............AGATTCTACAGGACGATC...................................................................................................................................... 18 2 2 1.00 2 0 0 0 0 0 2 0 0 0 0
................................CCCACTTTCGAGGACAGT..................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................GTCTTCGATCGCGTCTCGGA 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGAACGCACAGCGCATCTTCGAT........... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................TCGAGGACAGTGTATG................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.........................CAATGATCCGACTTTCGTG........................................................................................................................... 19 3 20 0.40 8 8 0 0 0 0 0 0 0 0 0
......................CCAGAATGATCCCACT................................................................................................................................. 16 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0
........................................CGAGGACAGTGTATG................................................................................................................ 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
......................................ATCGAGGACAGTGTA.................................................................................................................. 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
......................................ATCGAGGACAGTGTATG................................................................................................................ 17 2 12 0.17 2 0 0 0 2 0 0 0 0 0 0
.......................................TCGAGGACAGTGTCA................................................................................................................. 15 1 17 0.12 2 0 0 0 2 0 0 0 0 0 0
.......................................................................................................AATTCCTGCTTTAGGAGACC............................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
....................................CCATCGAGGACAGTGTA.................................................................................................................. 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
......................ACAGATTGATCCCTCTTT............................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
.........................................GAGGACAGTGGAACTTCAT........................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0
..................................CCCGATCGAGGACAGTGT................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AACTAGCCATGATACTCTAAGATGTCTTACTAGGGTGAAAGCTCCTGTCACATTCAATTATTCGGCTCAAAAGATAGTCGGATAATCTTTTATATTTTGTAACTTAAGGAAAAAATCCTGTGGCTACCAGCGCTCTTGCGTGTCGCGTAGAAGCTAGCGCAGAGCCT
**************************************************.....(((((.......((((((((.........)))))))).......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................AAAAAATCAAGTGTCTACCAG..................................... 21 3 4 0.25 1 0 1 0 0 0
..............................................................................................................AAAAATCAAGTGTCTACCAG..................................... 20 3 11 0.18 2 0 0 2 0 0
..................AAAATGTCTTACTAAGGT................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0
......................................AAGCTTCTGTCAGATTC................................................................................................................ 17 2 7 0.14 1 0 0 0 1 0
......................TTTCTTACTAGGGTG.................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 1
.....................ATGTCTTACTAAGGT................................................................................................................................... 15 1 9 0.11 1 1 0 0 0 0
...............................AGGGTGATAGCTCCT......................................................................................................................... 15 1 11 0.09 1 1 0 0 0 0
.............................CAAGGGTGATAGCTCCT......................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0
..........................TTACTAGGCTGAAAGCACA.......................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.....................ATGTCTTACTAAGGTGGTA............................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
..................ACCATGTCTTACTAAGGT................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 06:04 AM