ID:

dsi_28678

 Coordinate:

3r:4554102-4554194 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.7 -8.7 -8.5

Flybase annnotation

exon [3r_4553756_4554101_-]; CDS [3r_4553756_4554101_-]; CDS [3r_4554195_4554282_-]; exon [3r_4554195_4554282_-]; intron [3r_4554102_4554194_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------##################################################
GGATCATCCGGTTATCATGTACAAGGAGGACTTCGTCAGCGAGGATTATGGTGAGAACAACAAAATACAGAACGTCATTGAAATCTCACATGCTCTGACCTTTTACTATGCATTTGTTTAATATGTACTATCCTTTCGTATAGATCCAACAAAAAGCGAAACCAATCCTAGTCACCACAAGAAGCATAAGCGG
**************************************************((((((....(((...((.....))..)))...))))))((((................))))..........(((((.........))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
 SRR902009
testis
.....................CAAGGAGGACTTCGTCAGC......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........GTTATCATGTACAAGGAGGAC.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................AATCTCACATGCTCTGAC.............................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............TATCATGTACAAGGAGGACTTCGTC............................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................TACAGAACGTCATCGAAA.............................................................................................................. 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................TTCGTACAGATCCAAAAAAA....................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................CGAATCCAATCCTCGTCGCCA................ 21 3 5 0.40 2 0 0 0 1 0 0 1 0 0
.......................................................................................................................................................................CAAGTCACGACAAGAAGC........ 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0
............................GACTTCGTCAGAGAGGATTGTGGC............................................................................................................................................. 24 3 5 0.20 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................CGAATCCCATCCTCGTCACCA................ 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0
.....................................AGCGAGGGTTATTGTGGGA......................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 1 0
............................................ATTATGGTGGGGACAAAAAA................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................TCCAACAAAAAACGAACC............................... 18 2 19 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCTAGTAGGCCAATAGTACATGTTCCTCCTGAAGCAGTCGCTCCTAATACCACTCTTGTTGTTTTATGTCTTGCAGTAACTTTAGAGTGTACGAGACTGGAAAATGATACGTAAACAAATTATACATGATAGGAAAGCATATCTAGGTTGTTTTTCGCTTTGGTTAGGATCAGTGGTGTTCTTCGTATTCGCC
**************************************************((((((....(((...((.....))..)))...))))))((((................))))..........(((((.........))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
....................................................................................GACTGTACGAGGCTGGATAATGA...................................................................................... 23 3 1 1.00 1 1 0 0
................................................................................TTTAAATTGTACGAGACTGGAT........................................................................................... 22 3 2 0.50 1 0 1 0
....................................................................TGTTGCAGTAACTTTA............................................................................................................. 16 1 5 0.20 1 0 0 1

Generated: 04/24/2015 at 09:42 AM