ID:

dsi_28651

 Coordinate:

3l:7364390-7364474 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7364272_7364389_+]; CDS [3l_7364272_7364389_+]; CDS [3l_7364475_7364686_+]; exon [3l_7364475_7364686_+]; intron [3l_7364390_7364474_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------##################################################
CATCTACCAGGGTCGCGTTCTGGTCGATGATAAGCAGGTGAAGGAATATGGTGAGTCATGTCCCCCGGGAGCACCTCCATATATATATATATATATGCACTTATATCTAATACAACAATATCAATGCCTATGCAGATGTGGATGGCAAGGTGCTCCATGTGGCCGAACGACCACCATTCTCGCAG
**************************************************.((((.(((((......(((.......((((((((....))))))))........)))......))).......)).))...)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
CATCTACCAGGGTCGCGTTCTGGTC................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0
........AGGGTCGCGTTCTGGTCGAT............................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................................................................TGCAGATGTGGATGGCAAGGTGCTCCA............................ 27 0 1 1.00 1 0 0 1 0 0 0 0
.ATCTACCAGGGTCGCGTTCT.................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...............................AAGAATGTGAAGGAGTATGGTG.................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................ATGCGGATAGCAAGGTGC................................ 18 2 2 0.50 1 0 0 0 0 1 0 0
..............................TAAGAAGGTGAAGGAATTGGGTG.................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 1 0
..............................................................CCCCGGTAGAACCTCCA.......................................................................................................... 17 2 5 0.20 1 0 0 0 0 1 0 0
............................................................TCTCCCGGTAGGACCTCCA.......................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1
.......................................GAAGTAATATGTTGAGT................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 1
...............................................................CCCGGTAGAACCTCCA.......................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
........................................................................................ATATATAGGCACTGATA................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

GTAGATGGTCCCAGCGCAAGACCAGCTACTATTCGTCCACTTCCTTATACCACTCAGTACAGGGGGCCCTCGTGGAGGTATATATATATATATATACGTGAATATAGATTATGTTGTTATAGTTACGGATACGTCTACACCTACCGTTCCACGAGGTACACCGGCTTGCTGGTGGTAAGAGCGTC
**************************************************.((((.(((((......(((.......((((((((....))))))))........)))......))).......)).))...)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
..................................................................................................................................................................GGCTTGCTGGTGGTAAGAGCG.. 21 0 1 1.00 1 1 0 0 0
..................................................................................................................TGTTATAGTAACGGAT....................................................... 16 1 5 0.20 1 0 1 0 0
...............GCAAGACCAGCTACGA.......................................................................................................................................................... 16 1 5 0.20 1 0 0 1 0
...................................................................CCTCGTGGAGGTTTAAAT.................................................................................................... 18 2 7 0.14 1 0 1 0 0
.....TCGTCCCAGCGCTAAACCAG................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1
........................................................................................................TAGAGGAGGTTGTTATAGTT............................................................. 20 3 17 0.06 1 1 0 0 0

Generated: 04/24/2015 at 05:58 AM