ID:

dsi_28661

 Coordinate:

3r:15922311-15922538 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.4 -7.1 -7.1

Flybase annnotation

three_prime_UTR [3r_15922293_15922310_+]; CDS [3r_15922188_15922292_+]; exon [3r_15922539_15923826_+]; three_prime_UTR [3r_15922539_15923826_+]; exon [3r_15922188_15922310_+]; intron [3r_15922311_15922538_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGAGCTGCGACCCCTGAAGTTCGGAAGTTAGAAAGCCAGCCGAGTTGAGGTACCTGCATTTGCTTGACATCGATTCTTACTACAAGTTTATATGAAATTAACTTAAATCAAACTAAGCGAAATTAGTTAAGCACCGAACCGACTAAGGCACTCCTATGTAAATAGCTATACAGAATTGATCTATGCCTTGGCTCTGAGTCCGTGTGGCGCCCACTTAATGCATCGTTGTACTCGCTATTTATTTTATTTTTTACACAGCGTGTTTATTTTTATAAAGCAGAAAACAATAAACTTCGGCTTCGATTTGCAATTGCCACCGCAGTGACC
**************************************************************************************************************************************************************************************.......((((...((((.((..(((.((.........)).))).)).))))))))..**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M024
male body		 M023
head
 M025
embryo
......................................................................................................................................................................................TATGCCTTGGCTCTGAGTCCGTG........................................................................................................................... 23 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TATAAAGCAGAAAACAATAAACTTCGGC............................. 28 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TATAAAGCAGAAAACAATAAACTTCGG.............................. 27 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
....................TTCGGAAGTTAGAACGCCAGCCGAGT.......................................................................................................................................................................................................................................................................................... 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCACTTAATGCATCGTTGTACTCGCTATT........................................................................................ 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TACACAGCGTGTTTATTTTTATAAAGCAGA.............................................. 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTAAATAGCTATACAGAATTGATCTA................................................................................................................................................ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATGCCTTGGCTCTGAGTCCGTGTGGCGC..................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGGCGCCCACTTAATGCATCGTTGT.................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TAAAGCAGAAAACAATAAACTTCGGC............................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTAATGCATCGTTGTACTCGCTAT......................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................AGTTAAGCACGGTATCGACTA...................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................TATACAGAATTGATCTATGCCTTGGCTC..................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTGAGTCCGTGTGGCGCCCA.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAACAATAAACTTCGGCTTCGAT....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTAAATCAAACTAAGCGAAATTA.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................AACAATAAACTTCGGCTTCGATT...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTGATCTATGCCTTGGCTCT.................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................TACACAGCGTGTTTATTTTTATAAAGC................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCACTTAATGCATCGTTGTAC................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................TAGAAAGCCAGCCGAGTT......................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................TTAAGCACCGAACCGACTAAGGCACTCC............................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AATGCATCGTTGTACTCGCTAT......................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................TAGTTCAACACCGAACCGACTAAGGC.................................................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CTATGCCTTGGCTCTGAGTCCGTG........................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TTTTATAAAGCAGAAAACAATAAACT.................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGCATCGTTGTACTCGCTATT........................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................CGGAAGTTAGAACGCCAGCCGT............................................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TTGGCTCTGAGTCCGTGTGGCGCCCA.................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................CTTGGCTCTGAGTCCGTGTGGCGT..................................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CACTTAATGCATCGTTGTACT............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................AACCGACTAAGGCACTC.............................................................................................................................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTAATGCATCGTTGTACTCGCTA.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CACTCCTATGTAAATAGCT................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................TTTTTATAAAGCAGAAAACAATAAACT.................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CAGAATTGATCTATGCCTTGGCTCTGAGTC............................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGATCTATGCCTTGGCTCTGAGTCCGTG........................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AATGCATCGTTGTACTCGCC........................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................TACAGAATTGATCTATGCCTTGGCTC..................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTAATGCATCGTTGTACTCGCTATT........................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................AGGACCGAACCGACT....................................................................................................................................................................................... 15 1 11 0.55 6 0 1 2 0 0 0 3 0 0 0 0
......................................................................................................................................................................................GATGCCTTGGCTCTGAGA................................................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................AACTTCTGAAGTTAGAAAGGC.................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................GAGGACCGAACCGACTAAT.................................................................................................................................................................................... 19 3 7 0.29 2 0 0 1 0 0 0 1 0 0 0 0
...................................................................................................................................GGACCGAACCGACTA...................................................................................................................................................................................... 15 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGGAGGACCGAACCGACTA...................................................................................................................................................................................... 19 3 14 0.21 3 0 0 1 0 0 0 2 0 0 0 0
...............................................................................................................................TTAAGCACGGTATCGACTA...................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 2 0 0 0 0
...................................................................................................................................................................TAGCTATACGGAATGGAT................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................AGGACCGAACCCACTAA..................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................AGTTAAGCACGGTATCGAC........................................................................................................................................................................................ 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TGATCTATGCCTGGG........................................................................................................................................ 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................ATTGCCACCGCCGTGA.. 16 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCCCTGTCGCGCCCACT................................................................................................................ 17 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
.......................................................................................................................................CGAACCGACTCAGGCAGT............................................................................................................................................................................... 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................AGGACCGAACCCACTAATG................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTTAAGCACGGTATCGACT....................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................ATGCCTTGGCTCTCAGA................................................................................................................................ 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................GCTAAGCACAGAACCGA......................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................AGTTGAGGACCGAACCG.......................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.........GACCCCTGGTGTTCGG............................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................CTACAGGTTTATGTGA........................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................AGGACCGAACCGACTAC..................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................GACCGAACCGACTAATGT.................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................GAGGACCGAACCGACTA...................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.......................................GCCGAGCTGGGGTACC................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TGATCTATGCCTGAGC....................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGGACCGAACCGACT....................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATGCCTTGGCGCTGAGA................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AGCTCGACGCTGGGGACTTCAAGCCTTCAATCTTTCGGTCGGCTCAACTCCATGGACGTAAACGAACTGTAGCTAAGAATGATGTTCAAATATACTTTAATTGAATTTAGTTTGATTCGCTTTAATCAATTCGTGGCTTGGCTGATTCCGTGAGGATACATTTATCGATATGTCTTAACTAGATACGGAACCGAGACTCAGGCACACCGCGGGTGAATTACGTAGCAACATGAGCGATAAATAAAATAAAAAATGTGTCGCACAAATAAAAATATTTCGTCTTTTGTTATTTGAAGCCGAAGCTAAACGTTAACGGTGGCGTCACTGG
****************************************************************************************.......((((...((((.((..(((.((.........)).))).)).))))))))..************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........CTGGGGACTTCAAGCCTTC............................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
................................................................AACTGTAGCTAAGAATGATGT................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
................................TTGCGGTCGGCTCAACTCCAT................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGTAGCAACATGAGCGATAA........................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................TCGTCTTTTGTTGTTTGAAGC............................... 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................CCGCGGGGGAATTCCGTA........................................................................................................ 18 2 2 0.50 1 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................AAAATATCTCGTCTTTT........................................... 17 1 4 0.25 1 0 0 0 0 1 0
......ACGCTGGGGGCTTCAA.................................................................................................................................................................................................................................................................................................................. 16 1 6 0.17 1 0 0 0 1 0 0
.....................................GTCGACTCAAGTCCATGAAC............................................................................................................................................................................................................................................................................... 20 3 20 0.10 2 2 0 0 0 0 0
......................................TTGGCTCGACTCCATGG................................................................................................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 1
.............................................................................................................................................................................................ACCGTGACTCAGGCAGGCC........................................................................................................................ 19 3 15 0.07 1 0 0 0 1 0 0
.....................................................................................................................................TGGCTTGACAGATTCC................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
....................AAGGCTTCAATGTGTCGGT................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1
......................................................................................................................................................................................ATACGGAACTGTGACT.................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15922261-15922588 + dsi_28661 TCGAGCTGCGACCCCTGAAGTTCGGAAGTTAGAAAG-----CCAG-CCGAGTTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---AAG-TTTA-TAT--G---------AAATTAA-------------CTTAAATCAAACTAAGCGAAATTAGT----------------------------TAAGCA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCTATACAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--CTTC----GGCTTCGATTTGCAATTG---CCACCGCAGTGACC
droSec2 scaffold_0:16790806-16791131 + TCGAACTGCGACCCCTGAAGTTCGGAAGTTAGAACG-----GCAG-CCGAGTTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---AAG-TTTA-TAT--G-----------TTTAA-------------CTTAAATCAAACTAAGCGAAATTAGT----------------------------TCAACA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCTATACAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--CTTC----GGCTTCGATTTGCAATTG---CCACCGCAGTGACC
dm3 chr3R:5090730-5091057 - TCGAACTACGACCCCTGAAGTTCGGAAGTTAGAACG-----GTAG-CCGAATTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---CAG-TTTA-TAT--G---------AAATTAG-------------CTTAAATCGAACTAAGCGATATTAGT----------------------------TTAGCA---CCGAACCGACTA---AGGCACTTCTA---TGTAAATAGCTATACAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--CTTC----GGCTTCGATTTGCAATTG---CCACCACAGTGACC
droEre2 scaffold_4770:16505342-16505666 + TCGAACTGCGACCCCTTCAGTTCGGAAGTTAGAACG-----CCAA-GAGGGTTAAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---CAG-CTTA-TAT--A---------AAGTTAG-------------CTTAAATCGAACTAAGCGAAATTAGT----------------------------TCAGTA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATACCTATACAGAATTGATCTA--TGCCT---TGGCTTTGAGT-----CCGGATGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTA---CCACCACAGTGACC
droYak3 3R:9147837-9148164 - TCGAACTGCGACCCCTTCAGTTCGGAAGTTAGAACG-----CCAG-CAGAGATGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACAAC---CAG-TTTA-TAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TCAGCA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATACCTATACAGAATTGATCTA--TGCCT---TGGCTTTGAGT-----CCGGCAGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------TG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTGCTGCCACCACAGTGACC
droEug1 scf7180000407340:9997-10324 + TTGAACTGCGACCCCTGAAATTCGGTAGTTAGAAGT-----CCAA-TAGAGCATAA-GT-A---CCTGCATTTG-CTTGACATCGATTCATACTATTAGATG-TTTA-TAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TTAGCA---CCGAACCGACTA---TGGCACTCCTA---TGTAAATAGCTATAATGGAATGATCTT--TGCCT---GGGCTCTGAGT-----CCAAGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAA----------------AC--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCACCAGAGTGACC
droBia1 scf7180000302402:7822286-7822609 - TTGAACTGCGACCCCTGCAGTTCGGCAGTTAGAACT-----CCAG-CCGAGTTGAA-GT-A---CCTGCATTTG-CTTGACATCGATTCACATTAC----AG-TTTA-TAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TCAGCA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCTATAATGAATTGATCTA--CGCCT---GGGCTCTGAGC-----TCAAGTGGCG-----CCCACTTAATGCATCGTTTT--ACTCGCTATTTAT-----------TTTA--TTTTTTACGC----------------AC--TCTGTTTACTT-TTATAAAGCAGAAAACAATAAA--C-------GCCTTCGATTTGCAATTG---CCAACGCAGTGACC
droTak1 scf7180000415364:30971-31282 + TTGAGCTGCGACCCCTGCAGTTCGGCAGTTAGAACT-----CCAG-CCGAGTTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTAATAC----AG-TTTA-AAC--G---------AAGTTAG-------------CTTAAATCGAACTAAG------------------------------------------CA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCAATAATGAATTGATCTATATACCT---GGGCTCTGAGC-----CCCAGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACGC----------------AC--TGTGTTTATTT-TTATAAAACAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCAACGCAGTGACC
droEle1 scf7180000491194:247457-247776 - TTGAACTGCGACCCCTGCAGTTTGGCAGTTAGAACT-----GCTA-AGGAGTTAGGAGG-A---CTGGCATTTG-CTTGACATCGATTCTTACTAC----AG-TTTA-AAC--G---------ACATTAG-------------CTTAGATCGAACTAAGCGAGCTTAGT----------------------------TTAGCA---CCGAACCGACTA---GGGCACTCCTT---TGTAAATAGCTATAATGAATTGATCTA--TGCCT---GGGCTCTGAGC-----CCCAGTGGCG-----ACCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC-----AC---------ACCGCGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATT------------GTGACC
droRho1 scf7180000779488:305453-305767 - TTGAACTACGACCCCTGCAGTTTGGCAGTTAGAGCT-----GCGG-TGGAGTGGAA-AG-A---CTTGCATTTG-CTTGACATCGATTCTTAACAC----AG-TTAA-AAC--G---------ACATTAG-------------CCTAAATCGAACTAAGCGATATTAGT----------------------------TCAGCA---CCGAACCTACTA---AGGCACTCCTA---TGTAAATAGCTATAATGAATTGATCTA--TGCCT---GGGCATTGAGC-----CCTAATGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AC--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATT------------GTGACC
droFic1 scf7180000454106:2086864-2087187 + TCGAATTGCGACCCTTAAAGTTCGGCAGTTAGAACT-----TCAT-CGGGGTTGAG-GG-A---CCTGCATTTG-CTTGACATCGATTCTTACTAG----AG-TTAA-AAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TCAGCA---CCGAACCGACTA---AGGATCTCCTA---TGTAAATAGCAAAAATGAATTGATCTT--CGGCT---GGGCTCTGAGT-----CCGAGTGGCG-----TCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AC--CGTGTTTACTT-TTATAAAGCAGAAAATAATAAA--C-------GGCTTCGATTTGCAATTG---CCAGCACAGTGACC
droKik1 scf7180000301923:177561-177870 + TTGAGCTGCGACCCCTGAACTTTGGCAGTTAAAACT-----CTAA-TGGAGTTGAA-GTGACCGCCGGCATTTT-CTTGACAACGATTAA-----------C-TTTACTCT---------------GTCG-------------CTTAAATCGAACTAAGTGCGATTAGT----------------------------TCAGCA-------------------GGGACTCCTA---TGTACATAGCTCTAATGAATTGATCTA--TGCCG---TGGCTCTGAGC-----CCGGATGGCA-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTAA-TATTTTACAC-----AA---------AC--GGTGTTTATTTTTTATAAAGCTGA-AACAATAAATAT-------GCCTTCGATTCGCAATCG---CAGCCACAGTGACC
droAna3 scaffold_13340:14452826-14453162 + TTGAACTGCGACCTCTGCAGTTCGGCAGCTAAAAGGGAGCTCTCACCTACGCTGAG-TG-A---CCTGCATTTG-CTTGACATCGATTGA-ATTAAAAGAAT-TTTG-TAT--G---------AAATTAG-------------CTTAAAGCGAACTAAGTAAGATTAGT----------------------------TCAATA---TCGAGCCGGTTA---AAGCACTCCTA---TGTATATAGTTCTTATGAATTGATCTG--TGCCGGGGTGGCTCTGAGC-----CCAATTGGCG-----CCCACTTAATGCTTCATTGT--ACTCGCTATTTAT-----------TTTAA-TTTTTTACAC----------------AC--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCACCGCAGTGACC
droBip1 scf7180000395971:717327-717654 - TTGAACTGCGACCTTTGCAGTTCGGCAGTTAAAAGT-----CTTA-CTACGCTGAG-TT-A---CCTGCATTTGAATTGACATCGATTTAAATAAA----TGTTTTT-TAT--G---------AAATTAG-------------CTTAAATCGAACTAAGGGCTGTTAGT----------------------------TCATTA---TCGAGCCGATTA---AAGCACTCCTA---TGTATATAGTTCTAATGAATCGATCTG--TGCCG--GTGGCTATGAGC-----CCAATTGGCG-----CCCACTTAATGCTTCAATGT--ACTCGCTATTTAT-----------TTTAA-TTTTTTACAC----------------AC--TGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCACCGCAGTGACC
dp5 2:66776-67075 - TTGAGCTGCGGCCCCTGAAATGCGGCAGCTAGAAACG----CCCG-AAGAGTTTGGTTG-A---TATGCATTTG-CTTGACGC-GACGACGGCTGC---CTG-------GT--G---------CGCTTGG-------------CTTGTCACAAATTACA------TAGT----------------------------TCGGCCCATCCGACCCGATCC---C--TACTCCCA---TGTACATAACTGCAATGAATTGATCTA--TGCCA---CAGCTCAGAGCTAAGCTCGTGTTGCA------CCACTTAATA-----TTGTACACTCGCTATTTAT-----------TTCAACTTTTTTACAC----------------AC--T------------------GCAGCAAACAATAAA--CTTCAGTAAGCTTCGAATTACGAAT------------GTAACC
droPer2 scaffold_7:2858594-2858893 - TTGAGCTGCGGCCCCTGAAATGCGGCAGCTAGAAACG----CACG-AAGAGTTTGGTTG-A---TATGCATTTG-CTTGACGC-GACGACGGCTGC---CTG-------GT--G---------CGCTTGG-------------CTTGTCACAAATTACA------TAGT----------------------------TCGGCCCATCCGACCCGATCC---C--TACTCCCA---TGTACATAACTGCAATGAATTGATCTA--TGCCA---CGGCTCAGAGCTAAGCTCGTGTTGCA------CCACTTAATA-----TTGTACACTCGCTATTTAT-----------TTCAACTTTTTTACAC----------------AC--T------------------GCAGCAAACAATAAA--CTTCAGTAAGCTTCGAATTACGAAT------------GTAACC
droWil2 scf2_1100000004943:12529061-12529407 - ATGAAATTCGTCCACTGAAATTTGGCAGTTAGAACT-----A---------------------------------TTTGACGCAAACTCTTATTTC---CTA-------AAGCAGGTACTTTATAATTGGACATCATTTCTGTAGTAAATCTATCTATGCGATATTGAATATATCGATTCAATCTTTTTGGCAATACTCGGCA---CAATTCCGATTATAAAGTAACTACCATTATGTA--------------------------------------------------TAAATGGAACAAGTCAAGCTTGAAGCTTCGATGA--ACTCGCTATATGTAAATTTAAATATTTA--TTTTTTTTACCATGCAAAAATGTACAAT--TTTGTTTACTA-TCACAGGCTGCAAAAAAATAAATGTTTT----GGCTTCAATTTTCAATTG---TAACGA--CTGACC
droVir3 scaffold_12855:1210395-1210428 - TTGAGATCAGATCGCTGAAATTTGGCAGTTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:26956827-26956864 - TTGAGATCAGAGCTCTGAAATTTGGAAGCTAGAGCC-----AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14624:3796857-3796889 - TTGAGATCAGAGCTCTAAAGTTCAGCAGCTAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGAGCTGCGACCCCTGAAGTTCGGAAGTTAGAAAG-----CCAG-CCGAGTTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---AAG-TTTA-TAT--G---------AAATTAA-------------CTTAAATCAAACTAAGCGAAATTAGT----------------------------TAAGCA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCTATACAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--CTTC----GGCTTCGATTTGCAATTG---CCACCGCAGTGACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTCTGAGT-----CCGTG...........................................................................................................................................................................2315.00500000041000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGCAGAAAACAATAAA--CTTC----GGC................................2815.00500000032000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGCAGAAAACAATAAA--CTTC----GG.................................2714.00400000013000000000
................................................................................................................................................................................................................................................................................................................CCACTTAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................2912.00200000011000000000
........................................................................................................................................................................................................................................................................................................................................................................TACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGA.......................................................3012.00200000020000000000
...........................................................................................................................................................................................................................................TGTAAATAGCTATACAGAATTGATCTA--........................................................................................................................................................................................................2712.00200000001001000000
.....................................................................................................................................................................................................................................................................A--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----C................................................................................................................................................................2811.00100000000001000000
.....................................................................................................................................................................................................................................................................................................TGGCG-----CCCACTTAATGCATCGTTGT--...........................................................................................................................................2511.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCAGAAAACAATAAA--CTTC----GGC................................2611.00100000001000000000
....................................................................................................................................................................................................................................................................................................................TTAATGCATCGTTGT--ACTCGCTAT..................................................................................................................................2411.00100000000000001000
.....................................................................................................................................................................................................................................................TATACAGAATTGATCTA--TGCCT---TGGCTC..........................................................................................................................................................................................2811.00100000001000000000
....................................................................................................................................................................................................................................................................................TCTGAGT-----CCGTGTGGCG-----CCCA.............................................................................................................................................................2111.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAACAATAAA--CTTC----GGCTTCGAT..........................2311.00100000010000000000
................................................................................................................................................TTAAATCAAACTAAGCGAAATTA.........................................................................................................................................................................................................................................................................................................2311.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAAA--CTTC----GGCTTCGATT.........................2311.00100000010000000000
.............................................................................................................................................................................................................................................................ATTGATCTA--TGCCT---TGGCTCT.........................................................................................................................................................................................2111.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................TACAC----------------AG--CGTGTTTATTT-TTATAAAGC..........................................................2711.00100000000001000000
................................................................................................................................................................................................................................................................................................................CCACTTAATGCATCGTTGT--AC.........................................................................................................................................2111.00100000000000001000
.............................TAGAAAG-----CCAG-CCGAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
........................................................................................................................................................................T----------------------------TAAGCA---CCGAACCGACTA---AGGCACTCC..........................................................................................................................................................................................................................................2811.00100000000001000000
......................................................................................................................................................................................................................................................................................................................AATGCATCGTTGT--ACTCGCTAT..................................................................................................................................2211.00100000000000010000
...................................................................................................................................................................................................................................................................CTA--TGCCT---TGGCTCTGAGT-----CCGTG...........................................................................................................................................................................2411.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TT-TTATAAAGCAGAAAACAATAAA--CT.........................................2611.00100000010000000000
........................................................................................................................................................................................................................................................................................................................TGCATCGTTGT--ACTCGCTATT.................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................T---TGGCTCTGAGT-----CCGTGTGGCG-----CCCA.............................................................................................................................................................2611.00100000000010000000
...........................................................................................................................................................................................................................................................................CT---TGGCTCTGAGT-----CCGTGTGGCG-----T................................................................................................................................................................2411.00100000000000010000
.................................................................................................................................................................................................................................................................................................................CACTTAATGCATCGTTGT--ACT........................................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................AACCGACTA---AGGCACTC...........................................................................................................................................................................................................................................1711.00100000000001000000
....................................................................................................................................................................................................................................................................................................................TTAATGCATCGTTGT--ACTCGCTA...................................................................................................................................2311.00100000010000000000
................................................................................................................................................................................................................................CACTCCTA---TGTAAATAGCT..........................................................................................................................................................................................................................1911.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTT-TTATAAAGCAGAAAACAATAAA--CT.........................................2711.00100000001000000000
.........................................................................................................................................................................................................................................................CAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----C...............................................................................................................................................................................3011.00100000010000000000
..............................................................................................................................................................................................................................................................TTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTG...........................................................................................................................................................................2911.00100000001000000000
......................................................................................................................................................................................................................................................................................................................AATGCATCGTTGT--ACTCGCC....................................................................................................................................2011.00110000000000000000
.......................................................................................................................................................................................................................................................TACAGAATTGATCTA--TGCCT---TGGCTC..........................................................................................................................................................................................2611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................TTAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................2511.00100000000000010000
droSec2
TCGAACTGCGACCCCTGAAGTTCGGAAGTTAGAACG-----GCAG-CCGAGTTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---AAG-TTTA-TAT--G-----------TTTAA-------------CTTAAATCAAACTAAGCGAAATTAGT----------------------------TCAACA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCTATACAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--CTTC----GGCTTCGATTTGCAATTG---CCACCGCAGTGACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................TCCTA---TGTAAATAGCTATACAGAAT.................................................................................................................................................................................................................2511.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC----GGCTTCGATTTGCAA....................1911.0010010
..................................................................TGCATTTG-CTTGACATCGATT........................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................................................................................................TTAT-----------TTTA--TTTTTTACAC----------------AG--CGTG...........................................................................2411.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAATTG---CCACCGCAGT....2111.0010010
............................TTAGAACG-----GCAG-CCGAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.................................................................................................................G-----------TTTAA-------------CTTAAATCAAACTAAGCGAA.............................................................................................................................................................................................................................................................................................................2611.0010010
............CCCTGAAGTTCGGAAGTTAGAACG-----GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...........................................AG-CCGAGTTGAG-GT-A---CCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
TCGAACTACGACCCCTGAAGTTCGGAAGTTAGAACG-----GTAG-CCGAATTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---CAG-TTTA-TAT--G---------AAATTAG-------------CTTAAATCGAACTAAGCGATATTAGT----------------------------TTAGCA---CCGAACCGACTA---AGGCACTTCTA---TGTAAATAGCTATACAGAATTGATCTA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--CTTC----GGCTTCGATTTGCAATTG---CCACCACAGTGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................TAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................24155.0055000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000142342600000000000000020001000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................25138.0038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151601500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................ACTTAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................27126.002600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040301800000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CTTAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................26116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005030700000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CT---TGGCTCTGAGT-----CCGTGTGGCG-----CC...............................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CT---TGGCTCTGAGT-----CCGTGTGGCG-----C................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATAAA--CTTC----GGCTTCGATTTGC......................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GATCTA--TGCCT---TGGCTCTGAGT-----CC..............................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTAT-----------TTTA--TTTTTTACAC----------------AG--CGTG...........................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATTGAG-GT-A---CCTGCATTTG-CTT..................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TACAC----------------AG--CGTGTTTATTT-TTATAAAGC..........................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
................................................................................................................................................TTAAATCGAACTAAGCGATATTAGT----------------------------...........................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAATGCATCGTTGT--ACTCGCT....................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................AG--CGTGTTTATTT-TTATAAAGC..........................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGCAGAAAACAATAAA--CTTC----G..................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................AGAACG-----GTAG-CCGAATTGAG-GT-....................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................CACTTAATGCATCGTTGT--ACTCGCTATT.................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAACAATAAA--CTTC----GGCTTCGATTTGCA.....................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGGCTCTGAGT-----CCGTGTGGCG-----C................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCTA--TGCCT---TGGCTCTGAGT-----CCGTGT..........................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000110000000
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----C................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTCTGAGT-----CCGTGTGGCG-----CC...............................................................................................................................................................3013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AATGCATCGTTGT--ACTCGCTATT.................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCTA--TGCCT---TGGCTCTGAGT-----CCGTG...........................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAAA--CTTC----GGCTTCGATTTGC......................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TATACAGAATTGATCTA--TGCCT---TGGC............................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TGAGT-----CCGTGTGGCG-----CCCACTTAATGC.....................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................A--CTTC----GGCTTCGATTTGCAATTG---CCACCA........2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TA---TGTAAATAGCTATACAGAATTGA..............................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AACTACGACCCCTGAAGTTCGGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CGAACTAAGCGATATTAGT----------------------------...........................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTCTGAGT-----CCG.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACGACCCCTGAAGTTCGGAAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TGAG-GT-A---CCTGCATTTG-CT...................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AT-----------TTTA--TTTTTTACAC----------------AG--CGTG...........................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TAG-CCGAATTGAG-GT-A---CCTG............................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTA--TTTTTTACAC----------------AG--CGTGTTTAT......................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................ATGCATCGTTGT--ACTCGCT....................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CCT---TGGCTCTGAGT-----CCGTGTGGCG-----C................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAA--CTTC----GGCTTCGATTTGCAAA...................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TATTT-TTATAAAGCAGAAAACAATAAA--C..........................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTT.........................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATAAA--CTTC----GGCTTCGATTTGCA.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TACAGAATTGATCTA--TGCCT---TGGCTCT.........................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................TTCTA---TGTAAATAGCTATACAGA...................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTTCGGAAGTTAGAACG-----GTAG-CC................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000
............................................................................................................................................................................................................................................................................................................................................................................C----------------AG--CGTGTTTATTT-TTATAAAGCAGA.......................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................TG-CTTGACATCGATTCTTAC...................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCGAACTGCGACCCCTTCAGTTCGGAAGTTAGAACG-----CCAA-GAGGGTTAAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACTAC---CAG-CTTA-TAT--A---------AAGTTAG-------------CTTAAATCGAACTAAGCGAAATTAGT----------------------------TCAGTA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATACCTATACAGAATTGATCTA--TGCCT---TGGCTTTGAGT-----CCGGATGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTA---CCACCACAGTGACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................GCCT---TGGCTTTGAGT-----CCGGATGGC.......................................................................................................................................................................24126.002600000026
................................................................................................................................................................................................................................................................................................................CCACTTAATGCATCGTTGT--ACTCGCT....................................................................................................................................2612.0020010010
..................................CG-----CCAA-GAGGGTTAAG-GT-A---CC..............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000110
................................................................................................................................................................................................................................................................GATCTA--TGCCT---TGGCTTTGAGT-----CCG.............................................................................................................................................................................2511.0010000100
.............................................................................................................................................................................................................................................................ATTGATCTA--TGCCT---TGGCT...........................................................................................................................................................................................1911.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTT-TTATAAAGCAGAAA.....................................................2211.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTT-TTATAAAGCAGAAAACA..................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................G-----CCCACTTAATGCATCGTTGT--ACT........................................................................................................................................2411.0010000100
.....................................................................................................................................................................................................TCAGTA---CCGAACCGACTA---AGGC...............................................................................................................................................................................................................................................2211.0010100000
...............................................................................................................................................CTTAAATCGAACTAAGCGA..............................................................................................................................................................................................................................................................................................................1911.0010000100
..........................................................................................................................................................................................................A---CCGAACCGACTA---AGGCACTCCTA---T....................................................................................................................................................................................................................................2511.0011000000
..........................................CAA-GAGGGTTAAG-GT-A---CCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
...................................G-----CCAA-GAGGGTTAAG-GT-A---CCTG............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................................................................AATGCATCGTTGT--ACTCG......................................................................................................................................1811.0010000010
............................................................................................................................................................................................................................................................................................................................................ATTTAT-----------TTTA--TTTTTTACAC----------------AG--CGT............................................................................2511.0010000010
......................................................................................................................................................................AGT----------------------------TCAGTA---CCGAACCGACTA---A..................................................................................................................................................................................................................................................2211.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAAA--C-------GGCTTCGATTTGCAAA...................2611.0011000000
....................................................TAAG-GT-A---CCTGCATTTG-CTT..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
................................................................................................................................................................................................................................................................................................................................................AT-----------TTTA--TTTTTTACAC----------------AG--CGTG...........................................................................2211.0010000010
..................................CG-----CCAA-GAGGGTTAAG-GT-A---CCTG............................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
............................................................................................................................................................................................................................................................................T---TGGCTTTGAGT-----CCGGATGGCG-----C................................................................................................................................................................2311.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................T-TTATAAAGCAGAAAACAATAAA--C-------GGC................................2711.0011000000
.....................................................................................................................................................................................................................................................................................................................TAATGCATCGTTGT--ACTCGCTA...................................................................................................................................2211.0011000000
.............................................................................................................................GTTAG-------------CTTAAATCGAACTA...................................................................................................................................................................................................................................................................................................................1911.0011000000
.................................ACG-----CCAA-GAGGGTTAAG-GT-A---CCTGCATT........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..................................CG-----CCAA-GAGGGTTAAG-GT-....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAAA--C-------GGCTTCGATTT........................2111.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATAAA--C-------GGCTTCGATTTGC......................2011.0010000010
.................................ACG-----CCAA-GAGGGTTAAG-GT-A---CCTG............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTTTGAGT-----CCG.............................................................................................................................................................................2111.0010000010
......................................................................................................................................................................AGT----------------------------TCAGTA---CCGAACCGACTA---AGG................................................................................................................................................................................................................................................2411.0011000000
..........................AGTTAGAACG-----CCAA-GAGGGTTAAG-GT-....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.....................................................................................................................................................................................................................................................................................................................TAATGCATCGTTGT--ACTCGCT....................................................................................................................................2111.0010000100
................................................................................................................................................TTAAATCGAACTAAGCGAAATT..........................................................................................................................................................................................................................................................................................................2211.0010000100
............................................................................................................................................................................................................................................GTAAATACCTATACAGAATTGAT.............................................................................................................................................................................................................2311.0010000010
............................................................A---CCTGCATTTG-CTTGACATCG...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................................................................................................................................................................................................................................ATACCTATACAGAATTGATC............................................................................................................................................................................................................2011.0010000010
........................................................................................................................................................................................................................................................ACAGAATTGATCTA--TGCCT---TGGCTT..........................................................................................................................................................................................2511.0010000010
...................................................................................................................................................................................................................................................CCTATACAGAATTGATCTA--........................................................................................................................................................................................................1911.0010000010
.................CAGTTCGGAAGTTAGAACG-----CCAA-GA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTTTGAGT-----................................................................................................................................................................................1811.0010000010
................................................................................................................................................TTAAATCGAACTAAGCGAAATTA.........................................................................................................................................................................................................................................................................................................2311.0010000100
TCGAACTGCGACCCCTTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..................................CG-----CCAA-GAGGGTTAAG-GT-A---CCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
TCGAACTGCGACCCCTTCAGTTCGGAAGTTAGAACG-----CCAG-CAGAGATGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTACAAC---CAG-TTTA-TAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TCAGCA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATACCTATACAGAATTGATCTA--TGCCT---TGGCTTTGAGT-----CCGGCAGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------TG--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTGCTGCCACCACAGTGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................CTA--TGCCT---TGGCTTTGAGT-----CC..............................................................................................................................................................................2111.00101000000000
................................................................................................................................................TTAAATCGAACTAAGCGAGATT..........................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................ATTCTTACAAC---CAG-TTTA-TAC--G---------A....................................................................................................................................................................................................................................................................................................................................................2311.00100001000000
.....CTGCGACCCCTTCAGTTCGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
............................TTAGAACG-----CCAG-CAGAGATGAG-.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
..............................................................................................................................................................GCGAGATTAGT----------------------------TCAGCA---CCGAACCGAC........................................................................................................................................................................................................................................................2711.00100100000000
....................................................................................................................................................................................................................................................................TA--TGCCT---TGGCTTTGAGT-----C...............................................................................................................................................................................1911.00100100000000
................................................................................................................................................................................................................GAACCGACTA---AGGCACTCCTA---TGT..................................................................................................................................................................................................................................2411.00101000000000
.........................................................GT-A---CCTGCATTTG-CTTGACATC............................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAACAATAAA--C-------GGCTTCGATTTGCA.....................2811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA--C-------GGCTTCGATTTGCA.....................2011.00101000000000
..GAACTGCGACCCCTTCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................AAGTTAGAACG-----CCAG-CAGAGATGAG-G......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
................................................................................................................................................................................................................................................................................TGGCTTTGAGT-----CCGGCAGGCG-----C................................................................................................................................................................2211.00100000010000
..................................................................................................................................................................GATTAGT----------------------------TCAGCA---CCGAACCGACTA---AG.................................................................................................................................................................................................................................................2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAACAATAAA--C-------GGCTTCGAT..........................2311.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--C-------GGCTTCGATTTGCAATTGCTGC.............2711.00101000000000
..............................................................................GACATCGATTCTTACAAC---CAG-C........................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.................................................................................................................................................................................................................................................................................GGCTTTGAGT-----CCGGCAGGC.......................................................................................................................................................................1911.00100100000000
...............................................................................................................................................................................................................................................AATACCTATACAGAATTGATCTA--TGC.....................................................................................................................................................................................................2611.00110000000000
.....CTGCGACCCCTTCAGTTCGGAAGTTAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
droEug1
TTGAACTGCGACCCCTGAAATTCGGTAGTTAGAAGT-----CCAA-TAGAGCATAA-GT-A---CCTGCATTTG-CTTGACATCGATTCATACTATTAGATG-TTTA-TAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TTAGCA---CCGAACCGACTA---TGGCACTCCTA---TGTAAATAGCTATAATGGAATGATCTT--TGCCT---GGGCTCTGAGT-----CCAAGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAA----------------AC--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCACCAGAGTGACCSizeHit CountTotal NormTotal
No Reads
droBia1
TTGAACTGCGACCCCTGCAGTTCGGCAGTTAGAACT-----CCAG-CCGAGTTGAA-GT-A---CCTGCATTTG-CTTGACATCGATTCACATTAC----AG-TTTA-TAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TCAGCA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCTATAATGAATTGATCTA--CGCCT---GGGCTCTGAGC-----TCAAGTGGCG-----CCCACTTAATGCATCGTTTT--ACTCGCTATTTAT-----------TTTA--TTTTTTACGC----------------AC--TCTGTTTACTT-TTATAAAGCAGAAAACAATAAA--C-------GCCTTCGATTTGCAATTG---CCAACGCAGTGACCSizeHit CountTotal NormTotal
No Reads
droTak1
TTGAGCTGCGACCCCTGCAGTTCGGCAGTTAGAACT-----CCAG-CCGAGTTGAG-GT-A---CCTGCATTTG-CTTGACATCGATTCTTAATAC----AG-TTTA-AAC--G---------AAGTTAG-------------CTTAAATCGAACTAAG------------------------------------------CA---CCGAACCGACTA---AGGCACTCCTA---TGTAAATAGCAATAATGAATTGATCTATATACCT---GGGCTCTGAGC-----CCCAGTGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACGC----------------AC--TGTGTTTATTT-TTATAAAACAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCAACGCAGTGACCSizeHit CountTotal NormTotal
No Reads
droEle1
TTGAACTGCGACCCCTGCAGTTTGGCAGTTAGAACT-----GCTA-AGGAGTTAGGAGG-A---CTGGCATTTG-CTTGACATCGATTCTTACTAC----AG-TTTA-AAC--G---------ACATTAG-------------CTTAGATCGAACTAAGCGAGCTTAGT----------------------------TTAGCA---CCGAACCGACTA---GGGCACTCCTT---TGTAAATAGCTATAATGAATTGATCTA--TGCCT---GGGCTCTGAGC-----CCCAGTGGCG-----ACCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC-----AC---------ACCGCGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATT------------GTGACCSizeHit CountTotal NormTotal
No Reads
droRho1
TTGAACTACGACCCCTGCAGTTTGGCAGTTAGAGCT-----GCGG-TGGAGTGGAA-AG-A---CTTGCATTTG-CTTGACATCGATTCTTAACAC----AG-TTAA-AAC--G---------ACATTAG-------------CCTAAATCGAACTAAGCGATATTAGT----------------------------TCAGCA---CCGAACCTACTA---AGGCACTCCTA---TGTAAATAGCTATAATGAATTGATCTA--TGCCT---GGGCATTGAGC-----CCTAATGGCG-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AC--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATT------------GTGACCSizeHit CountTotal NormTotal
No Reads
droFic1
TCGAATTGCGACCCTTAAAGTTCGGCAGTTAGAACT-----TCAT-CGGGGTTGAG-GG-A---CCTGCATTTG-CTTGACATCGATTCTTACTAG----AG-TTAA-AAC--G---------AAATTAG-------------CTTAAATCGAACTAAGCGAGATTAGT----------------------------TCAGCA---CCGAACCGACTA---AGGATCTCCTA---TGTAAATAGCAAAAATGAATTGATCTT--CGGCT---GGGCTCTGAGT-----CCGAGTGGCG-----TCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTA--TTTTTTACAC----------------AC--CGTGTTTACTT-TTATAAAGCAGAAAATAATAAA--C-------GGCTTCGATTTGCAATTG---CCAGCACAGTGACCSizeHit CountTotal NormTotal
No Reads
droKik1
TTGAGCTGCGACCCCTGAACTTTGGCAGTTAAAACT-----CTAA-TGGAGTTGAA-GTGACCGCCGGCATTTT-CTTGACAACGATTAA-----------C-TTTACTCT---------------GTCG-------------CTTAAATCGAACTAAGTGCGATTAGT----------------------------TCAGCA-------------------GGGACTCCTA---TGTACATAGCTCTAATGAATTGATCTA--TGCCG---TGGCTCTGAGC-----CCGGATGGCA-----CCCACTTAATGCATCGTTGT--ACTCGCTATTTAT-----------TTTAA-TATTTTACAC-----AA---------AC--GGTGTTTATTTTTTATAAAGCTGA-AACAATAAATAT-------GCCTTCGATTCGCAATCG---CAGCCACAGTGACCSizeHit CountTotal NormTotal
No Reads
droAna3
TTGAACTGCGACCTCTGCAGTTCGGCAGCTAAAAGGGAGCTCTCACCTACGCTGAG-TG-A---CCTGCATTTG-CTTGACATCGATTGA-ATTAAAAGAAT-TTTG-TAT--G---------AAATTAG-------------CTTAAAGCGAACTAAGTAAGATTAGT----------------------------TCAATA---TCGAGCCGGTTA---AAGCACTCCTA---TGTATATAGTTCTTATGAATTGATCTG--TGCCGGGGTGGCTCTGAGC-----CCAATTGGCG-----CCCACTTAATGCTTCATTGT--ACTCGCTATTTAT-----------TTTAA-TTTTTTACAC----------------AC--CGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCACCGCAGTGACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................CGGCAGCTAAAAGGGAGCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................................................GCACTCCTA---TGTATATAGTT..........................................................................................................................................................................................................................2011.001001000
.......GCGACCTCTGCAGTTCGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................TTATGAATTGATCTG--TGCCGGGGT...............................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................G-----CCCACTTAATGCTTCATTGT--ACTCGC.....................................................................................................................................2711.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAACAATAAA--C-------GGCTTCGA...........................1911.001010000
............................................ACCTACGCTGAG-TG-A---CCTGCATTTG-CTT..................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.........................................................................................................................................................................................................................................................................................................G-----CCCACTTAATGCTTCATTGT--ACTC.......................................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAAACAATAAA--C-------GGCTTCGAT..........................2611.001001000
...................................................................................................................................................................................................................................................GTTCTTATGAATTGATCTG--TGCCGG..................................................................................................................................................................................................2511.001010000
......................................................................................................................................................................................................CAATA---TCGAGCCGGTTA---AAGCA..............................................................................................................................................................................................................................................2211.001010000
...................GTTCGGCAGCTAAAAGGGAGCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................G-----CCCACTTAATGCTTCATTGT--ACTCGCT....................................................................................................................................2811.001010000
..........................AGCTAAAAGGGAGCTCTCACCTACGC............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................AAGAAT-TTTG-TAT--G---------AAATTAG-------------C................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................AGGGAGCTCTCACCTACGC............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................TTAAAGCGAACTAAGTAAGATTA.........................................................................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATAAA--C-------GGCTTCGATTTGC......................2011.001001000
.......GCGACCTCTGCAGTTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................TGAGC-----CCAATTGGCG-----CCCACTTAATGCT....................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................TCTG--TGCCGGGGTGGCTCTGAGC-----CCAA............................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................ATTGATCTG--TGCCGGGGTGGCT...........................................................................................................................................................................................2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAACAATAAA--C-------GGCTTC.............................2011.001010000
droBip1
TTGAACTGCGACCTTTGCAGTTCGGCAGTTAAAAGT-----CTTA-CTACGCTGAG-TT-A---CCTGCATTTGAATTGACATCGATTTAAATAAA----TGTTTTT-TAT--G---------AAATTAG-------------CTTAAATCGAACTAAGGGCTGTTAGT----------------------------TCATTA---TCGAGCCGATTA---AAGCACTCCTA---TGTATATAGTTCTAATGAATCGATCTG--TGCCG--GTGGCTATGAGC-----CCAATTGGCG-----CCCACTTAATGCTTCAATGT--ACTCGCTATTTAT-----------TTTAA-TTTTTTACAC----------------AC--TGTGTTTATTT-TTATAAAGCAGAAAACAATAAA--C-------GGCTTCGATTTGCAATTG---CCACCGCAGTGACCSizeHit CountTotal NormTotal
No Reads
dp5
TTGAGCTGCGGCCCCTGAAATGCGGCAGCTAGAAACG----CCCG-AAGAGTTTGGTTG-A---TATGCATTTG-CTTGACGC-GACGACGGCTGC---CTG-------GT--G---------CGCTTGG-------------CTTGTCACAAATTACA------TAGT----------------------------TCGGCCCATCCGACCCGATCC---C--TACTCCCA---TGTACATAACTGCAATGAATTGATCTA--TGCCA---CAGCTCAGAGCTAAGCTCGTGTTGCA------CCACTTAATA-----TTGTACACTCGCTATTTAT-----------TTCAACTTTTTTACAC----------------AC--T------------------GCAGCAAACAATAAA--CTTCAGTAAGCTTCGAATTACGAAT------------GTAACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................GGCTGC---CTG-------GT--G---------CGCTTGG-------------.................................................................................................................................................................................................................................................................................................................................1912.0020200000000
.....................................................................................................................................................................................................................................CCA---TGTACATAACTGCAATGA...................................................................................................................................................................................................................2112.0020200000000
...............................................................................................................................................................................................................................................................................................................................................TAT-----------TTCAACTTTTTTACAC----------------AC--T------------------GCAG........................................................2612.0020000000200
........................................................................................................................................................................................................................................................................................AGCTAAGCTCGTGTTGCA------CC..............................................................................................................................................................2011.0010100000000
.....................................................................................................................................................ACAAATTACA------TAGT----------------------------TCGGCCC....................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA--CTTCAGTAAGCTTCGAA..........................2211.0010010000000
.........................................................................................................................................................................................................................................................................................GCTAAGCTCGTGTTGCA------CC..............................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................TTGCA------CCACTTAATA-----TTGTACACTCGC.....................................................................................................................................2711.0010000000100
........................................................................................................................................................AATTACA------TAGT----------------------------TCGGCCCATCCGACC............................................................................................................................................................................................................................................................2611.0010100000000
............................................G-AAGAGTTTGGTTG-A---TATGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......GCGGCCCCTGAAATGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................CA------CCACTTAATA-----TTGTACACT........................................................................................................................................2111.0010010000000
........................................................................................................................................................................................................................................................AATGAATTGATCTA--TGCCA---CAGC............................................................................................................................................................................................2311.0010010000000
.................................................................ATGCATTTG-CTTGACGC-GA..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......GCGGCCCCTGAAATGCGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................A-----TTGTACACTCGCTATTTAT-----------TTC................................................................................................................2311.0010000100000
....................................................................................................................................................................................................................................................................................................................TTAATA-----TTGTACACTCGCT....................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................GCTAAGCTCGTGTTGCA------CCACTT..........................................................................................................................................................2311.0010100000000
droPer2
TTGAGCTGCGGCCCCTGAAATGCGGCAGCTAGAAACG----CACG-AAGAGTTTGGTTG-A---TATGCATTTG-CTTGACGC-GACGACGGCTGC---CTG-------GT--G---------CGCTTGG-------------CTTGTCACAAATTACA------TAGT----------------------------TCGGCCCATCCGACCCGATCC---C--TACTCCCA---TGTACATAACTGCAATGAATTGATCTA--TGCCA---CGGCTCAGAGCTAAGCTCGTGTTGCA------CCACTTAATA-----TTGTACACTCGCTATTTAT-----------TTCAACTTTTTTACAC----------------AC--T------------------GCAGCAAACAATAAA--CTTCAGTAAGCTTCGAATTACGAAT------------GTAACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................TACA------TAGT----------------------------TCGGCCCATCC................................................................................................................................................................................................................................................................1913.003300000
..................................................GTTTGGTTG-A---TATGCATTTG-CTTGAC...............................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
............................................................................................................................................................ACA------TAGT----------------------------TCGGCCCATCCGACCCGAT........................................................................................................................................................................................................................................................2611.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAACAATAAA--CTTCAGTAAGCTTCGAAA.........................2811.001001000
........................................................................................................................................................AATTACA------TAGT----------------------------TCGGCCCA...................................................................................................................................................................................................................................................................1911.001001000
................GAAATGCGGCAGCTAGAAACG----C......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................TAGAAACG----CACG-AAGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.......................................................................................................................................................AAATTACA------TAGT----------------------------TCGGCC.....................................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................................................................................................................................TTTTTTACAC----------------AC--T------------------GCAGCA......................................................1911.001010000
..............................AGAAACG----CACG-AAGAGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.............................................................................................................................................................................................................................................................ATTGATCTA--TGCCA---CGGCTC..........................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--CTTCAGTAAGCTTCGA...........................1911.001100000
droWil2
ATGAAATTCGTCCACTGAAATTTGGCAGTTAGAACT-----A---------------------------------TTTGACGCAAACTCTTATTTC---CTA-------AAGCAGGTACTTTATAATTGGACATCATTTCTGTAGTAAATCTATCTATGCGATATTGAATATATCGATTCAATCTTTTTGGCAATACTCGGCA---CAATTCCGATTATAAAGTAACTACCATTATGTA--------------------------------------------------TAAATGGAACAAGTCAAGCTTGAAGCTTCGATGA--ACTCGCTATATGTAAATTTAAATATTTA--TTTTTTTTACCATGCAAAAATGTACAAT--TTTGTTTACTA-TCACAGGCTGCAAAAAAATAAATGTTTT----GGCTTCAATTTTCAATTG---TAACGA--CTGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................TATGTA--------------------------------------------------TAAATGGAACAAGTCAAGCT...........................................................................................................................................................2612.00220000
.............................................................................................................................ATTGGACATCATTTCTGTAGT..............................................................................................................................................................................................................................................................................................................................2112.00200020
............................................................................TTGACGCAAACTCTTATTTC---CT...........................................................................................................................................................................................................................................................................................................................................................................2212.00220000
..........................................................................................................................................................................................................................................ATGTA--------------------------------------------------TAAATGGAACAAGT.................................................................................................................................................................1912.00200020
........................................................................................................................................TTTCTGTAGTAAATCTATCTATGCGATA............................................................................................................................................................................................................................................................................................................2811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................T--TTTGTTTACTA-TCACAGGCTGC........................................................2311.00100010
..................................................................................................................................................................................................................................................................................................................GCTTGAAGCTTCGATGA--ACTCGCTAT..................................................................................................................................2611.00100010
..................................................................................................................GGTACTTTATAATTGGACATC.........................................................................................................................................................................................................................................................................................................................................2111.00110000
..................................................................................................................................................................................................................................................................................................AAATGGAACAAGTCAAGCTTGAAGC.....................................................................................................................................................2511.00100010
...................................................................................................CTA-------AAGCAGGTACTTTATAAT.................................................................................................................................................................................................................................................................................................................................................2111.00100010
..........................................................................................................................ATAATTGGACATCATTTCTGT.................................................................................................................................................................................................................................................................................................................................2111.00110000
........................................................................................................................................................................ATATATCGATTCAATCTTTTTGGC................................................................................................................................................................................................................................................................................2411.00100010
....................................................................................................................................................................................................................................................................................................................TTGAAGCTTCGATGA--ACTCGC.....................................................................................................................................2111.00110000
..................................................................................................................................................................................................................................................................................................................GCTTGAAGCTTCGATGA--ACTCG......................................................................................................................................2211.00100100
.....ATTCGTCCACTGAAATTTGGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTTACTA-TCACAGGCTGCAAA.....................................................2311.00100010
..........................................................................................................................................................................ATATCGATTCAATCTTTTTGGC................................................................................................................................................................................................................................................................................2211.00100010
.............................................................................................................................ATTGGACATCATTTCTGT.................................................................................................................................................................................................................................................................................................................................1811.00100010
................................................................................................................................................................................ATTCAATCTTTTTGGCAATACTCGGCA---C.................................................................................................................................................................................................................................................................2811.00100010
..........................................................................................................................................................................................................................................................................................................................CTTCGATGA--ACTCGCTATATGTAAAT..........................................................................................................................2611.00100010
.................................................................................................................................................................................................ATACTCGGCA---CAATTCCGAT........................................................................................................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................A---CAATTCCGATTATAAAGT................................................................................................................................................................................................................................................1911.00100010
........................................................................................CTTATTTC---CTA-------AAGCAGGT...........................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................................................................................................................................................TATGTA--------------------------------------------------TAAATGGAACAAGTCA...............................................................................................................................................................2211.00100010
................................AACT-----A---------------------------------TTTGACGCAAACTCTTATTTC---CT...........................................................................................................................................................................................................................................................................................................................................................................2811.00110000
droVir3
TTGAGATCAGATCGCTGAAATTTGGCAGTTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
TTGAGATCAGATCGCTGAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
....GATCAGATCGCTGAAATTTGGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
TTGAGATCAGAGCTCTGAAATTTGGAAGCTAGAGCC-----AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............CTGAAATTTGGAAGCTAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
TTGAGATCAGAGCTCTAAAGTTCAGCAGCTAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:32 PM