ID:

dsi_2867

 Coordinate:

3l:4247887-4248160 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.2

Flybase annnotation

three_prime_UTR [3l_4247885_4247886_+]; CDS [3l_4247813_4247884_+]; exon [3l_4248161_4248839_+]; three_prime_UTR [3l_4248161_4248839_+]; exon [3l_4247813_4247886_+]; intron [3l_4247887_4248160_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGGTCCGACGGCGATGATGGCGGTCGCAAGCGTTTGAGGCGTAACTGAGTGTAAGTAGCTAGTTGAGTATGCATAATTCCTGTATCTATTAATGTAGCAATAGTTGAACTGAGTGTGTGCCGTGGTCCGAGGTAAGTAGCTGTGCAAATTCCAAACCGAAACCTTTTAGAGTTTTAAGTCAATGTGCCGAGCGTCTTTGTTGGGCCAACCTCCTGCTGCACCTGCCCTGTGCACCGGTTGGCCATCGATGTCCACGATAACCATGCCGCCCACTGAGCGCGAACATAATAAGCCAAACCCTTTTTTATCTTTCTATCTCCACAGACCCACTGACAACCAAGAACTTACAGAGAACGCAATGTACGAGTACGTAA
***************************************************************************************************************************************************************************************(((.((.((((..((((((((((((((......(((((.......)))))..))))))))...........))))))..))))))..)))......*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body
........................CGCAAGCGTTTGAGGCGTAACTG....................................................................................................................................................................................................................................................................................................................................... 23 0 1 3.00 3 2 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TCCACAGACCCACTGACAACCAAGAACT............................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................GTGCCGAGCGTCTTTGTTGGG.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.....................GGTCGCAAGCGTTTGAGGCGTAACTGA...................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................CAACCAAGAACTTACAGAGAACGCAATG............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CATGCCGCCCACTGAGCG............................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GTACCCACTGACAACCAAGAACTTACAG........................ 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0
............................AGCGTTTGAGGCGTA........................................................................................................................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.GGTCCGACGGTGATCATG................................................................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0
....................................AGGCGTAACTGATTGAA................................................................................................................................................................................................................................................................................................................................. 17 2 18 0.44 8 0 8 0 0 0 0 0 0 0
....................................AGGCGTAACTGATTGAAA................................................................................................................................................................................................................................................................................................................................ 18 2 6 0.33 2 0 2 0 0 0 0 0 0 0
......GACGGTGATCATGGAGGTCG............................................................................................................................................................................................................................................................................................................................................................ 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
.............................................................GTTGAGTATGGATTATGCCTG.................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0
....................................AGGCGTAACTGATTG................................................................................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GAGCGTATTTGTTGGG.......................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................GTGCACCGGTCGTCCATCC............................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1
......GACGGTGATCATGGAGGTC............................................................................................................................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0
............................................................................................TGCAGCAATAGTTGA........................................................................................................................................................................................................................................................................... 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAATGTGCAGGGCGTTTTT................................................................................................................................................................................ 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCCAGGCTGCCGCTACTACCGCCAGCGTTCGCAAACTCCGCATTGACTCACATTCATCGATCAACTCATACGTATTAAGGACATAGATAATTACATCGTTATCAACTTGACTCACACACGGCACCAGGCTCCATTCATCGACACGTTTAAGGTTTGGCTTTGGAAAATCTCAAAATTCAGTTACACGGCTCGCAGAAACAACCCGGTTGGAGGACGACGTGGACGGGACACGTGGCCAACCGGTAGCTACAGGTGCTATTGGTACGGCGGGTGACTCGCGCTTGTATTATTCGGTTTGGGAAAAAATAGAAAGATAGAGGTGTCTGGGTGACTGTTGGTTCTTGAATGTCTCTTGCGTTACATGCTCATGCATT
***********************************************************************************************(((.((.((((..((((((((((((((......(((((.......)))))..))))))))...........))))))..))))))..)))......*************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body
.........................................................................................................................................................................................................................................................................................................................................................ATGTCTCTTGCGTTACATGCT........ 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................CCATTCATCGACACGTTTAAGC.............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................CTTTGGCGAATCTCAAAAT...................................................................................................................................................................................................... 19 2 4 0.50 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TTGTGACTGTTAGTTCTTGAAT........................... 22 3 3 0.33 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCTTGGTGATTGTTGGGTCT................................ 20 3 4 0.25 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................................TCGGTTGGAGGACGAC............................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 1 0 0
..........................................................................................................................................................TGCCTTTGGCGAATCTCAAA........................................................................................................................................................................................................ 20 3 13 0.15 2 2 0 0 0 0 0 0
...........................................................................................................................................................GGCTTTGGCGAATCTCAA......................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0
..........................................................................................................................................................TGACTTTGGCGAATCTCAAA........................................................................................................................................................................................................ 20 3 8 0.13 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CGAAGCTACAGGTGCTAT................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1
.........................................................................................................................................................TCGGCTTTGGCGAATCTCAA......................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0
...................................................................................................................................................CAAGGTTTGGCTGTGGCAA................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 1
................................................................................................................................................................TGGAGAATCTCAAAA....................................................................................................................................................................................................... 15 1 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................GGGCTTTGGCGAATCTCAA......................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................TTTGGAGAATCTCAA......................................................................................................................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0 0
....................................TCCGCATTGACTAACTT................................................................................................................................................................................................................................................................................................................................. 17 2 18 0.06 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TCTCAAAAATCAGTT................................................................................................................................................................................................ 15 1 19 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................TTAGCTTTGGCGAATCTCAA......................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GGTGGCGCGCGCTTG.......................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4247837-4248210 + dsi_2867 GGGTCC---GACGGCGATGATGGCGGTCGCAAGCGTTTGAGGCGTAACTGAGTG-TAAGTAGC-TAGTTG-AGT-AT---GCATA---------ATTCC----TGTATC--TATTAATGTAGCAATAGTT-GA-ACT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAGAGTTTTA--------------------------------------------------------------AG-TCAA------------------TGTGCCGAG---------CGTCT-TTGT--------------TG-GG-C----------------------------CAA----CCTCC--------TGCTGC--ACCTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGATAACCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAACC-CTTTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droSec2 scaffold_2:4285559-4285926 + GGGTCC---GACGGCGATGATGGCGGTCGCAAGCGTTTGAGGCGTAACTGAGTG-TAAGTAGC-TAGTTG-AGT-AT---GCATA---------ATTCC----TGTATC--TATTAATGTAG------TT-GA-ACT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAGAGTTTTA--------------------------------------------------------------AG-TCAA------------------TGTGCCGAG---------CGTCT-TTGT--------------TG-GG-C----------------------------CAA----CCTCC--------TGCTGC--ACCTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGATACCCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAACC-CTTTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
dm3 chr3L:4285871-4286221 + GGCTCC---GACGGCGATGATGGCGGTCGCAAGCGATTGAGACGGAACTGAGTG-TAAGTAGC-TAGTTG-AGT-AT---GCATA---------AATTC----CGTATC--TATTAATGTAGCCATAATT-GA-ACT--GAG----TGTG----TGC-----CGTGGTACGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAAAACCTTTTAGCGATTTA-----------------------AG--------------------------------------A-CAATG--TGCGC--------------------------------------------------------------------------------------------------C--------TGCTGC--ACTTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGATACCCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAAAAC-----GTAA
droEre2 scaffold_4784:7002275-7002666 + GGATCC---GATGGCGATGATGGCGGTCGCAAGCGTTTAAGGCGGAATTGAGTG-TAAGTAGC-TAGTTG-AGA-AT---GCATA---------AATCC----CATATC--TATTAATGTAGCCATAGTT-GG-ACT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAACGATTTA--------------------------------------------------------------AG-TTACGCATTCGCCTAACGCTCGTGT----------GCTGAGAGCTTTTGC--------------TGGGG-C----------------------------CAA----CCTCT--------TGCTGC--ACTTGC----------------------CATGTGTACC--------GGTTGGCCATCGATATCCACGATACCCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-TTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droYak3 3L:4867458-4867851 + GGATCC---GATGGCGATGATGGCGGTCGCAAGCGTTTAAGGCGGAATTGAGTG-TAAGTAGC-CAGTTG-AGA-AT---GCATA---------ACTGC----CGTATC--TATTTATGTAGCCATAGTT-GG-ACT--GAG----TGTGT--GAGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAACAATTTA--------------------------------------------------------------AG-TTACGCATTCGCCTAACGCTCGTGT----------GCCGAGAGCTTTTGG--------------TGGGG-T----------------------------CAA----CCACT--------TGCTGC--ACTTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGTTACCCAT-----GA--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droEug1 scf7180000409466:2051357-2051740 - GGATCT---GATGGCGAAGACGGTGGACGCAAACGCTTGAGGCGCAACTGAGTG-TAAGTAGC-TAGTTA-A-A-AA---GTATA---------AATCC----CGTATC--TCTTAGTGTAGCCATAGTT-GA-GAT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAC---------CAAG-TCCCATTAACGATATA--------------------------------------------------------------AG-TTACGAATTCGCTTAACGCTTGTGT----------GCAGACAGATTATGT--------------TCGGA-C----------------------------CAA----TCGATTTG----------T--ACTTAC----------------------CCCGTGCACC--------GGTTGGCCAATGA------CGATATCTAT----TGC--CG-CCACTG-AGCGCGACCATAAT-AAG-CCAAAT--CATTTTTGTCTTTTATATCTCCACAGAC---CCACTGACAAGCA------AGAACTA-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droBia1 scf7180000302428:1003440-1003830 + GGATCC---GATGGCGATGACGGTGGACGCAAACGCCTTAGGCGCAATTGAGTG-TAAGTAGC-TAGTCG-AGA-AA---GCATA---------ATTGC----CGTATC--TACTTGTGTAGCCATTGTG-GG-AAT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAC---------CGAA-ACCTATTAACGATCTC--------------------------------------------------------------AG-TCGCGCATTCGCTTAACGCTTGTGT----------ACGGACAGTT-CTGT--------------TC-GA-C----------------------------CAA----CCGAATAGTACAGTGCTAT--ACTTAC----------------------CCCGTGCAAC--------GGTTGGCCAACGA------CGATATCTAT-----GC--CG-CCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCGCAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droTak1 scf7180000415941:118526-118887 + GGATCC---GATGGCGATGATGGAGGACGCAAACGTCTAAGGCGGAACTGAGTG-TAAGTAACCAAGTTG-AAA-AG---GCATA---------AATCC----CGTATC--TATTAATTTAGCCATAGTT-GG-A-T--GAG----TTTGT--GAGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAACCGACA--CCGAA-ACTTATTAA---------------------------------------------------------------------------CGCATTCGCCTAACGCTTTTGG------GTGTACAGACCGTT-CTGT--------------TC-GA-C----------------------------CAACCAACCGAATAGTACACT----C--ACTTAC----------------------------CAAC--------GGTTGGCCATCGA------CGA------------------------------------TATC-AAA-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGACCACCCACTGACAACCG------CGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droEle1 scf7180000491249:5163810-5164203 + GGATCC---GATGGCGATGACGGTGGACGGAAGCGATTGAGGCGTAATTGAGTG-TAAGTACC-AAGTGA-AAA-GA---GCATA---------AATCC----CGTATC--TCTTAGTGTAGCCATAGTG-GG-AATGTGAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAC---------CGAA-TCCTATTAACGATTTA--------------------------------------------------------------AA-TAAAGCATTCGCCTAACACTTGT-C----------ACAGACAGTT---GT--------------TC-G------------------GTTCGG-TTCGACCAACCAACCGAATAG----------T--ACTTAC----------------------CCCGTGCACC--------GGTTGGCCATCGA------CGATATCTAT-----GC--CG-CCACTG-AGCGCGAACATAAT-AAG-CCAAAA--CATTTTTATCTTT-CTATCTCCGCAGAC---CCACTGACAATCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droRho1 scf7180000780120:179676-180054 - GGATCC---GATGGCGATGACGTTGGACGTAAGCGGGTGCGCCGAAATTAAGTG-TAAGTACC-TAGTGG-AAAAAA---GCAAA---------AATCC----CGTATC--CTTTAATGTAGCCAAATTG-GG-AGT--AAG----TGTGT--ATGC-----CGTGGTTCGAGGTAAGTAGT----TGT--------GCAAATTCT--------------GAA-TCCTATTAATGATTTA--------------------------------------------------------------AA-TTACGCATTCGCCTAACGCTTGTGT----------GCAGACAGTT-CTGT--------------TC-GA-C----------------------------CAA----TCGATTAG----------A--ACTTAC----------------------AACGTGCACC--------GGTTGGCCATCGA------CGATATCTAT-----GC--CG-CCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droFic1 scf7180000454113:1522733-1523113 + GGATCC---GATGGCGATGACGGTGGGCGCAAACGGCTAAGGCGGAATTGAGTG-TAAGTACC-TAGTGA-AAA--AAA-ACATC----------ATCC----CGCATC--TATTAATGTAGCCATAGTG-AG-AAA--GAG----TGAG----TGC-----CGTGGTCTGAGGTAAGTAGT----TGT--------GCAAATTCCAAAA---------CGAA-ACCTATTAACGAAACC-----------------------TATT---------------------------------TAAA-TTACGCATTCGTTTAACG------------------AAGACAGTT-CTGT--------------TC-GA-C----------------------------CAA----CCGTTTAG----------T--ACTTAC----------------------CCCGTGCTCC--------GGTTGACTATCGA------CGATATTTAT-----GCCCCG-CCACTG-AGCGCGAACGTAAT-AAG-TCAAAA--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAA
droKik1 scf7180000302577:1192243-1192617 - GGCTCC---GATGGCGACGACGGAGGACGCAAGCGGCTAAGGCGGAACTGAGTGGTAAGTGCC-AT-TAGCCCTGAT---GCTAA---------CATCC----AGAATCTGTATTAATGTAGCCATAGTT-GG-AAT--GAG----TATGTTTGTGC---CGCGTGGTCCGAGGTAAGTAGT----TGT-GT-----GTAAATTCAAAAAAATAAATACCAAA-ACCATTTAACAATTTC--------------------------------------------------------------AA-AAACG------ACA----------------------AAGACAGTT--TGT--------------TC-TG-C----------------------------CCA----GAGATTAG-------TAGT--ACTTAC----------------------CCCGAGCACA--------G--TGGACCACGA------C---------------------CAACTG-A--GCGAACATAAT-AAG-CCAAGG--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACAACAACAAAGAACTA-ACAGAGAACGC--TAAGTACGAGTAC-----GAAA
droAna3 scaffold_13337:2359834-2360193 + GGTTCTGGCGACGACAATGATAATGGCCGCAAGCGTCTGAGGCGCAACTAAGCG-TAAGTACT-TTGATA-T-A-CT---GCTTG---------CATCC----CGTACC--TTTAAATTTAGCC--AGTT-GG-AAA--GTG----TGGGT-TGTGC-----CGTTGTCCGAGGTAAGTTG-------T--------TCAAATTCCAAATCAGAGA--CCC-A-A-CTATA--AGAAATA-----------------------TGC------------------------------------AA-AAACGCAAACGACTAAAGCTTGCGT----------CTAGACTTTT-TTGT--------------TT-GA-A----------------------------GAA----CCATC--------ATATGCAAA---------------------------CCTGCGCAGT------------GGCC------------------------------CG-TGGCTG-TTGGCGATCATAAT-AAG-CCTAAA--CATTTT--TCTTT-CTAT--TCACAGAC---C-GTTGACAAGAA------AGAACTA-ACAGAGAACGC--ATTGTACGAGTAC-----GAAA
droBip1 scf7180000396741:400170-400515 - GGTTCTGGCGATGACAATGATAATGGCCGCAAGCGTCTGAGGCGAAACTAAGCG-TAAGTACT-TTGTTT-A-A-CT---GCTTG---------C-------------------------ATCCTAAGGT-GG-AAA--GTG----TGGG----TAT-----CGTTGTCCGAGGTAAGTTGC----TA-----------AAATTCCAAATCA--------GAG-ACCCAAATGTGAAATG-----------------------TGCCAGTGC------------------------------AC-GTGCACATGCGACTAACGCTTGCGT----------CCAGACTTGC-TCGT--------------TT-GA-A----------------------------GTA----CCATCATG--------TTCAAA---------------------------CCTACGCACA--------G--TGGCCCA-------------------------------TGGCTG-TCGGCCAACATAAT-AAG-CCAAAA--CATTTT--TCTTT-C--TCTTCACAGAC---C-TTTGACAAGAA------AGAACTT-ACAGAGAACGC--ATTGTACGAGTAC-----GAAA
dp5 XR_group8:2298535-2298923 + GGATCA---GACGGTGACGATGGCGGCCGGAAGCGTTTGAGACGCAATTAAGTG-TAAGTATG-AACTTT-ACGA-T-ACTCAGA---------A-TTTTGCCTCGATG--TATTAATTTAGCCATAATT-GG-AAT--GAG----TGTGT-GGTGC-----CATGGTATGAGGTAAGTCGT----TAGTCT-----ATAAACTCGATTT---------TAAA-A--------CTATTGA--------------------------------------------------------------AA-TTATGCATACGCCTAACGCTTTTGT----------TCAGACAGTCT------------------------------------ACTGATTCGTATT-----------------CG----------T--ACCAA-CAC-------------------CCTGCGCACAATGGGGGGGATGGGCCATTGA------CGA------T-----GCGGTG-CCTCTG-ACTGTGAACATAAT-AAGAACAAAA--CATTTTTATCTTT-CTATTTTCACAGAC---CCACTGACAACAA----AATGAACTT-ACAGAGAACTA--TATGTACGAGTAC-----TTTA
droPer2 scaffold_24:756689-757077 - GGATCA---GACGGTGACGATGGCGGCCGGAAGCGTTTGAGACGCAATTAAGTG-TAAGTATG-AACTTT-ACGA-T-ACTCAGA---------A-TTTTGCCTCGATG--TATTAATTTAGCCATAATT-GG-AAT--GAG----TGTGT-GGTGC-----CATGGTATGAGGTAAGTCGT----TAGTCT-----ATAAACTCGATTT---------TAAA-A--------CTATTTA--------------------------------------------------------------AA-TTATGCATACGCCTAACGCTTTTGT----------TCAGACAGTCT------------------------------------ACTGATTCGTATT-----------------CG----------T--ACCAA-CAC-------------------CCTGCGCACAATGGGGGGGATGGGCCATTGA------CGA------T-----GCGGTG-CCTCTG-ACTGTGAACATAAT-AAGAACAAAA--CATTTTTATCTTT-CTATTTTCACAGAC---CCACTGACAACAA----AATGAACTT-ACAGAGAACTA--TATGTACGAGTAC-----TTTA
droWil2 scf2_1100000004949:193640-193968 - GGCTCG---GATGGCGATGATGGTGGACGGAAGCGTCTAAGACGTAACTAATTG-TAAGTATG-CTATTA-A-A-AT---TCAGA---------TATCTTGAATCTATG--CATTAATTTAGCAATAGTT-GG-ATT--GAG----TTTG----TTC-----CATGGTCCGAGGTAAGTCAG----TAC--------TCTATATCTAAAA---------TAAA-ACGTATCA-------------------------------------------------------------------------------------------CATAATC----------CCAGACAGTTT-------------------------------------------------------------------G----------A--ACTCA-GAATCAAC-CGCATTCAGCGACCCTACGCACA--------T--TGA----------------------------GT--CGATCACTG-ATCGCTAGCATAAT-AAG-CCAACCCCAATTTTTATCTTT-CTATTTTCACAGAC---TCACTGACTT----------------------AAACGTAAAATGTACGAGTAC-----TTTA
droVir3 scaffold_13049:2176644-2177037 + GGCTCA---GATGGCGATGACAGCGGCAGAAAGCGACTGCGCCGAAATTGAGTG-TAAGTATA-ACAA-T-ATAA-T-A--TTGATTCTGT--GTAT-C----TATATG--CCTTAATGTAGCCATAGTT-GG-A------G----TATG----CA------CCTGGTCCGAGGTAAGTTTTTAGTTGT----------TAGTGTTAAAT---------CGAA-AACTGTTTGCT-T--A--------------------------------------------T-----ATA---------A---CAA---ACCACACAATATATATGT----------TCAGACTGTT-CTAT--------TACAATTA-GTTACAATTACAATTACCGATC----TC-----------------TG----------T--ACTAA-AACTCAGCGCG-------------CATTCATC--------GATT------TGA------CGA------T-----CC--TG-CCATCG-ACCACGTACATAAT-AAG-CAAAAC--AATTTTTATCTTT-CTATTTCCACAGAC---CCACTGACAACAT------TGTACTTAACAGAGAACAT--TATGTACGAGTAG-----TTTA
droMoj3 scaffold_6654:1684969-1685384 - GGTTCA---GATGGTGATGATAGCGGCAGAAAGCGGTTGCGTCGCAATTAAG---TAAGTAAA-TCTTGA-ACA--GAA--TTGATTCTTC--GTATCC----TATATA--AATTAATGTAGCCATAGTTCGG-AAT--TCATCAACGGG----TG------------ATGAGGTAAGTTTTTAGCT----TGTAATACAACATTAAAAA---------AAAA-AC-TAACTGCT-T--T--------------------------------------------TGCTGCATACGAAACTCAAACTAAAAGACTCGCA-----TATTTGT----------TCAGACTGCT-CTCCGTCTTTATTACAATTA-GTTAC---------TACCGATCTGTACT-----------------T-----------A--ACTTA-AACTCTACACA-------------CATTCAGC--------GATTTG------A------C---------------------CGATC---GAACGTACATAAT-AAG-CAAAAC--AATTTTTATCTTT-CTATTTCCACAGAC---CCACTGACAACAT-----TTGTACTTAACAGAGAACAT--TATGTACGAGTAGTTTACAAAA
droGri2 scaffold_15110:3218331-3218746 + GGCTCG---GATGGTGATGATGGCGGCAGAAAGCGACTGCGTCGGAATTAAGTG-TAAGTATA-CCCCTT-ATAA-T-A-GCTGATTCTGTGTGTATCT----ACTATA--TATTAATGTAGCCATAGTT-GGAAAT--GAG----TTTT----TGAAAACGCCTGCTCCGAGGTAAGTTCT----T------------------------------------------TTAGTGTTTTAGTGATTTTTGAAAAATTGAATTGTGACAGAACAGAAAGAATATA------------------A--AGACTTA-TTGCATATAGATAT---------ATATTCAGACTG---CTAT--------------TA-GATA----------------------------CAA----CCGATTTG----------A--ACTTA-AATCCAAGGCG-------------CATTCAGC--------GATTTG------A------C--------TGCCATAA--TG-CCATCGACGATCGAACATAATAAAG-CAAAAC--CATTTTTATCTTT-CTATTTCCACAGAC---CCACTGACAACAT------TGTACTTAACAGAGAACAT-AAATGTACGAGTTA-----GT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGGTCC---GACGGCGATGATGGCGGTCGCAAGCGTTTGAGGCGTAACTGAGTG-TAAGTAGC-TAGTTG-AGT-AT---GCATA---------ATTCC----TGTATC--TATTAATGTAGCAATAGTT-GA-ACT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAGAGTTTTA--------------------------------------------------------------AG-TCAA------------------TGTGCCGAG---------CGTCT-TTGT--------------TG-GG-C----------------------------CAA----CCTCC--------TGCTGC--ACCTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGATAACCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAACC-CTTTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................CGCAAGCGTTTGAGGCGTAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300100000000002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAGAC---CCACTGACAACCA------AGAACT.....................................2811.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................GTGCCGAG---------CGTCT-TTGT--------------TG-GG-...............................................................................................................................................................................................................................................................................2111.00100000001000000000
........................GGTCGCAAGCGTTTGAGGCGTAACTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCA------AGAACTT-ACAGAGAACGC--AATG..................2811.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-----GC--CGCCCACTG-AGCG....................................................................................................................1811.00100001000000000000
...............................AGCGTTTGAGGCGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
droSec2
GGGTCC---GACGGCGATGATGGCGGTCGCAAGCGTTTGAGGCGTAACTGAGTG-TAAGTAGC-TAGTTG-AGT-AT---GCATA---------ATTCC----TGTATC--TATTAATGTAG------TT-GA-ACT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAGAGTTTTA--------------------------------------------------------------AG-TCAA------------------TGTGCCGAG---------CGTCT-TTGT--------------TG-GG-C----------------------------CAA----CCTCC--------TGCTGC--ACCTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGATACCCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAACC-CTTTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GTCC---GACGGCGATGATGGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................TTTGAGGCGTAACTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..................GATGGCGGTCGCAAGCGTTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
dm3
GGCTCC---GACGGCGATGATGGCGGTCGCAAGCGATTGAGACGGAACTGAGTG-TAAGTAGC-TAGTTG-AGT-AT---GCATA---------AATTC----CGTATC--TATTAATGTAGCCATAATT-GA-ACT--GAG----TGTG----TGC-----CGTGGTACGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAAAACCTTTTAGCGATTTA-----------------------AG--------------------------------------A-CAATG--TGCGC--------------------------------------------------------------------------------------------------C--------TGCTGC--ACTTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGATACCCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAAAAC-----GTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................ATTGAGACGGAACTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000009000000000000000100000000000000000000000000
..................................GATTGAGACGGAACTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACT--GAG----TGTG----TGC-----CGTGGTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...TCC---GACGGCGATGATGGCGGTCGCAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA------AGAACTT-ACAGAGAG...........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TG----TGC-----CGTGGTACGAGGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
..................GATGGCGGTCGCAAGCGATTGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GATGGCGGTCGCAAGCGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...TCC---GACGGCGATGATGGCGGTCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTCC---GACGGCGATGATGGCGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCGATTGAGACGGAACTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....C---GACGGCGATGATGGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................G-TAAGTAGC-TAGTTG-AGT-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................GGCGGTCGCAAGCGATTGAGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGCGGTCGCAAGCGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATGATGGCGGTCGCAAGCGATTGAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------AGAACTT-ACAGAGAACGC--AATGTAC...............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGCGGTCGCAAGCGATTGAGACGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACC--------GGTTGGCCATCGAT..........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TGTG----TGC-----CGTGGTACGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GATTGAGACGGAACTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................ATTTA-----------------------AG--------------------------------------A-CAATG--TGCGC--------------------------------------------------------------------------------------------------C--------TG............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACCA------AGAACTT-ACAGAGAACGC--......................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GGAACTGAGTG-TAAGTAGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCGGTCGCAAGCGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------AGAACTT-ACAGAGAACGC--A.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................G----TGC-----CGTGGTACGAGGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACAGAGAACGC--AATGTAC...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................TGGCGGTCGCAAGCGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCGATTGAGACGGAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................ATGATGGCGGTCGCAAGCGATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------AGAACTT-ACAGAGAACGC--AATGTACGA.............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA------AGAACTT-ACAGAGA............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GTTG-AGT-AT---GCATA---------AATTC----CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGACAACCA------AGAACTT-ACAGA..............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------AGAACTT-ACAGAGAACGC--AAT...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCA------AGAACTT-ACAGAGAACGC--AA....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................G----TGTG----TGC-----CGTGGTACGAGGTAAGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AATT-GA-ACT--GAG----TGTG----TGC-----CGTGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................GAACTGAGTG-TAAGTAGC-TAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTT-ACAGAGAACGC--AATGT.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAT-----GC--CGCCCACTG-AGCGT...................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCA------AGAACTT-ACAGAGAACGC--A.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGGTCGCAAGCGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........GACGGCGATGATGGCGGTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................ATGTAGCCATAATT-GA-ACT--GAG----TGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--CATTTTTATCTTT-CTATCTCCACAG...................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GAACTGAGTG-TAAGTAGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................GATGGCGGTCGCAAGCGATTGAGACGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGCTCC---GACGGCGATGATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGATCC---GATGGCGATGATGGCGGTCGCAAGCGTTTAAGGCGGAATTGAGTG-TAAGTAGC-TAGTTG-AGA-AT---GCATA---------AATCC----CATATC--TATTAATGTAGCCATAGTT-GG-ACT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAACGATTTA--------------------------------------------------------------AG-TTACGCATTCGCCTAACGCTCGTGT----------GCTGAGAGCTTTTGC--------------TGGGG-C----------------------------CAA----CCTCT--------TGCTGC--ACTTGC----------------------CATGTGTACC--------GGTTGGCCATCGATATCCACGATACCCAT-----GC--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-TTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....CC---GATGGCGATGATGGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
GGATCC---GATGGCGATGATGGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
droYak3
GGATCC---GATGGCGATGATGGCGGTCGCAAGCGTTTAAGGCGGAATTGAGTG-TAAGTAGC-CAGTTG-AGA-AT---GCATA---------ACTGC----CGTATC--TATTTATGTAGCCATAGTT-GG-ACT--GAG----TGTGT--GAGC-----CGTGGTCCGAGGTAAGTAGC----TGT--------GCAAATTCCAAAC---------CGAA-ACCTTTTAACAATTTA--------------------------------------------------------------AG-TTACGCATTCGCCTAACGCTCGTGT----------GCCGAGAGCTTTTGG--------------TGGGG-T----------------------------CAA----CCACT--------TGCTGC--ACTTGC----------------------CCTGTGCACC--------GGTTGGCCATCGATGTCCACGTTACCCAT-----GA--CGCCCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGC--AATGTACGAGTAC-----GT..2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------AGAACTT-ACAGAGAACGC--AATGTA................2511.00110000000000
.........................................................................................................................................................GAGC-----CGTGGTCCGAGGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................AGTT-GG-ACT--GAG----TGTGT--GAGC-----CGTGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEug1
GGATCT---GATGGCGAAGACGGTGGACGCAAACGCTTGAGGCGCAACTGAGTG-TAAGTAGC-TAGTTA-A-A-AA---GTATA---------AATCC----CGTATC--TCTTAGTGTAGCCATAGTT-GA-GAT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAC---------CAAG-TCCCATTAACGATATA--------------------------------------------------------------AG-TTACGAATTCGCTTAACGCTTGTGT----------GCAGACAGATTATGT--------------TCGGA-C----------------------------CAA----TCGATTTG----------T--ACTTAC----------------------CCCGTGCACC--------GGTTGGCCAATGA------CGATATCTAT----TGC--CG-CCACTG-AGCGCGACCATAAT-AAG-CCAAAT--CATTTTTGTCTTTTATATCTCCACAGAC---CCACTGACAAGCA------AGAACTA-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotal
No Reads
droBia1
GGATCC---GATGGCGATGACGGTGGACGCAAACGCCTTAGGCGCAATTGAGTG-TAAGTAGC-TAGTCG-AGA-AA---GCATA---------ATTGC----CGTATC--TACTTGTGTAGCCATTGTG-GG-AAT--GAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAC---------CGAA-ACCTATTAACGATCTC--------------------------------------------------------------AG-TCGCGCATTCGCTTAACGCTTGTGT----------ACGGACAGTT-CTGT--------------TC-GA-C----------------------------CAA----CCGAATAGTACAGTGCTAT--ACTTAC----------------------CCCGTGCAAC--------GGTTGGCCAACGA------CGATATCTAT-----GC--CG-CCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCGCAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotal
No Reads
droTak1
GGATCC---GATGGCGATGATGGAGGACGCAAACGTCTAAGGCGGAACTGAGTG-TAAGTAACCAAGTTG-AAA-AG---GCATA---------AATCC----CGTATC--TATTAATTTAGCCATAGTT-GG-A-T--GAG----TTTGT--GAGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAACCGACA--CCGAA-ACTTATTAA---------------------------------------------------------------------------CGCATTCGCCTAACGCTTTTGG------GTGTACAGACCGTT-CTGT--------------TC-GA-C----------------------------CAACCAACCGAATAGTACACT----C--ACTTAC----------------------------CAAC--------GGTTGGCCATCGA------CGA------------------------------------TATC-AAA-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGACCACCCACTGACAACCG------CGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotal
No Reads
droEle1
GGATCC---GATGGCGATGACGGTGGACGGAAGCGATTGAGGCGTAATTGAGTG-TAAGTACC-AAGTGA-AAA-GA---GCATA---------AATCC----CGTATC--TCTTAGTGTAGCCATAGTG-GG-AATGTGAG----TGTG----TGC-----CGTGGTCCGAGGTAAGTAGT----TGT--------GCAAATTCCAAAC---------CGAA-TCCTATTAACGATTTA--------------------------------------------------------------AA-TAAAGCATTCGCCTAACACTTGT-C----------ACAGACAGTT---GT--------------TC-G------------------GTTCGG-TTCGACCAACCAACCGAATAG----------T--ACTTAC----------------------CCCGTGCACC--------GGTTGGCCATCGA------CGATATCTAT-----GC--CG-CCACTG-AGCGCGAACATAAT-AAG-CCAAAA--CATTTTTATCTTT-CTATCTCCGCAGAC---CCACTGACAATCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotal
No Reads
droRho1
GGATCC---GATGGCGATGACGTTGGACGTAAGCGGGTGCGCCGAAATTAAGTG-TAAGTACC-TAGTGG-AAAAAA---GCAAA---------AATCC----CGTATC--CTTTAATGTAGCCAAATTG-GG-AGT--AAG----TGTGT--ATGC-----CGTGGTTCGAGGTAAGTAGT----TGT--------GCAAATTCT--------------GAA-TCCTATTAATGATTTA--------------------------------------------------------------AA-TTACGCATTCGCCTAACGCTTGTGT----------GCAGACAGTT-CTGT--------------TC-GA-C----------------------------CAA----TCGATTAG----------A--ACTTAC----------------------AACGTGCACC--------GGTTGGCCATCGA------CGATATCTAT-----GC--CG-CCACTG-AGCGCGAACATAAT-AAG-CCAAAC--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotal
No Reads
droFic1
GGATCC---GATGGCGATGACGGTGGGCGCAAACGGCTAAGGCGGAATTGAGTG-TAAGTACC-TAGTGA-AAA--AAA-ACATC----------ATCC----CGCATC--TATTAATGTAGCCATAGTG-AG-AAA--GAG----TGAG----TGC-----CGTGGTCTGAGGTAAGTAGT----TGT--------GCAAATTCCAAAA---------CGAA-ACCTATTAACGAAACC-----------------------TATT---------------------------------TAAA-TTACGCATTCGTTTAACG------------------AAGACAGTT-CTGT--------------TC-GA-C----------------------------CAA----CCGTTTAG----------T--ACTTAC----------------------CCCGTGCTCC--------GGTTGACTATCGA------CGATATTTAT-----GCCCCG-CCACTG-AGCGCGAACGTAAT-AAG-TCAAAA--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACCA------AGAACTT-ACAGAGAACGC--AATGTACGAGTAC-----GTAASizeHit CountTotal NormTotal
No Reads
droKik1
GGCTCC---GATGGCGACGACGGAGGACGCAAGCGGCTAAGGCGGAACTGAGTGGTAAGTGCC-AT-TAGCCCTGAT---GCTAA---------CATCC----AGAATCTGTATTAATGTAGCCATAGTT-GG-AAT--GAG----TATGTTTGTGC---CGCGTGGTCCGAGGTAAGTAGT----TGT-GT-----GTAAATTCAAAAAAATAAATACCAAA-ACCATTTAACAATTTC--------------------------------------------------------------AA-AAACG------ACA----------------------AAGACAGTT--TGT--------------TC-TG-C----------------------------CCA----GAGATTAG-------TAGT--ACTTAC----------------------CCCGAGCACA--------G--TGGACCACGA------C---------------------CAACTG-A--GCGAACATAAT-AAG-CCAAGG--CATTTTTATCTTT-CTATCTCCACAGAC---CCACTGACAACAACAACAAAGAACTA-ACAGAGAACGC--TAAGTACGAGTAC-----GAAASizeHit CountTotal NormTotal
No Reads
droAna3
GGTTCTGGCGACGACAATGATAATGGCCGCAAGCGTCTGAGGCGCAACTAAGCG-TAAGTACT-TTGATA-T-A-CT---GCTTG---------CATCC----CGTACC--TTTAAATTTAGCC--AGTT-GG-AAA--GTG----TGGGT-TGTGC-----CGTTGTCCGAGGTAAGTTG-------T--------TCAAATTCCAAATCAGAGA--CCC-A-A-CTATA--AGAAATA-----------------------TGC------------------------------------AA-AAACGCAAACGACTAAAGCTTGCGT----------CTAGACTTTT-TTGT--------------TT-GA-A----------------------------GAA----CCATC--------ATATGCAAA---------------------------CCTGCGCAGT------------GGCC------------------------------CG-TGGCTG-TTGGCGATCATAAT-AAG-CCTAAA--CATTTT--TCTTT-CTAT--TCACAGAC---C-GTTGACAAGAA------AGAACTA-ACAGAGAACGC--ATTGTACGAGTAC-----GAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................TGATAATGGCCGCAAGCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA-ACAGAGAACGC--ATTGTACGA.............2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGAA------AGAACTA-ACAGAGAACGC--......................2711.001000010
.....................AATGGCCGCAAGCGTCTGAGGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
GGTTCTGGCGATGACAATGATAATGGCCGCAAGCGTCTGAGGCGAAACTAAGCG-TAAGTACT-TTGTTT-A-A-CT---GCTTG---------C-------------------------ATCCTAAGGT-GG-AAA--GTG----TGGG----TAT-----CGTTGTCCGAGGTAAGTTGC----TA-----------AAATTCCAAATCA--------GAG-ACCCAAATGTGAAATG-----------------------TGCCAGTGC------------------------------AC-GTGCACATGCGACTAACGCTTGCGT----------CCAGACTTGC-TCGT--------------TT-GA-A----------------------------GTA----CCATCATG--------TTCAAA---------------------------CCTACGCACA--------G--TGGCCCA-------------------------------TGGCTG-TCGGCCAACATAAT-AAG-CCAAAA--CATTTT--TCTTT-C--TCTTCACAGAC---C-TTTGACAAGAA------AGAACTT-ACAGAGAACGC--ATTGTACGAGTAC-----GAAASizeHit CountTotal NormTotal
No Reads
dp5
GGATCA---GACGGTGACGATGGCGGCCGGAAGCGTTTGAGACGCAATTAAGTG-TAAGTATG-AACTTT-ACGA-T-ACTCAGA---------A-TTTTGCCTCGATG--TATTAATTTAGCCATAATT-GG-AAT--GAG----TGTGT-GGTGC-----CATGGTATGAGGTAAGTCGT----TAGTCT-----ATAAACTCGATTT---------TAAA-A--------CTATTGA--------------------------------------------------------------AA-TTATGCATACGCCTAACGCTTTTGT----------TCAGACAGTCT------------------------------------ACTGATTCGTATT-----------------CG----------T--ACCAA-CAC-------------------CCTGCGCACAATGGGGGGGATGGGCCATTGA------CGA------T-----GCGGTG-CCTCTG-ACTGTGAACATAAT-AAGAACAAAA--CATTTTTATCTTT-CTATTTTCACAGAC---CCACTGACAACAA----AATGAACTT-ACAGAGAACTA--TATGTACGAGTAC-----TTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGATGGGCCATTGA------CGA------T-----G.....................................................................................................................................2111.0010100000000
...............................................................................CTCAGA---------A-TTTTGCCTCGATG--T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-ACAGAGAACTA--TATGTACGAGT...........2411.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAC---CCACTGACAACA..................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AATGAACTT-ACAGAGAACT.........................2011.0010100000000
droPer2
GGATCA---GACGGTGACGATGGCGGCCGGAAGCGTTTGAGACGCAATTAAGTG-TAAGTATG-AACTTT-ACGA-T-ACTCAGA---------A-TTTTGCCTCGATG--TATTAATTTAGCCATAATT-GG-AAT--GAG----TGTGT-GGTGC-----CATGGTATGAGGTAAGTCGT----TAGTCT-----ATAAACTCGATTT---------TAAA-A--------CTATTTA--------------------------------------------------------------AA-TTATGCATACGCCTAACGCTTTTGT----------TCAGACAGTCT------------------------------------ACTGATTCGTATT-----------------CG----------T--ACCAA-CAC-------------------CCTGCGCACAATGGGGGGGATGGGCCATTGA------CGA------T-----GCGGTG-CCTCTG-ACTGTGAACATAAT-AAGAACAAAA--CATTTTTATCTTT-CTATTTTCACAGAC---CCACTGACAACAA----AATGAACTT-ACAGAGAACTA--TATGTACGAGTAC-----TTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................AATT-GG-AAT--GAG----TGTGT-GGTGT-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................................................................TT-ACGA-T-ACTCAGA---------A-TTTTGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................TTTGT----------TCAGACAGTCT------------------------------------ACTGA..............................................................................................................................................................................................................................................................2111.001010000
droWil2
GGCTCG---GATGGCGATGATGGTGGACGGAAGCGTCTAAGACGTAACTAATTG-TAAGTATG-CTATTA-A-A-AT---TCAGA---------TATCTTGAATCTATG--CATTAATTTAGCAATAGTT-GG-ATT--GAG----TTTG----TTC-----CATGGTCCGAGGTAAGTCAG----TAC--------TCTATATCTAAAA---------TAAA-ACGTATCA-------------------------------------------------------------------------------------------CATAATC----------CCAGACAGTTT-------------------------------------------------------------------G----------A--ACTCA-GAATCAAC-CGCATTCAGCGACCCTACGCACA--------T--TGA----------------------------GT--CGATCACTG-ATCGCTAGCATAAT-AAG-CCAACCCCAATTTTTATCTTT-CTATTTTCACAGAC---TCACTGACTT----------------------AAACGTAAAATGTACGAGTAC-----TTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................ATCA-------------------------------------------------------------------------------------------CATAATC----------CCAGACAGTTT-------------------------------------------------------------------G----------A--ACTC..................................................................................................................................................................................................................2811.00110000
.............................................................................................................................................G----TTTG----TTC-----CATGGTCCGAGGTAAGTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..........ATGGCGATGATGGTGGACGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
......................................................................................................................................................................................................................................................................................................................................AATC----------CCAGACAGTTT-------------------------------------------------------------------G----------A--ACTC..................................................................................................................................................................................................................2111.00100001
.....................................................................................................................................................................................................................................TCA-------------------------------------------------------------------------------------------CATAATC----------CCAGACAGTTT-------------------------------------------------------------------....................................................................................................................................................................................................................................2111.00100001
...............GATGATGGTGGACGGAAGCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................TTAGCAATAGTT-GG-ATT--GAG----T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100
......................................................................................................................................................................................................................................................................................................................................................AGACAGTTT-------------------------------------------------------------------G----------A--ACTCA-GAATCAAC-CGC....................................................................................................................................................................................................2720.50110000
..................GATGGTGGACGGAAGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTACGCACA--------T--TGA----------------------------GT--..................................................................................................................................1920.50100010
..................GATGGTGGACGGAAGCGTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100
droVir3
GGCTCA---GATGGCGATGACAGCGGCAGAAAGCGACTGCGCCGAAATTGAGTG-TAAGTATA-ACAA-T-ATAA-T-A--TTGATTCTGT--GTAT-C----TATATG--CCTTAATGTAGCCATAGTT-GG-A------G----TATG----CA------CCTGGTCCGAGGTAAGTTTTTAGTTGT----------TAGTGTTAAAT---------CGAA-AACTGTTTGCT-T--A--------------------------------------------T-----ATA---------A---CAA---ACCACACAATATATATGT----------TCAGACTGTT-CTAT--------TACAATTA-GTTACAATTACAATTACCGATC----TC-----------------TG----------T--ACTAA-AACTCAGCGCG-------------CATTCATC--------GATT------TGA------CGA------T-----CC--TG-CCATCG-ACCACGTACATAAT-AAG-CAAAAC--AATTTTTATCTTT-CTATTTCCACAGAC---CCACTGACAACAT------TGTACTTAACAGAGAACAT--TATGTACGAGTAG-----TTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................GACTGCGCCGAAATTGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................CCATAGTT-GG-A------G----TATG----CA------CCTGGTCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000010000000000000000
...................................................................A-T-ATAA-T-A--TTGATTCTGT--GTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------TG----------T--ACTAA-AACTCAGCGCG-------------C.......................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..CTCA---GATGGCGATGACAGCGGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
............GGCGATGACAGCGGCAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...TCA---GATGGCGATGACAGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................AGCGGCAGAAAGCGACTGCGCCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTAACAGAGAACAT--TATGT.................2311.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
GGTTCA---GATGGTGATGATAGCGGCAGAAAGCGGTTGCGTCGCAATTAAG---TAAGTAAA-TCTTGA-ACA--GAA--TTGATTCTTC--GTATCC----TATATA--AATTAATGTAGCCATAGTTCGG-AAT--TCATCAACGGG----TG------------ATGAGGTAAGTTTTTAGCT----TGTAATACAACATTAAAAA---------AAAA-AC-TAACTGCT-T--T--------------------------------------------TGCTGCATACGAAACTCAAACTAAAAGACTCGCA-----TATTTGT----------TCAGACTGCT-CTCCGTCTTTATTACAATTA-GTTAC---------TACCGATCTGTACT-----------------T-----------A--ACTTA-AACTCTACACA-------------CATTCAGC--------GATTTG------A------C---------------------CGATC---GAACGTACATAAT-AAG-CAAAAC--AATTTTTATCTTT-CTATTTCCACAGAC---CCACTGACAACAT-----TTGTACTTAACAGAGAACAT--TATGTACGAGTAGTTTACAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................ATTAATGTAGCCATAGTTCGG-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACAGAC---CCACTGACAACAT-----TTG.........................................2611.001100000
..................GATAGCGGCAGAAAGCGGTTGCGTCGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........................GGCAGAAAGCGGTTGCGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
GGCTCG---GATGGTGATGATGGCGGCAGAAAGCGACTGCGTCGGAATTAAGTG-TAAGTATA-CCCCTT-ATAA-T-A-GCTGATTCTGTGTGTATCT----ACTATA--TATTAATGTAGCCATAGTT-GGAAAT--GAG----TTTT----TGAAAACGCCTGCTCCGAGGTAAGTTCT----T------------------------------------------TTAGTGTTTTAGTGATTTTTGAAAAATTGAATTGTGACAGAACAGAAAGAATATA------------------A--AGACTTA-TTGCATATAGATAT---------ATATTCAGACTG---CTAT--------------TA-GATA----------------------------CAA----CCGATTTG----------A--ACTTA-AATCCAAGGCG-------------CATTCAGC--------GATTTG------A------C--------TGCCATAA--TG-CCATCGACGATCGAACATAATAAAG-CAAAAC--CATTTTTATCTTT-CTATTTCCACAGAC---CCACTGACAACAT------TGTACTTAACAGAGAACAT-AAATGTACGAGTTA-----GT--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................AAGCGACTGCGTCGGAATTAAGTA-CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101

Generated: 05/19/2015 at 04:53 AM