dsi_2865

exon [2r_7083572_7083699_-]; CDS [2r_7083572_7083654_-]; CDS [2r_7083572_7083654_-]; exon [2r_7083135_7083509_-]; CDS [2r_7083135_7083509_-]; CDS [2r_7083135_7083509_-]; exon [2r_7083135_7083509_-]; exon [2r_7083572_7083697_-]; intron [2r_7083510_7083571_-]; intron [2r_7083510_7083571_-]

##################################################--------------------------------------------------------------################################################## GCCGACACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAACCCTTTTCCTCTGATCGAATCTCACCAATTCTCCCTCGGATCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACGCCCGTCTGCACCA ************************************************........................(((((..((((.......))))....))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	M024 male body	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	M023 head	SRR553487 NRT_0-2 hours eggs
...................................................................CTTTTCCTCTGATCGAATCTC..........................................................................	21	0	1	3.00	3	0	3	0	0	0	0	0	0
......................................................................................TCACCAATTCTCCCTCGGATCGCCAGC.................................................	27	0	2	1.00	2	2	0	0	0	0	0	0	0
...GACACAACCAGGGGGCCCATT..........................................................................................................................................	21	1	2	1.00	2	0	0	0	0	2	0	0	0
.................................................................CCCTTTTCCTCTGATCGAATC............................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................TAAATTCCACGAGTGGCAGGG......................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................TTTCCTCTGATCGAATCTCAC........................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
............TACAGGCCCATTAAATTCCACGAG..............................................................................................................................	24	3	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................CTCGGATCGCCAGCTGGGTGG..........................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0
............................................................................................................................CTTCTCTCACCCCGCCG.....................	17	0	2	0.50	1	0	0	0	1	0	0	0	0
.............................................................................................................................................ACTTCACGCCCGTCTGCAC..	19	0	2	0.50	1	0	0	0	0	0	0	1	0
....................................................................................................TCGGATCGCCAGCTGGG.............................................	17	0	2	0.50	1	1	0	0	0	0	0	0	0
....................................TGGCAGGGCAACTCGTAAGTG.........................................................................................................	21	0	2	0.50	1	0	0	0	0	0	1	0	0
......................................................................................TCACCAATTCTCCCTCGGATCGCCAG..................................................	26	0	2	0.50	1	1	0	0	0	0	0	0	0
...............................ACGAGTGGCAGGGCA....................................................................................................................	15	0	2	0.50	1	0	0	0	1	0	0	0	0
.................................................................................................CCCTCGGATCGCCAGCTGGG.............................................	20	0	2	0.50	1	0	0	1	0	0	0	0	0
....................................................................................................TCGGATCGCCAGCTGGGTGGTGCTC.....................................	25	0	2	0.50	1	1	0	0	0	0	0	0	0
.....................................................................................................CGGATCGCCAGCTGGGTGGTGT.......................................	22	1	2	0.50	1	0	0	0	0	0	0	0	1
................................................................................................................CTGGGTGGTGCTCTTCTC................................	18	0	2	0.50	1	0	0	1	0	0	0	0	0
...................................................................................................CTCAGATCGCCAGCT................................................	15	1	14	0.14	2	2	0	0	0	0	0	0	0
............................................................................................ATTCTCCCTCGGACC.......................................................	15	1	8	0.13	1	0	0	0	1	0	0	0	0
..........................................................................TCTGATCGAAGCTCTCCTAT....................................................................	20	3	9	0.11	1	0	0	0	1	0	0	0	0
.........................AATTCCACCACTGGCAGG.......................................................................................................................	18	2	10	0.10	1	0	0	0	1	0	0	0	0
.....................................................................................................CGGATCGCCACCTGTGT............................................	17	2	16	0.06	1	0	0	0	1	0	0	0	0
..............................................................................................................................TCTCTCACCCCGACCA....................	16	2	20	0.05	1	0	0	0	0	0	1	0	0
..............................................................................................TCTCCTTGGGATCGCCA...................................................	17	2	20	0.05	1	0	0	0	0	0	1	0	0
.........................AATTCCACGTGTAGCA.........................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0

CGGCTGTGTTGGTTCCCCGGGTAATTTAAGGTGCTCACCGTCCCGTTGAGCATTCACGGTAGTTTGGGAAAAGGAGACTAGCTTAGAGTGGTTAAGAGGGAGCCTAGCGGTCGACCCACCACGAGAAGAGAGTGGGGCGGCTGAAGTGCGGGCAGACGTGGT ************************************************........................(((((..((((.......))))....))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	M023 head	O001 Testis	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs
.................CGGGTAATTTAAGGTGCTCAC............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................GGGAAAAGGAGACTA..................................................................................	15	0	2	1.00	2	0	0	2	0	0	0	0	0	0	0
................TCGGGTAATTTAAGGTGCTCACC...........................................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................GAAAAGGAGACTAGCTTAGAG..........................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................CGGGTAATTTAAGGTGCTCA.............................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................AGTGGGGCGGCTGAAGTGCGG...........	21	0	2	1.00	2	0	0	0	0	2	0	0	0	0	0
.........................................................................GAGGCTAGCTTAGAGTGGTT.....................................................................	20	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................GTTAAGAGGGAGCCTAGCGGT...................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
..................................................................................TTAGAGTGGTTAAGAGGGAGC...........................................................	21	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................TGAGTGGTTAAGAGGGAGC...........................................................	19	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................GAAGAGAGGGGGGCGGCGG...................	19	2	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.............................................................ATTTGGGTACAGGAGACTAGC................................................................................	21	3	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................GCTGAAGTGGGGTCAG.......	16	2	20	0.15	3	0	0	3	0	0	0	0	0	0	0
.......................................................................................GTGGGTAAGACCGAGCCTAG.......................................................	20	3	7	0.14	1	0	0	0	0	0	1	0	0	0	0
................CCGGGTCACTTTAGGTGCTC..............................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................CGACCCCCCAAGAGACGAGA...............................	20	3	11	0.09	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................TGGGGCGGCTGAGGT...............	15	1	17	0.06	1	0	0	0	0	0	0	0	0	0	1
.................CGGGTTATTTAGGGTGCCC..............................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0
................................................................................................AGGGGGCCTAGAGGTCG.................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................AAAGAAGGAGCCTAGC......................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:7083460-7083621 -	dsi_2865	GCCGA-CACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CCCTTTTCCTC--------------TGATCG--AA--------TC-------------------TCA-CCAATTCTCC----------------------------------------------------------------C-TCGGA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACGCCCGTCTGCACCA
droSec2	scaffold_1:3919362-3919523 +		GCCGA-CACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CCCTTTTTCTC--------------TGATCG--AA--------TC-------------------TCA-CCAATTCTCC----------------------------------------------------------------C-TCGGA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACGCCCGTCTGCACCA
dm3	chr2R:6312070-6312231 +		GCCGA-CACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CCCTTTTTCTC--------------TGATCG--AA--------TC-------------------TTA-CCAATTCTCC----------------------------------------------------------------T-TCGGA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACTCCCGTCTGCACCA
droEre2	scaffold_4929:8065491-8065650 +		GCCGA-CACAACCAAGGGGCCCATCAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CC-TCTTTCTG--------------TAATCA--AA--------TC-------------------TCA-CCAATCCTCT----------------------------------------------------------------C-T-ATA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACTCCCGTCTGCACCA
droYak3	v2_chr2L_random_004:760-920 -		GCCGA-CACAACCAAGGGGCCCATCAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TAATCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGGGTGGTGCTCTTCTCCCACCCCGCCGACTTCACACCCGTCTGCACCA
droEug1	scf7180000409672:4702829-4702991 +		GCCGA-CACCACCAAGGGGCCAATCAGCTTCCACGAGTGGCAGGGCAATTCGTAAGTTCCATTTGG---------------------------------------------------------GTTACTTTTTT--------------CATCCG--AT--------AC-------------------TCATCTAGTTCTCC----------------------------------------------------------------C-TCTGA--------TCCCCAGGTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACTCCCGTTTGCACAA
droBia1	scf7180000301506:4553-4711 -		GCCGA-CACCACCAAGGGGCCCATCAGCTTCCACGAGTGGCAGGGCAACTCGTAAGTCAAAA--CA----------------------------------------------------------CCAC-TCCTCT-------------CGATCG--AT--------AC-------------------TCATCCTGCTATTA----------------------------------------------------------------C-TCCCA--------TC-CCAGGTGGGTGGTGCTCTTCTCCCACCCCGCCGACTTCACCCCCGTGTGCACCA
droTak1	scf7180000415683:153802-153975 -		GCCGACCACCACCAAGGGACCCATCAGCTTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAGA---------------------------------------------------------CCA-GCTTCCC--------------CAGTT-TC-----------CCAATG-------------CTCATCCAGTTCTCC----------------------------------------------------------------C-TCCGATCCCCGG-TCCTCAGGTGGGTGGTGCTCTTCTCCCACCCCGCCGACTTCACCCCCGTCTGCACCA
droEle1	scf7180000491349:1150015-1150183 +		GCCGA-CACCACCAAGGGGCCCATCAGCTTCCACGAGTGGCAGGGCAATTCGTAAGTGCCTTTGAA---------------------------------------------------------AACATTTTCTC--------------CGGTCG--TT--------ACTCATC-------------CTCATCCAATCCTCC----------------------------------------------------------------G-TGTGA--------TCCTCAGGTGGGTGGTGCTCTTTTCCCACCCCGCCGACTTCACGCCCGTGTGCACCA
droRho1	scf7180000779262:57543-57704 +		GCCGA-CACCACCAAGGGGCCCATCAGCTTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCCAG---------------------------------------------------------ACCACTTTCTC--------------CGGTCG--AT--------GC-------------------TCATCCAATCCTC-----------------------------------------------------------------C-CCTAT--------TCCACAGGTGGGTTGTGCTCTTCTCCCACCCCGCCGACTTCACCCCCGTGTGCACCA
droFic1	scf7180000454066:1387679-1387841 -		GCCGA-CACCACCAAGGGACCCATCAAGTTCCACGAGTGGCAGGGCAACTCGTAAGTGCTACCTAT----------TAC--------------------------------------------CCCACACTCCC--------------TATCCC--GT--------AC-------------------TCATCCAATACT--------------------------------------------------------------------TCCAA--------CCTTCAGCTGGGTGGTGCTCTTCTCGCACCCCGCCGACTTCACACCCGTCTGCACAA
droKik1	scf7180000302817:645122-645289 -		GCCGA-GACCACCAAGGGCCCCATCAACTTCCACGAGTGGCAGGGCAACCAGTAAGTAGACCCCAC-----------------------------------------------------TGAACTCTCTT-------------------A------AGGCTCTTGGGC-------------------TCATACGATCCCTC--------------------------------------------------------------TCC-TCCGG--------TCCCCAGGTGGGTGGTGCTCTTCTCGCACCCCGCTGACTTCACGCCGGTGTGCACCA
droAna3	scaffold_13266:4767161-4767323 -		GCCGA-CACCACCAAGGGCCCCATCAACTTCCACGAGTGGCAGGGCAAATCGTAAGTAGATCC-------------------------------------------------CTCGTCCT--AGTG--------C---CAGACAT-----------TG--------TC-------------------TCA-TTGGTGCA----------------------------------------------------------------TCCTCCCGA--------TCTACAGGTGGGTGGTGCTCTTCTCCCACCCCGCTGACTTCACGCCCGTGTGCACCA
droBip1	scf7180000395751:577544-577707 +		GCCGC-CACCACCAAGGGCCCCATCAACTTCCACGAGTGGCAGGGCAACTCGTAAGTAGATCC-------------------------------------------------CTCCTCCTTAAATC--------T-------------CAGAGG--AG--------AC-------------------TCA-TGTGTTCATC----------------------------------------------------------------TTCACAA--------TCAACAGGTGGGTGGTGCTCTTCTCCCACCCCGCTGACTTCACCCCAGTGTGCACTA
dp5	3:7141715-7141873 +		GCCGA-CACCACCAAGGGGCCGATCAACTTCCACGAATGGCAGGGAAACTCGTGAGTTGCATCCAA---------ATCGCATTCATTTCCACTCCCACTAAATACCGAATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTAGATGGGTGGTTCTGTTCTCGCATCCGGCCGATTTCACGCCCGTGTGCACCA
droPer2	scaffold_2:7341161-7341319 +		GCCGA-CACCACCAAGGGGCCGATCAACTTCCACGAATGGCAGGGAAACTCGTGAGTTGCATCCAA---------ATCGCATTCATTTCCACTCCCACTAAATACCGAATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTAGATGGGTGGTTCTGTTCTCGCATCCGGCCGATTTCACGCCCGTCTGCACCA
droWil2	scf2_1100000004822:2482594-2482757 +		GCCGA-GACCACCAAGGGTCCCATCAGCTTCCACGAATGGCAGGGCAAGAAGTGAGTTTCACATTAATTAATGATC---C--------------------------------ATTGAT----------------------GGCAT-----------CG--------TC-------------------AAA-TTGAT-CA----------------------------------------------------------------TTTTC---T--------CTTTTAGCTGGGTAGTTCTGTTCTCCCATCCTGCTGACTTCACCCCCGTCTGCACCA
droVir3	scaffold_12875:16258603-16258756 -	dvi_7263	GCGGA-GACCACCAAGGGTCCGATTAGCTTCCACGAATGGCAGGGCAACTCGTGAGTATTGCA-CA---------------------------------------------------------TAC----CCTATAAATATATATATATAGTC--------------------------------------------CA----------------------------------------------------------------CTT-T---C--------CCTATAGCTGGGTGGTGCTCTTCTCGCATCCCGCCGATTTTACGCCCGTTTGCACCA
droMoj3	scaffold_6496:7496430-7496670 +	dmo_1023	GCGGA-GACCACAAAGGGTCCCATTAGCTTCTACGAATGGCAGGGCGACTCGTAAGTAAACGCACA---------------------------------------------------------CAC-ACTCATA--------------CAGTT-GA-----------CAAAATAAGTTTGAGTACACTCATAAATATCCTCTAAATTATATGAAAATTACATAATTATTTACAAATATAAAAATAATAAATATAAATACTATATCTTC---T--------TCTCTAGCTGGGTTGTGCTCTTCTCTCATCCATCTGACTTTACGCCCGTGTGCACCA
droGri2	scaffold_15245:5130623-5130809 +		GCGGA-GACCACCAAGGGACCCATTTTCTTCCACGACTGGCAGGGAGACTCGTGAGTATTATATAAATAAATAGTATTTCATTTATT-----TTATTTTATTTATTAAATAT---------------------------------------------------------------------------TTATTAACATCGCT----------------------------------------------------------------C-TTTAC----TGCTATTGCAGCTGGGTTGTGCTCTTCTCTCATCCGTCCGATTTTACGCCCGTTTGCACGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCGA-CACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CCCTTTTCCTC--------------TGATCG--AA--------TC-------------------TCA-CCAATTCTCC----------------------------------------------------------------C-TCGGA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACGCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................CTTTTCCTC--------------TGATCG--AA--------TC-------------------TC....................................................................................................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCA-CCAATTCTCC----------------------------------------------------------------C-TCGGA--------TCGCCAGC.................................................	27	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................CCCTTTTCCTC--------------TGATCG--AA--------TC-------------------......................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TAAATTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTTCCTC--------------TGATCG--AA--------TC-------------------TCA-C.................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................C-TCGGA--------TCGCCAGCTGGGTGG..........................................	21	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTTCTCTCACCCCGCCG.....................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACTTCACGCCCGTCTGCAC..	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCGGA--------TCGCCAGCTGGG.............................................	17	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................TGGCAGGGCAACTCGTAAGTG.......................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCA-CCAATTCTCC----------------------------------------------------------------C-TCGGA--------TCGCCAG..................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................ACGAGTGGCAGGGCA..................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................CC----------------------------------------------------------------C-TCGGA--------TCGCCAGCTGGG.............................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCGGA--------TCGCCAGCTGGGTGGTGCTC.....................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CGGA--------TCGCCAGCTGGGTGGTGT.......................................	22	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CTGGGTGGTGCTCTTCTC................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCGA-CACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CCCTTTTTCTC--------------TGATCG--AA--------TC-------------------TCA-CCAATTCTCC----------------------------------------------------------------C-TCGGA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACGCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................CTCC----------------------------------------------------------------C-TCGGA--------TCGCCAGCTGGGT............................................	23	3	0.33	1	0	1	0	0

dm3

GCCGA-CACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CCCTTTTTCTC--------------TGATCG--AA--------TC-------------------TTA-CCAATTCTCC----------------------------------------------------------------T-TCGGA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACTCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................TCGGA--------TCGCCAGCTGGGTGGT.........................................	21	3	3.33	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
..........................AATTCCACGAGTGGCAGGGCA..................................................................................................................................................................................................................................................................................................	21	3	2.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................T-TCGGA--------TCGCCAGCTGGGTGG..........................................	21	3	1.67	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................ACCCCGCCGACTTCACTCCC..........	20	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................T-TCGGA--------TCGCCAGCTGGGTGGT.........................................	22	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................GA--------TCGCCAGCTGGGTGGTGCT......................................	21	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTAAATTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	22	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
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......................ATTAAATTCCACGAGTGGCAG......................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTTCTCTCACCCCGCCGACTT.................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TAAGTGCCATCAAA---------------------------------------------------------CCCTTTT...............................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTAAATTCCACGAGTGGCG.......................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCCGA-CACAACCAAGGGGCCCATCAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAAA---------------------------------------------------------CC-TCTTTCTG--------------TAATCA--AA--------TC-------------------TCA-CCAATCCTCT----------------------------------------------------------------C-T-ATA--------TCGCCAGCTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACTCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................AATTCCACGAGTGGCAGGGCA..................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	2	0	0
...........................ATTCCACGAGTGGCAGGGCAAC................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1	0
......CACAACCAAGGGGCCCATC........................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0
..............AGGGGCCCATCAAATTCCACGAGT...........................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	1	0

droYak3

GCCGA-CACAACCAAGGGGCCCATCAAATTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TAATCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGGGTGGTGCTCTTCTCCCACCCCGCCGACTTCACACCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------.........................................................	26	5	30.80	154	3	92	6	2	0	0	0	0	0	0	51
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTG..................................................................	25	5	16.20	81	0	67	2	0	0	0	2	0	0	0	10
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------T........................................................	27	5	15.60	78	3	46	2	0	0	0	2	0	0	0	25
........................................................................................................................................................................................................................................................................................TCGCCAGTTGGGTGGTGCTCTTCTCC...............................	26	4	13.50	54	0	18	14	2	0	0	0	0	0	0	20
........................................................................................................................................................................................................................................................................................TCGCCAGTTGGGTGGTGCTCTTCTC................................	25	4	10.00	40	0	6	3	2	0	0	0	0	0	0	29
.......................TCAAATTCCACGAGTGGCAGGGCAAC................................................................................................................................................................................................................................................................................................	26	5	5.80	29	0	20	5	0	0	0	4	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGACTT.................	25	4	4.50	18	0	18	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTCTCC...............................	25	4	4.50	18	0	10	6	2	0	0	0	0	0	0	0
....................CCATCAAATTCCACGAGTGGCAGGGC...................................................................................................................................................................................................................................................................................................	26	5	4.20	21	0	1	0	0	0	0	0	0	0	0	20
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTCTC................................	24	4	3.75	15	0	1	3	0	0	0	0	0	0	0	11
.....................CATCAAATTCCACGAGTGGCAGGGC...................................................................................................................................................................................................................................................................................................	25	5	3.60	18	0	3	2	0	0	0	0	0	0	0	13
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCCGAC...................	26	4	3.25	13	0	6	0	0	0	0	0	0	0	0	7
....................CCATCAAATTCCACGAGTGGCAGG.....................................................................................................................................................................................................................................................................................................	24	5	2.60	13	0	0	0	0	0	0	0	0	0	0	13
..........................................................................................................................................................................................................................................................................................................TCTTCTCCCACCCCGCCGACTTCACA.............	26	3	2.33	7	0	7	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTTCTCCCACCCCGCCGACTTCACACC...........	28	3	2.33	7	0	6	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCT...................................................................	24	5	2.00	10	1	8	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCC......................	23	4	1.75	7	0	3	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGACTTCA...............	27	3	1.67	5	0	5	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCTCCCACCCCGCCGACTTCACACC...........	25	3	1.67	5	0	3	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTTCTCCCACCCCGCCGACTTCACAC............	27	3	1.67	5	0	5	0	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCAGGGCAA.................................................................................................................................................................................................................................................................................................	25	5	1.60	8	0	7	0	0	0	0	1	0	0	0	0
.................................................TCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------.............................................................................................................................................................................................	27	5	1.60	8	0	7	1	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCAGGGCA..................................................................................................................................................................................................................................................................................................	24	5	1.60	8	0	3	1	0	0	0	0	0	0	0	4
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCCGA....................	25	4	1.50	6	0	5	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTCTCCCAC............................	28	4	1.50	6	0	1	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TC....................................................................	23	5	1.40	7	0	4	3	0	0	0	0	0	0	0	0
.............................TCCACGAGTGGCAGGGCAACTCGTAAG.........................................................................................................................................................................................................................................................................................	27	6	1.33	8	0	8	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTCTCCCACCCCGCCGACTTCACACC...........	26	3	1.33	4	0	4	0	0	0	0	0	0	0	0	0
........................CAAATTCCACGAGTGGCAGGGCAAC................................................................................................................................................................................................................................................................................................	25	5	1.20	6	0	5	1	0	0	0	0	0	0	0	0
........................................................................................................................................................CA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------.........................................................	25	5	1.20	6	0	6	0	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCAGGGC...................................................................................................................................................................................................................................................................................................	23	5	1.00	5	0	3	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCGCCAGTTGGGTGGTGCTCTTC..................................	23	5	1.00	5	0	1	4	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCAGGGCAACT...............................................................................................................................................................................................................................................................................................	27	5	1.00	5	0	4	1	0	0	0	0	0	0	0	0
............................TTCCACGAGTGGCAGGGCAACTC..............................................................................................................................................................................................................................................................................................	23	6	0.83	5	0	4	1	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	22	5	0.80	4	0	1	2	0	0	0	1	0	0	0	0
........................................................................................................................................................CA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTG..................................................................	24	5	0.80	4	0	4	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCGCCAGTTGGGTGGTGCTCTTCT.................................	24	4	0.75	3	0	2	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTTCTCCCACCCCGCCGACTT.................	22	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCCGACTT.................	28	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
........CAACCAAGGGGCCCATCAAATTCCACG..............................................................................................................................................................................................................................................................................................................	27	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCTCCCACCCCGCCGACTTCACACCCG.........	27	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGACTTC................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTCTCCCACCCCGCCGACTTCACACCCG.........	28	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TCCCACCCCGCCGACTTCACACCCGTC.......	27	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
.................................................TCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCT............................................................................................................................................................................................................	26	5	0.60	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TC.......................................................	28	5	0.60	3	0	3	0	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCAGG.....................................................................................................................................................................................................................................................................................................	21	5	0.60	3	0	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCC...................................................................	24	5	0.60	3	1	0	2	0	0	0	0	0	0	0	0
.....................CATCAAATTCCACGAGTGGCAGG.....................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	2	1	0	0	0	0	0	0	0	0
.................................................TCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------T............................................................................................................................................................................................	28	5	0.60	3	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCGCCAGTTGGGTGGTGCTCTTCTCCCAC............................	29	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
............................TTCCACGAGTGGCAGGGCAACTCG.............................................................................................................................................................................................................................................................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0	0
............CAAGGGGCCCATCAAATTCCACGAGT...........................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGGGTGGTGCTCTTCTCCCACCCCGC.......................	26	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTCTCCC..............................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCCG.....................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCGCCAGTTGGGTGGTGCTCTTCTCCC..............................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTCTCCCA.............................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGAC...................	23	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------T........................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.....................CATCAAATTCCACGAGTGGCAGGGCA..................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.................................................TCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTT..............................................................................................................................................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
....................................................TAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TA...........................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.....................CATCAAATTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
..................................................CGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------.............................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------........................................................................	20	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
....................................................TAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------.............................................................................................................................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
.........................AAATTCCACGAGTGGCAGGGC...................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
................................................CTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTC.............................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTCTCCCACCCCGCCGACTTCACACCC..........	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCTCCCACCCCGCCGACTTCACACCCGTC.......	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGACTTCACA.............	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCTTCTCCCACCCCGCCGACTTCA...............	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.CCGA-CACAACCAAGGGGCCCATCAA......................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
..........ACCAAGGGGCCCATCAAATTCCACGAG............................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTTCTCCCACCCCGCCGACTTCACACC...........	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........ACCAAGGGGCCCATCAAATTCCACG..............................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCTCCCACCCCGCCGACTTCACAC............	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTCTCCCACCCCGCCGACTTCACACA...........	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGACTTCAA..............	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCTCCCACCCCGCCGACTTCACACCCGT........	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTGCTCTTCTCCCACCCCGCCGACT..................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TTGGGTGGTGCTCTTCTCCCACCCC.........................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGA....................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCCAGTTGGGTGGTGCTCTTCTCC...............................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCCGACT..................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CACCCCGCCGACTTCACACCCGTCTGCAC..	29	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTCTCCA..............................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGTGCTCTTCTCCCACCCCGCCG.....................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TGCTCTTCTCCCACCCCGCCGACT..................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TTGGGTGGTGCTCTTCTCCCACCCCGCC......................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CCCACCCCGCCGACTTCACACCCGTC.......	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGTGCTCTTCTCCCACCCCGCC......................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCCAGTTGGGTGGTGCTCTTCTCCC..............................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTGGTGCTCTTCTCCCACCCCGCCGA....................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GCCGACTTCACACCCGTCTGCACCA	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCTCTTCTCCCACCCCGCCGACT..................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCTCTTCTCCCACCCCGCCGACTT.................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGTGCTCTTCTCCCACCCCGCCGACT..................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGTGCTCTTCTCCCACCCCGCCGACC..................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................CA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TC.......................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AATCGTCT----------------------------------------------------------------C-TCTGA--------TCGCCAG..................................................	21	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................TAATCGTCT----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGG..............................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TT.......................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................TCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTC.............................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCTGA--------TCGCCAGTTGGGTGGTGCTC.....................................	25	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0
................GGGCCCATCAAATTCCACGAGTGGCAG......................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................A--------TCGCCAGTTGGGTGGTGCTCTT...................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CA--AG--------TC-------------------TCA-CTAATCGTC.........................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................TCAAATTCCACGAGTGGCA.......................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCT...................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
..............................................AACTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TT................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................AAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------.............................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................A--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------.........................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................GTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TAAA.........................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................C-TCTGA--------TCGCCAGTTGGGTGGT.........................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................TCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTT...............................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TCGCC....................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCT----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGGGTGGTGCT......................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
......................................GGCAGGGCAACTCGTAAGTGCCATT..................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................G--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TCGC.....................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
...............................................ACTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTT...............................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TAATCA--AG--------...........................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
....................CCATCAAATTCCACGAGTGG.........................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0
................................................CTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------.............................................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................CAAATTCCACGAGTGGCAG......................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0
......................ATCAAATTCCACGAGTGGCAGGGCAT.................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................GGCCCATCAAATTCCACGAGTGGCA.......................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TC.......................................................	25	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................AAA---------------------------------------------------------CCC-TTTTCTC--------------TAATCA--AG--------TC-------------------TCA-C.................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...................CCCATCAAATTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TAATT........................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCGTCT----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGGG.............................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................ATCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTG..................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-T.....................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-C.....................................................................	22	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
......................ATCAAATTCCACGAGTGGCAGGGC...................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCCAGTTGGGTGGTGCTCTTC..................................	21	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCTGA--------TCGCCAGTTGGGTGGT.........................................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
......................ATCAAATTCCACGAGTGGCAGGGCAA.................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
......................ATCAAATTCCACGAGTGGCAGGGCAAC................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGGCAGGGCAACTCGTAAGTGCCAT...................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................CAAATTCCACGAGTGGCAGGGCT..................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTTC..................................	22	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCCAGTTGGGTGGTGCTCTT...................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------TCGCCAG..................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...............................................ACTCGTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCT............................................................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................CAAATTCCACGAGTGGCAGGGCA..................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGC--------.........................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................C-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------T........................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................CATCAAATTCCACGAGTGGCAGGGCAA.................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCT----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGGGTG...........................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...................................................GTAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------.............................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.........................AAATTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................T----------------------------------------------------------------C-TCTGA--------TCGCCAGTTGGGTGGTGC.......................................	25	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TTCTC--------------TAATCA--AG--------TC-------------------TCA-CTAATCG...........................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TCTGA--------AA.......................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AATCA--AG--------TC-------------------TCA-CTAATCGTCT----------------------------------------------------------------C-TC....................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
....................................................TAAGTGCCATTAAA---------------------------------------------------------CCC-TTTTCTC--------------TAA..........................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
............................TTCCACGAGTGGCAGGGCAACT...............................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................TCCACGAGTGGCAGGGCAACTC..............................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................TCCACGAGTGGCAGGGCAACTCGTAAGT........................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................TCCACGAGTGGCAGGGCAACTCT.............................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
..............................CCACGAGTGGCAGGGCAACTC..............................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................TCCACGAGTGGCAGGGCAACTCG.............................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.................................CGAGTGGCAGGGCAACTCGTAAGTGC......................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................TCCACGAGTGGCAGGGCAACTCGT............................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GCCGA-CACCACCAAGGGGCCAATCAGCTTCCACGAGTGGCAGGGCAATTCGTAAGTTCCATTTGG---------------------------------------------------------GTTACTTTTTT--------------CATCCG--AT--------AC-------------------TCATCTAGTTCTCC----------------------------------------------------------------C-TCTGA--------TCCCCAGGTGGGTGGTGCTCTTCTCTCACCCCGCCGACTTCACTCCCGTTTGCACAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCGA-CACCACCAAGGGGCCCATCAGCTTCCACGAGTGGCAGGGCAACTCGTAAGTCAAAA--CA----------------------------------------------------------CCAC-TCCTCT-------------CGATCG--AT--------AC-------------------TCATCCTGCTATTA----------------------------------------------------------------C-TCCCA--------TC-CCAGGTGGGTGGTGCTCTTCTCCCACCCCGCCGACTTCACCCCCGTGTGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCGACCACCACCAAGGGACCCATCAGCTTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCAGA---------------------------------------------------------CCA-GCTTCCC--------------CAGTT-TC-----------CCAATG-------------CTCATCCAGTTCTCC----------------------------------------------------------------C-TCCGATCCCCGG-TCCTCAGGTGGGTGGTGCTCTTCTCCCACCCCGCCGACTTCACCCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCGA-CACCACCAAGGGGCCCATCAGCTTCCACGAGTGGCAGGGCAATTCGTAAGTGCCTTTGAA---------------------------------------------------------AACATTTTCTC--------------CGGTCG--TT--------ACTCATC-------------CTCATCCAATCCTCC----------------------------------------------------------------G-TGTGA--------TCCTCAGGTGGGTGGTGCTCTTTTCCCACCCCGCCGACTTCACGCCCGTGTGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCGA-CACCACCAAGGGGCCCATCAGCTTCCACGAGTGGCAGGGCAACTCGTAAGTGCCATCCAG---------------------------------------------------------ACCACTTTCTC--------------CGGTCG--AT--------GC-------------------TCATCCAATCCTC-----------------------------------------------------------------C-CCTAT--------TCCACAGGTGGGTTGTGCTCTTCTCCCACCCCGCCGACTTCACCCCCGTGTGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCGA-CACCACCAAGGGACCCATCAAGTTCCACGAGTGGCAGGGCAACTCGTAAGTGCTACCTAT----------TAC--------------------------------------------CCCACACTCCC--------------TATCCC--GT--------AC-------------------TCATCCAATACT--------------------------------------------------------------------TCCAA--------CCTTCAGCTGGGTGGTGCTCTTCTCGCACCCCGCCGACTTCACACCCGTCTGCACAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCGA-GACCACCAAGGGCCCCATCAACTTCCACGAGTGGCAGGGCAACCAGTAAGTAGACCCCAC-----------------------------------------------------TGAACTCTCTT-------------------A------AGGCTCTTGGGC-------------------TCATACGATCCCTC--------------------------------------------------------------TCC-TCCGG--------TCCCCAGGTGGGTGGTGCTCTTCTCGCACCCCGCTGACTTCACGCCGGTGTGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCCGA-CACCACCAAGGGCCCCATCAACTTCCACGAGTGGCAGGGCAAATCGTAAGTAGATCC-------------------------------------------------CTCGTCCT--AGTG--------C---CAGACAT-----------TG--------TC-------------------TCA-TTGGTGCA----------------------------------------------------------------TCCTCCCGA--------TCTACAGGTGGGTGGTGCTCTTCTCCCACCCCGCTGACTTCACGCCCGTGTGCACCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................GTAAGTAGATCC-------------------------------------------------CTCGTCCT--.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................GAGTGGCAGGGCAAATCGTGG..........................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
GCCGA-CACCACCAAGGGCCCC...........................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................GGTGCTCTTCTCCCACCCCGCTGACT..................	26	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ACAGGTGGGTGGTGCTCTTCT.................................	21	3	0.33	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................CCCACCCCGCTGACTTCACGCCCGTGT......	27	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TGACTTCACGCCCGTGTGCAC..	21	3	0.33	1	0	0	0	0	0	1
.........................AACTTCCACGAGTGGCAGGG....................................................................................................................................................................................................................................................................................................	20	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACTTCACGCCCGTGTGCACCA	21	3	0.33	1	0	0	0	0	0	1

droBip1

GCCGC-CACCACCAAGGGCCCCATCAACTTCCACGAGTGGCAGGGCAACTCGTAAGTAGATCC-------------------------------------------------CTCCTCCTTAAATC--------T-------------CAGAGG--AG--------AC-------------------TCA-TGTGTTCATC----------------------------------------------------------------TTCACAA--------TCAACAGGTGGGTGGTGCTCTTCTCCCACCCCGCTGACTTCACCCCAGTGTGCACTA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCCGA-CACCACCAAGGGGCCGATCAACTTCCACGAATGGCAGGGAAACTCGTGAGTTGCATCCAA---------ATCGCATTCATTTCCACTCCCACTAAATACCGAATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTAGATGGGTGGTTCTGTTCTCGCATCCGGCCGATTTCACGCCCGTGTGCACCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
GCCGA-CACCACCAAGGGGCCGATC........................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	1	0	0	1	0	0	0
.................GGCCGATCAACTTCCACGAATGGCAGG.....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................CAACTTCCACGAATGGCAGGGAA..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................ACGAATGGCAGGGAAACTC..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................ATCAACTTCCACGAATGGC........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTGGTTCTGTTCTCGCATCCG.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CCACCAAGGGGCCGATCAA......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GATTTCACGCCCGTGTGCACC.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTGGTTCTGTTCTCGCATCC..........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................CCACGAATGGCAGGGAAA.................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGGGTGGTTCTGTTCTCGCATCCGGC.......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................ATCAACTTCCACGAATGGCAGGGC...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GCCGA-CACCACCAAGGGGCCGATCAACTTCCACGAATGGCAGGGAAACTCGTGAGTTGCATCCAA---------ATCGCATTCATTTCCACTCCCACTAAATACCGAATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTAGATGGGTGGTTCTGTTCTCGCATCCGGCCGATTTCACGCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................GTGGTTCTGTTCTCGCATC...........................	19	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................ATGGGTGGTTCTGTTCTCGC..............................	20	1	1.00	1	1	0	0	0	0	0

droWil2

GCCGA-GACCACCAAGGGTCCCATCAGCTTCCACGAATGGCAGGGCAAGAAGTGAGTTTCACATTAATTAATGATC---C--------------------------------ATTGAT----------------------GGCAT-----------CG--------TC-------------------AAA-TTGAT-CA----------------------------------------------------------------TTTTC---T--------CTTTTAGCTGGGTAGTTCTGTTCTCCCATCCTGCTGACTTCACCCCCGTCTGCACCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................CTTCACCCCCGTCTGCAC..	18	2	1.00	2	2	0	0	0	0
.........................AGCTTCCACGAATGGCAGGGCAAGAAC.............................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	0	1	1	0
...........................................................................................................................................................................................................................................................................................................GTTCTCCCATCCTGCTGACTT.................	21	2	0.50	1	0	1	0	0	0
....................................................................................................................AT----------------------GGCAT-----------CG--------TC-------------------AAA-TTGAT-CA----------------------------------------------------------------TT........................................................................	23	2	0.50	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................CTGGGTAGTTCTGTTCTCCC..............................	20	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................TCTCCCATCCTGCTGACTTCA...............	21	2	0.50	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................TGGGTAGTTCTGTTCTCCC..............................	19	2	0.50	1	0	1	0	0	0
..................TCCCATCAGCTTCCACGAATG..........................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
.................GTCCCATCAGCTTCCACGAAT...........................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0
...........................CTTCCACGAATGGCAGGGCAAGAAC.............................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................TTCTGTTCTCCCATCCTGCTGAC...................	23	2	0.50	1	0	1	0	0	0
....................................................................................................................AT----------------------GGCAT-----------CG--------TC-------------------AAA-TTGA..............................................................................................................................................	18	2	0.50	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................CTGGGTAGTTCTGTTCTCCCATCCTGCT......................	28	2	0.50	1	0	1	0	0	0

droVir3

GCGGA-GACCACCAAGGGTCCGATTAGCTTCCACGAATGGCAGGGCAACTCGTGAGTATTGCA-CA---------------------------------------------------------TAC----CCTATAAATATATATATATAGTC--------------------------------------------CA----------------------------------------------------------------CTT-T---C--------CCTATAGCTGGGTGGTGCTCTTCTCGCATCCCGCCGATTTTACGCCCGTTTGCACCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....A-GACCACCAAGGGTCCGATTAGC.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GATTTTACGCCCGTTTGCAC..	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................CTCGCATCCCGCCGATTTTA...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CCGATTAGCTTCCACGAAT...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGATTAGCTTCCACGAATGGCAGGGC...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACTCGTGAGTATTGCA-CA---------------------------------------------------------......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAGGGTCCGATTAGCTTCC.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GGGTGGTGCTCTTCTCGCATCCCGCCGA....................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............CAAGGGTCCGATTAGCTTCCAC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCGGA-GACCACAAAGGGTCCCATTAGCTTCTACGAATGGCAGGGCGACTCGTAAGTAAACGCACA---------------------------------------------------------CAC-ACTCATA--------------CAGTT-GA-----------CAAAATAAGTTTGAGTACACTCATAAATATCCTCTAAATTATATGAAAATTACATAATTATTTACAAATATAAAAATAATAAATATAAATACTATATCTTC---T--------TCTCTAGCTGGGTTGTGCTCTTCTCTCATCCATCTGACTTTACGCCCGTGTGCACCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................TTCTACGAATGGCAGGGC...................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TTGTGCTCTTCTCTCATCCATCTGA....................	25	1	1.00	1	1	0	0	0	0	0
......................ATTAGCTTCTACGAATGGCAGG.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CATCCATCTGACTTTACGCC...........	20	1	1.00	1	0	0	0	0	0	1

droGri2

GCGGA-GACCACCAAGGGACCCATTTTCTTCCACGACTGGCAGGGAGACTCGTGAGTATTATATAAATAAATAGTATTTCATTTATT-----TTATTTTATTTATTAAATAT---------------------------------------------------------------------------TTATTAACATCGCT----------------------------------------------------------------C-TTTAC----TGCTATTGCAGCTGGGTTGTGCTCTTCTCTCATCCGTCCGATTTTACGCCCGTTTGCACGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........ACCAAGGGACCCATTTTCTTC..................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0

dsi_2865

2r:7083510-7083571 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-2.7	-2.5	-2.4