ID:dsi_28646 |
Coordinate:3l:8138276-8138425 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -24.6 | -24.3 | -24.3 |
 |
 |
 |
five_prime_UTR [3l_8138095_8138275_+]; exon [3l_8138095_8138275_+]; intron [3l_8138276_8140753_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCCAAAGTAAAGTGCGGATTTTCCAAGAACATAACAGTTAAGATCAAAAAGTAAGTTATAAATCCCTGTCTTTGGTACACAAAAAGCGCGCGAAAATATGAGAACAGCTGTTGCATTCTCAACCAGCGTTGCCAAATGTGGCAAATAAATAAAGCAATTATATGAAATCAATTGTTAAGTAGCCCTAACTGTATTTAAGTCACTAGATTAGATAGCTTAACTAGGAACTTCATTAATATTCATATTATTT **************************************************...................(((.((((((......((.(((.......((((((..((....)).))))))....)))((((((....))))))........(((((((..........))))))).....))......)))))).))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................CCTGTCTTTGGTACACAA........................................................................................................................................................................ | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................TTACTGTATTTAAGTCACTAGA........................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................................................................................................................................................AACTAAGAACTTCATTAATAT........... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................................................................................................................GCCCTGACTGTATTTAA.................................................... | 17 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................ATAGCTTAACTATGAA....................... | 16 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 1 |
|
AGGTTTCATTTCACGCCTAAAAGGTTCTTGTATTGTCAATTCTAGTTTTTCATTCAATATTTAGGGACAGAAACCATGTGTTTTTCGCGCGCTTTTATACTCTTGTCGACAACGTAAGAGTTGGTCGCAACGGTTTACACCGTTTATTTATTTCGTTAATATACTTTAGTTAACAATTCATCGGGATTGACATAAATTCAGTGATCTAATCTATCGAATTGATCCTTGAAGTAATTATAAGTATAATAAA
**************************************************...................(((.((((((......((.(((.......((((((..((....)).))))))....)))((((((....))))))........(((((((..........))))))).....))......)))))).))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ...................AAAGGTTCTTGTATTGTCAATT................................................................................................................................................................................................................. | 22 | 0 | 1 | 3.00 | 3 | 2 | 1 | 0 | 0 | 0 |
| ...................................TCAATTCTAGTTTTTCATTCA.................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............GCCTAAAAGGTTCTTGTATTGT...................................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...................................................ATTCAATATTTAGGGACAGAA.................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ............................................................TTAGGGACAGAAACCATGTGTT........................................................................................................................................................................ | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................GGAACAGAAAACATGAGTTTT...................................................................................................................................................................... | 21 | 3 | 7 | 0.29 | 2 | 2 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................CGTTTACTTAGTTCGTTAA........................................................................................... | 19 | 2 | 9 | 0.11 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................................................................CCGTTAATTTATTTCGT.............................................................................................. | 17 | 1 | 10 | 0.10 | 1 | 0 | 0 | 0 | 1 | 0 |
| ............................TGGATTCTCAATTCTAG............................................................................................................................................................................................................. | 17 | 2 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................AGCGATCTCATCTATC................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:43 AM