ID:

dsi_28677

Coordinate:

2r:5094223-5094372 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGAGGAACAGGCTCAGGCTAAGGCGTTTGCGGCCCATCTGAACGGAACTAGTGAGTACATATCGAAAGCCAAACAGCAGCACACACAAAGGACACACTGTCAAGGATGGAAACGTTTGCCTTTTCCTTTTTAAATACTAATATTACGATATTTTAAACCAGTTCAATCAAATCAAACCAGTTTATCAAAGGATTAGAATGCATATCTAATCACATGCATTGAAACCAAGTGTTTTAGACAATACCATGTT ************************************************........((((((...((......)).............((((...))))(((((.((.........))...))))).................)))))).........((((((((......................)))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries
......................................TGAACGGAACTAGTGAGTACA...............................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0
.........................................................................................................................................................TAAATCAGGTCAATAAAATCAA...........................................................................	22	3	5	0.40	2	0	2	0	0
.............................................................................................................................................................................................................................ATACCGAGTGTTGTAGACA..........	19	3	9	0.11	1	0	1	0	0
.............................................................................................................................................................................................................................ACACCACGTGTTGTAGAC...........	18	3	20	0.10	2	0	0	2	0
.............................................................................................................................................................................................................................AAACCGGGTGTTGTAGACA..........	19	3	11	0.09	1	0	1	0	0
...................................ATCTGCACGAGACTAGTGA....................................................................................................................................................................................................	19	3	16	0.06	1	0	0	0	1

Anti-sense strand reads

CCTCCTTGTCCGAGTCCGATTCCGCAAACGCCGGGTAGACTTGCCTTGATCACTCATGTATAGCTTTCGGTTTGTCGTCGTGTGTGTTTCCTGTGTGACAGTTCCTACCTTTGCAAACGGAAAAGGAAAAATTTATGATTATAATGCTATAAAATTTGGTCAAGTTAGTTTAGTTTGGTCAAATAGTTTCCTAATCTTACGTATAGATTAGTGTACGTAACTTTGGTTCACAAAATCTGTTATGGTACAA ************************************************........((((((...((......)).............((((...))))(((((.((.........))...))))).................)))))).........((((((((......................)))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs
....CTTGTCCGAGTCCGAGTCG...................................................................................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0	0
......................CGCCAACGCCTCGTAGACTTG...............................................................................................................................................................................................................	21	3	5	0.20	1	0	0	1	0	0
.................................AGTAGACTTGCCTTGATAA......................................................................................................................................................................................................	19	2	5	0.20	1	0	1	0	0	0
..............................................CCATCACTCAAGTATAGCT.........................................................................................................................................................................................	19	3	10	0.10	1	0	0	0	1	0
.......................................................ATGGATAGCGTTCGGTT..................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1

Generated: 04/23/2015 at 09:30 AM