ID:

dsi_28624

 Coordinate:

3l:19796929-19797078 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCAACGGCTTCGAACCGGGAGCTAACCCAACAATTTCGGAGGGATGGAAGGTGCGTGGTTTACCCCAGACCTTAGAATCTTATCTAGCATTAATTTCGATACTAACGCCCTACTGGCGGCGGGCTTATCTGGCTGACAATTTTTTAATTACCCACCCAGTTCGCGCCGCGAATCGCCAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCGGTCGTCTGTC
**************************************************.((((((((((.....))))).((((......))))((.(((..........))).)).....(((((((((((....((((.((..((((....))))...)).))))...)).))))....))))).........)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................................................GGAACGTTCGCTTCGGTC....... 18 0 1 6.00 6 6 0 0 0 0 0 0 0
.......................AACCCAACAATTTCGGAGG................................................................................................................................................................................................................ 19 0 1 3.00 3 1 2 0 0 0 0 0 0
...............................AATTTCGGAGGGATGGAAGC....................................................................................................................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCGGAACGTTCGCTTCGGTC....... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AATCGGAACGTTCGCTTCGGTC....... 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...............CGGGAGCTAACCCAACAATTTCGGA.................................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................TTTCGGAGGGATGGAAGC....................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.........TCGAACCGGGAGCTAACC............................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...................AGCTAACCCAACAATTTCGGAG................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
........................ACCCAACAATTTCAGAGGGATGGAAGC....................................................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................CGGAACGTTCGCTTCGGTCGTC.... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...................AGCTAACCCAACAATTTCGGAGG................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................CGGAACGTTCGCTTCGGTCGTCTGTC 26 0 1 1.00 1 1 0 0 0 0 0 0 0
............................AACAATTTCGGAGGGATGGAA......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......CTTCGAACCGGGAGCTAACC............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................ACAATTTCGGAGGGATGGAA......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
....................GCTAACCCAACAATTTCGGAG................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................TAACCCAACAATTTCGGAGG................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................ACAATTTCGGAGGGATGGAAGC....................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................CAACAATTTCGGAGGGAT............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTTCGGTC....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...............CGGGAGCTAACCCAACAATTTCGGG.................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................CAATTTCGGAGGGATGGAA......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTGGGAACGTTCCCTTCGGT........ 20 3 4 0.25 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................GGAACGATCGCTTCGGC........ 17 2 14 0.21 3 0 0 0 0 3 0 0 0
................................................................................................................CTGGCGGCGTGCTTAAC......................................................................................................................... 17 2 11 0.18 2 0 0 0 1 0 1 0 0
...............................................................................................................................................................................................................................TGGGAACGTGCCCTTCGGT........ 19 3 12 0.17 2 0 0 0 2 0 0 0 0
..............................................................................................................................................................................................................................ATCGGAACGTTCCCT............. 15 1 8 0.13 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TGGGAACGATCGCTTCGGC........ 19 3 18 0.11 2 0 0 0 0 2 0 0 0
..........................................................................................................................................................CCCAGCGCGCGCCGCGA............................................................................... 17 2 18 0.11 2 0 0 0 0 0 0 2 0
................................................................................................................................................................................................................................GGGAACGATCGCTTCG.......... 16 2 20 0.10 2 0 0 0 0 0 2 0 0
.........................................................................................................................................................ACCCAGCGCGCGCCGCGA............................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 1 0
................................................................................................................CTGGCGGCAGGCTTAAC......................................................................................................................... 17 2 13 0.08 1 0 0 0 1 0 0 0 0
.....................................................................................................................GCCGGGCTTTACTGGCTGA.................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0
.................................................................................................................TGGCGGCGGGCTTGT.......................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................GGAACGATCGCTTCGGCGG...... 19 3 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

GGTTGCCGAAGCTTGGCCCTCGATTGGGTTGTTAAAGCCTCCCTACCTTCCACGCACCAAATGGGGTCTGGAATCTTAGAATAGATCGTAATTAAAGCTATGATTGCGGGATGACCGCCGCCCGAATAGACCGACTGTTAAAAAATTAATGGGTGGGTCAAGCGCGGCGCTTAGCGGTTGATATTTTTGCGTTTCCGACGTTAACTAACTCAATCATTGCTTTAGCCTTGCAAGCGAAGCCAGCAGACAG
**************************************************.((((((((((.....))))).((((......))))((.(((..........))).)).....(((((((((((....((((.((..((((....))))...)).))))...)).))))....))))).........)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 M023
head
....GCCGAAGCTTGGCCCTCGGTT................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...............GCCCTGAATTGGGTTGTTAAA...................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................GCTTATCGGTTGAGACTTTTGC............................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0 0
......................................................................................................................................................GGGTCGGTGAAGCGCAGCGC................................................................................ 20 3 4 0.50 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCTTGAGCCTAGCAAGCGA............. 19 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................ATGATTGCGGGATAA........................................................................................................................................ 15 1 6 0.17 1 0 0 0 0 1 0 0 0
................CCCTGAATTGGGTTGTTA........................................................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TTCCGACGGTAACTAA.......................................... 16 1 6 0.17 1 1 0 0 0 0 0 0 0
.....CCGAAACTTGGCACACGATT................................................................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0
...................CCGGTTGGGTTGTCAAAGCC................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................TGCAAGCTTACCCAGCAG.... 18 3 20 0.10 2 0 0 0 2 0 0 0 0
.....CCTAAGCTTGGCCCT...................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0
........................................................CCGAAGGGGGTCGGGAATC............................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0
.....CGGAAGCTGGGCGCTCGA................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
.............................................................TCGGGTGGGGAATCTTAGA.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
...................TTGATTGGGTTGTTA........................................................................................................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................GTAAGTGAAGCTACGATTG................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19796879-19797128 - dsi_28624 CCAACGGCTTCGAACCG-----GGAGCTAACCC-----------------AACAAT-TTCGGAGGGATGGAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGCATTAATTTCGA-TAC-----TAACGCCC-TACT---GGCGGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCAG---TTC------G----CGCC----GCGAATC-GC----CAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCGGTCGTCTGTC---
droSec2 scaffold_11:117523-117772 - CCAACGGCTTCGAACCG-----GGAGCTAACCC-----------------AACAAT-TTCGGAGGGATGGAAGGTGCGTGGCTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGCATTAATTTCGA-TAC-----TAACGCCC-TACT---GGCGGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCAG---TTC------G----CGCG----GCGAATC-GC----CAACTATAAAAACGCAAAGGCTGCTATTGATTGAGTTAGTAACGAATTCGGAACGTTCGCTTCGGTCGTCTGTC---
dm3 chr3L:20213245-20213498 - CCAACGCCTTCGAACCG-CCTTCAAGCTAACCC-----------------AACAAC-TTCGGAGGGATGCAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGCATTAATTTCGA-TAC-----TAACGCCC-TACT---GGCGGCT------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCAG---TTC------G----CGCC----GCGAATT-GT----CAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCGGTCGTCTGTC---
droEre2 scaffold_4784:19937330-19937575 - CCAACGCTGTTGAACAG-----GGCGCTAACCC-----------------AACAAT-TTCGGAAGGATGGAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCA-------------------------------------GGCTTTAATTTCGA-TAC-----TAACGCCC-TACT---GTCAGCG------GGCTTATCTG----------------GCTGACAATTT-TTAATTACCCACCCTG---TTC------G----CACC----GCGAATC-GC----CTACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCAGTCGTCT------
droYak3 3L:20359128-20359374 + CCAACGCTGTTGAACCG-----GGAGCTAAGCC-----------------AAAAAT-TTCTGAAGGATGGAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCA-------------------------------------AGCTTTAATTTCGA-TAC-----TAACGCCC-TACT---GGCAGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCTG---TTC------T----CGCC----GCGAATC-GC----CAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCAGTCGTCG------
droEug1 scf7180000409711:5742067-5742328 + CCAACGCTGTCGAGCCG-----GGAGTTAAACCCCCCCAAAAAAAATCTAAAAAAT-T----AAGGATGGAAGGTGCGTGGTTTACC------CAG--ACCTTTA---------GAATCTTATCT-------------------------------------AGTTTTAATTTCGA-TAC-----TAACGCCAAGGCT---GGTAGTG------GGCTTATCGG----------------GTTGACAATTTTCTAATTAACTACAATG---T-C------G----TGCC----GCGAATGGGC----CAACTATATAAACGCAAAGGCTGCGAATGATTGGGTTAGTAACGAAATCGGAACCTTCGCTTCAGTCATCTG-----
droBia1 scf7180000302193:2992116-2992343 - CCAACGCTGTCGAGCCG-----GGAGCTAAACC-----------------AAAAAT-T----AAGGATGAAAGGTGCGTGGCTTACC-----CCAG--ACC-TTA---------GAAATTTATCT-------------------------------------AGTTTTAATTTCGA-TAC---------------------------G------GGCTTATCTG----------------TCTGACAATTTTTTAATTACCCACTCTG---T-C------G----CGCC----GCGAATGGGC----CAACTATAAAAACGCAGAGGCTGCCATTGATTGGGTTAGTAAAGAAATCGGAACGTTCGCTTCAGTCGTCTGCC---
droTak1 scf7180000415868:173012-173235 - CCAACGCTGTCGAGCCG-----GGAGCTAAACC-----------------AAAAAT-T----AAGGATGAAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATTTTATCT-------------------------------------AGTTTTAATTTCGA-TAC---------------------------G------GGCTTATCGG----------------GCTGACAATTTTTTAATTACCCGCTTTG---T-C------G----TGCC----GCGAGTGGGC----CAACTATAAAAACGCAGAGGCCTCCATTGATTGGGTTAGTAACGAAATCGGAACGTTCGCTTCAGTCGTC-------
droEle1 scf7180000491193:4534439-4534689 - CCAACGCTGTCGAGCTG-AG--GGAGCTTAACC-----------------AAAACT-T----AAGGATGGAAGGTGCGTGGTTTACC-----CCAG--TCC-CCA---------GAACCTTATCT-------------------------------------AGTTTTAATTGCGA-TAC-----TAACGCCT-TCTTGTCGACGACG------GGCTTATCTG----------------GCTGACAATTTTTTAATTAACCGCTCTG---C-C------GTGAGTGCC----GCGAATGGGC----CAACTATAAAAACCCAGAGGCTGCGATTGATTGGCTTAGTAACGAAATCGGAACGTTCGCTTCGCTAGTC-------
droRho1 scf7180000765904:223-472 - CCAACGCGGTCGAACAG-AG--CGAGCTAAGCCC----------------AA-AAGTT----CAGGATGGAAGGTGCGTGGTTTACCCTTACCGGG--ACC-CTA---------GAGTCTTATCT-------------------------------------AGTTTTAATTGCGA-TAC-----TAACGCCT-TGTC---GGCGGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTAACCGCGCTG---C-C------G----AGCC----GCGAATGGGC----CAACTATAAAAACGCAGAGGCTGCGATTGATTGGGCTAGTTACGGAATCGGAACGTTCGCTTCAGTCGTC-------
droFic1 scf7180000454113:2091868-2092112 + CCAACCTTGTTGATCTG-----GGAGCTAACC------------------AA-AAT-T--AAAAGGATGAAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGTTTTAATTGCGA-TACA----TTACGCTG-TGGT---GGCGACG------GGCTTATCTG----------------GCTGACAATTTTTTAATTAACCACTCCG---C-C------G----AGCCG---GGGAATTGGC----CAACTATAAAAACGTTGAGGCTGCGATTGATTGGTTTAGTAACGGAAACGGATCGTTCGCTTCAGTCGGC---C---
droKik1 scf7180000302441:2952402-2952653 - CCAACGCTGTTGAGCCG-----GGAGCTAACCCC----------------AAAAACTT----AAGGATGAAAGGTGCGTGCTTTACC-----CGAGAGACC-TTA---------GAATCTTATCT-------------------------------------AATTTTAATTGCGA-TAC-----TTACGGCC-TGTC---GACGGCGG----CGGCTTATCTG----------------GTTGACAATTT-TTAATTAACCGCTCTG---A-C------GAG--AGCCC---GGGGATGGGC----CAACTATAAAAACGCAGAGCCTGCGATCGAAAGGGTTAGTACCGGAATTGGAACGTTCGCTTCAGTCGATT--C---
droAna3 scaffold_13337:6336416-6336692 - CCGAGGCTTTCGACAAG--G--AGTGCTAATCA------AAGA--------AAACC-C-C-ACAGGATGAAAGGTGTGTGGTTTTAC-----CGAGATACC-CCA---------GAATCTTATCATTTATTGCT---------------TACGGGGGAGTTGAATTTTAATTGCGA-TAC-----TAACGCGTTTGCT---GGCGGCG---TTTGGCTTATCTG----------------GCTGACAATTTTTTAATTAAG-ACCCTCCACCTCC-GGCCG----TACTC---GGGTATCGGC-TATAAACTATAAAAACACAGAGCCTGCCATCGAATGGGTTAGTTACGGAATCGAATCGGTG---------------C---
droBip1 scf7180000396709:78263-78532 - CCGAGGCTTTCGACAAG--G--AGAGCTAATCA------AAGC--------AAAAC-CCCAAAAGGATGAAAGGTGTGTGGTTTTAC-----CGAAATACC-CCA---------GAATCTTATCGCT----------------------TTCGGGGAAGTTGAATTTTAATTGCGA-TAC-----TAACGCGTTTTCT---GGCGGCGGCATCTGGCTTATCTG----------------GCTGACAATTTTTTAATTAAG-ACCTTC---C-TACGGTGG----TGCTC---GGGGATGGGT-TAAGAACTATAAAAACACAGAGCCTGCCATTGAATGGGTTAGTAACGGAATCGAAACGGT--------------------
dp5 XR_group6:2076448-2076773 - CCAGCGCCACTGAC--GGGG--ACTACCAGTGC------GAGT--------ACAAT-TA--CAAGGATGAAAGGTGCGTGGTTTACC-----ATAG--TCC-GGGGACGGGAACAAATCTTATCGCTCGACTCTGACTCTGACTCCGACTTC---GACTCAGAATTTTAATTACGAATACGATATT-CTGCGT-TGCT---GCCGGAT------GGCTTATCTGCGGAGCTGCTGGAGTGTCTGACAATTTTTTAATTAAC-GCGCTG---C-CA-GGCTG----TGCTTGGCAGGGTTTGGCAGAGCGCCTATAAAAGCGCACAGCCAGCTTTTGGTCAGGCTAGTACCAGCATCG-----CTCTCTCAAGTGGAATATCGAA
droPer2 scaffold_9:369671-369996 - CCAGCGCCACTGAC--GGGG--ACTACCAGTGC------GAGT--------ACAAT-TA--CAAGGATGAAAGGTGCGTGGTTTACC-----ATAG--TCC-GGGGACGGGAACAAATCTTATCGCTCGACTCTGACTCTGACTCCGACTTC---GACTCAGAATTTTAATTACGAATACGATATT-CTGCGT-TGCT---GCCGGAT------GGCTTATCTGCGGAGCTGCTGGAGTGTCTGACAATTTTTTAATTATC-GCGCTG---C-CA-GGCTG----TGCTTGGCAGGGTTTGGCAGAGCGCCTATAAAAGCGCACAGCCAGCTTTTGGTCAGGCTAGTACCAGCATCG-----CTCTCTCAAGTGGAATATCGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCAACGGCTTCGAACCG-----GGAGCTAACCC-----------------AACAAT-TTCGGAGGGATGGAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGCATTAATTTCGA-TAC-----TAACGCCC-TACT---GGCGGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCAG---TTC------G----CGCC----GCGAATC-GC----CAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCGGTCGTCTGTC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................GGAACGTTCGCTTCGGTC..........1816.00600600000000000000
............................AACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................1913.00300100000000200000
.....................................................AAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2012.00200100000000100000
..................................................................................................................................................................................................................................................................................................................................................................TCGGAACGTTCGCTTCGGTC..........2012.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................AATCGGAACGTTCGCTTCGGTC..........2212.00200200000000000000
...............CG-----GGAGCTAACCC-----------------AACAAT-TTCGGA.................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.......................................................T-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.........TCGAACCG-----GGAGCTAACC................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
........................AGCTAACCC-----------------AACAAT-TTCGGAG................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................CGGAACGTTCGCTTCGGTCGTC.......2211.00100100000000000000
........................AGCTAACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................CGGAACGTTCGCTTCGGTCGTCTGTC---2611.00100100000000000000
..................................................AACAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.......CTTCGAACCG-----GGAGCTAACC................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...................................................ACAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.........................GCTAACCC-----------------AACAAT-TTCGGAG................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
...........................TAACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...................................................ACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
................................C-----------------AACAAT-TTCGGAGGGAT............................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTTCGGTC..........2711.00100100000000000000
...............CG-----GGAGCTAACCC-----------------AACAAT-TTCGGG.................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
....................................................CAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
droSec2
CCAACGGCTTCGAACCG-----GGAGCTAACCC-----------------AACAAT-TTCGGAGGGATGGAAGGTGCGTGGCTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGCATTAATTTCGA-TAC-----TAACGCCC-TACT---GGCGGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCAG---TTC------G----CGCG----GCGAATC-GC----CAACTATAAAAACGCAAAGGCTGCTATTGATTGAGTTAGTAACGAATTCGGAACGTTCGCTTCGGTCGTCTGTC---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................AAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................20115.001500150
.....................................................AAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................18110.001000100
......................................................AT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................19110.001000100
............................AACCC-----------------AACAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................2517.0070070
.CAACGGCTTCGAACCG-----GGAGC.....................................................................................................................................................................................................................................................................................................................................................................2115.0050050
................................................................................................................................................................................................................................................................................................................................................................ATTCGGAACGTTCGCTTCGGTC..........2215.0050050
..................................................AACAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................2014.0040040
.....................................................AAT-TTCGGAGGGATGGAAGCA.....................................................................................................................................................................................................................................................................................................................2114.0040040
..................................................AACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2314.0040040
..AACGGCTTCGAACCG-----GGAGCT....................................................................................................................................................................................................................................................................................................................................................................2114.0040040
CCAACGGCTTCGAACCG-----GG........................................................................................................................................................................................................................................................................................................................................................................1914.0040040
................................C-----------------AACAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................2114.0040040
...........................................................................................................................................................................................................................................................................................................................................................AACGAATTCGGAACGTTCGCTTCGGTC..........2713.0030030
CCAACGGCTTCGAACCG-----GGA.......................................................................................................................................................................................................................................................................................................................................................................2013.0030030
.........................GCTAACCC-----------------AACAAT-TTCGGA.................................................................................................................................................................................................................................................................................................................................2013.0030030
..AACGGCTTCGAACCG-----GGAGC.....................................................................................................................................................................................................................................................................................................................................................................2013.0030030
.........................GCTAACCC-----------------AACAAT-TTCGGAGGGATGG..........................................................................................................................................................................................................................................................................................................................2712.0020020
.......CTTCGAACCG-----GGAGCTAAC.................................................................................................................................................................................................................................................................................................................................................................1912.0020020
....................................................CAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................1812.0020020
.......CTTCGAACCG-----GGAGCTAACC................................................................................................................................................................................................................................................................................................................................................................2012.0020020
...........................TAACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2012.0020020
...........................TAACCC-----------------AACAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................2712.0020020
CCAACGGCTTCGAACCG-----GGAGC.....................................................................................................................................................................................................................................................................................................................................................................2212.0020020
...........GAACCG-----GGAGCTAACCC-----------------AAC...........................................................................................................................................................................................................................................................................................................................................2012.0020020
...................................................ACAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................1912.0020020
................................C-----------------AACAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................2212.0020020
............................AACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................1912.0020020
.........................GCTAACCC-----------------AACAAT-TTCGGAG................................................................................................................................................................................................................................................................................................................................2112.0020020
.........................GCTAACCC-----------------AACAAT-TTCGGAGGG..............................................................................................................................................................................................................................................................................................................................2312.0020020
............................AACCC-----------------AACAAT-TTCGGAGGG..............................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................................................................................ATAAAAACGCAAAGGCTGCTATT.................................................2311.0010010
...............................CC-----------------AACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2511.0010010
...................................................ACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2211.0010010
.........................GCTAACCC-----------------AACAAT-TTCGGAGGGAC............................................................................................................................................................................................................................................................................................................................2511.0010010
................................C-----------------AACAAT-TTCGGAGGGAT............................................................................................................................................................................................................................................................................................................................1811.0010010
.............................ACCC-----------------AACAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................2511.0010010
.............................ACCC-----------------AACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2711.0010010
.........................GCTAACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2211.0010010
.......................................................T-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................AT-TTCGGAGGGATGGAAGCA.....................................................................................................................................................................................................................................................................................................................2011.0010010
...........GAACCG-----GGAGCTAACCC-----------------AACAAT-TTCG...................................................................................................................................................................................................................................................................................................................................2711.0010010
...ACGGCTTCGAACCG-----GGAGCT....................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................................C-----------------AACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2411.0010010
................................C-----------------AACAAT-TTCGGAGGGATGGAAGCA.....................................................................................................................................................................................................................................................................................................................2511.0010010
...............................CC-----------------AACAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................2211.0010010
..........................CTAACCC-----------------AACAAT-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................CAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2111.0010010
................................................................................................................................................................................................................................................................................................................................GCAAAGGCTGCTATTGATTGAGT.........................................2311.0010010
.......................................................T-TTCGGAGGGATGGAAGCA.....................................................................................................................................................................................................................................................................................................................1911.0010010
..........................CTAACCC-----------------AACAAT-TTCGGAGGGATGG..........................................................................................................................................................................................................................................................................................................................2611.0010010
....................................................CAAT-TTCGGAGGGATGGAAGCA.....................................................................................................................................................................................................................................................................................................................2211.0010010
CCAACGGCTTCGAACCG-----GGAG......................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........................CTAACCC-----------------AACAAT-TTCGGAG................................................................................................................................................................................................................................................................................................................................2011.0010010
......................................................AT-TTCGGAGGGATGGAAG.......................................................................................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................CGTTCGCTTCGGTCGTCT......1811.0010010
...........................TAACCC-----------------AACAAT-TTCGGAGGGATGGA.........................................................................................................................................................................................................................................................................................................................2611.0010010
..............................CCC-----------------AACAAT-TTCGGAGGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2611.0010010
............................................................................................................................................................................................................................................................................................................................................................ACGAATTCGGAACGTTCGCTTCGGTC..........2611.0010010
.....................................................AAT-TTCGGAGGGATGGAAG.......................................................................................................................................................................................................................................................................................................................1911.0010010
CCAACGGCTTCGAACCG-----GGAGCTA...................................................................................................................................................................................................................................................................................................................................................................2411.0010010
............................................................................................................................................................................................................................................................................................................................................ATTGATTGAGTTAGTAACGA................................2011.0010010
............................AACCC-----------------AACAAT-TTCGGAGGGATGGAA........................................................................................................................................................................................................................................................................................................................2611.0010010
dm3
CCAACGCCTTCGAACCG-CCTTCAAGCTAACCC-----------------AACAAC-TTCGGAGGGATGCAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGCATTAATTTCGA-TAC-----TAACGCCC-TACT---GGCGGCT------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCAG---TTC------G----CGCC----GCGAATT-GT----CAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCGGTCGTCTGTC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................CC-----------------AACAAC-TTCGGAGGGAT............................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CGGAACGTTCGCTTCGGTC..........1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAACCG-CCTTCAAGCTAACC................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GGAACGTTCGCTTCGGTC..........1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CAAC-TTCGGAGGGATGCAAGC......................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AC-TTCGGAGGGATGCAAGCA.....................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AACAAC-TTCGGAGGGATGCAAGC......................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AACCC-----------------AACAAC-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAAATCGGAACGTTCGCTTCGGTG..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAACCG-CCTTCAAGCTAACC................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CGGAACGTTCGCTTCGGT...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAAATCGGAACGTTCGCTTCGGTC..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAACCG-CCTTCAAGCTAACCC-----------------AACAAC-.......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AAAGGCTGCAATTGATTGAGT.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................ACGAAATCGGAACGTTCGCTTCGGTC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AAC-TTCGGAGGGATGCAAGC......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GCGAATT-GT----CAACTATAAAAACGC..............................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATCGGAACGTTCGCTTCGGTC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAGGCTGCAATTGATTGAG..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATCGGAACGTTCGCTTCGGT...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCAAAGGCTGCAATTGATTGAGT.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTTC..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AC-TTCGGAGGGATGCAAGC......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCTAACCC-----------------AACAAC-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........GAACCG-CCTTCAAGCTAACCC-----------------A.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................C-----------------AACAAC-TTCGGAGGGATGCAAG.......................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AACAAC-TTCGGAGGGATGC..........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCTAACCC-----------------AACAAC-TTCGGA.................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTCGGTCGTCTG.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTAACCC-----------------AACAAC-TTCGGAGGGAT............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTC...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCTAACCC-----------------AACAAC-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................C-----------------AACAAC-TTCGGAGGGATGCA.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AACGCCTTCGAACCG-CCTTCAAGCT....................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AACAAC-TTCGGAGGGATGCAA........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTAACCC-----------------AACAAC-TTCGGAGG...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAATCGGAACGTTCGCTTCGGTC..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CAAC-TTCGGAGGGATGCA.........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCAAAGGCTGCAATTGATTGA...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGC.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
CCAACGCTGTTGAACAG-----GGCGCTAACCC-----------------AACAAT-TTCGGAAGGATGGAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCA-------------------------------------GGCTTTAATTTCGA-TAC-----TAACGCCC-TACT---GTCAGCG------GGCTTATCTG----------------GCTGACAATTT-TTAATTACCCACCCTG---TTC------G----CACC----GCGAATC-GC----CTACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCAGTCGTCT------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................AAT-TTCGGAAGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2012.0020002000
....................................................CAAT-TTCGGAAGGATGGAA........................................................................................................................................................................................................................................................................................................................1911.0010001000
................................C-----------------AACAAT-TTCGGAAGGATGGAA........................................................................................................................................................................................................................................................................................................................2211.0010100000
..................................................................................................................................................................................................................................................................................................................................AAAGGCTGCAATTGATTGAGTT........................................2211.0010100000
......CTGTTGAACAG-----GGCGCTAACC................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..................................................AACAAT-TTCGGAAGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2311.0010001000
...............................................................................................................................................................................................................................................................................................................................................................AAATCGGAACGTTCGCTTC..............1911.0010100000
......CTGTTGAACAG-----GGCGCTAACCC-----------------..............................................................................................................................................................................................................................................................................................................................................2211.0010100000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTTCAGTC..........2711.0010100000
............................AACCC-----------------AACAAT-TTCGGAAGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2811.0010100000
................................C-----------------AACAAT-TTCGGAAGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2411.0010100000
..AACGCTGTTGAACAG-----GGCGCTAACC................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..............................................................................................................................................................................................................................................................................................................................................................GAAATCGGAACGTTCGCT................1811.0010001000
..............................................................................................................................................................................................................................................................................................................................................................GAAATCGGAACGTTCGCTTC..............2011.0010100000
.............................ACCC-----------------AACAAT-TTCGGAAGG..............................................................................................................................................................................................................................................................................................................................1911.0010001000
.....................................................................................................................................................................................................................................................................................................................................................GTTAGTAACGAAATCGGAAC.......................2011.0010100000
..AACGCTGTTGAACAG-----GGCGCTAACCC-----------------AAC...........................................................................................................................................................................................................................................................................................................................................2911.0010100000
.....GCTGTTGAACAG-----GGCGCC....................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
............................AACCC-----------------AACAAT-TTCGGAAGGATGGA.........................................................................................................................................................................................................................................................................................................................2511.0010100000
............................................................................................................................................................................................................................................................................................................................................................ACGAAATCGGAACGTTCGCTTC..............2211.0010100000
.........................GCTAACCC-----------------AACAAT-TTCGGAAGGAT............................................................................................................................................................................................................................................................................................................................2511.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................GAACGTTCGCTTCAGTCGT........1911.0010100000
.....................................................................................................................................................................................................................................................................CACCCTG---TTC------G----CACC----GCGAATC-GC----.............................................................................2411.0010100000
..............................................................................................................................................................................................................................................................................................................................................................GAAATCGGAACGTTCGCTTCAGTCGTCT------2811.0010100000
droYak3
CCAACGCTGTTGAACCG-----GGAGCTAAGCC-----------------AAAAAT-TTCTGAAGGATGGAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCA-------------------------------------AGCTTTAATTTCGA-TAC-----TAACGCCC-TACT---GGCAGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTACCCACCCTG---TTC------T----CGCC----GCGAATC-GC----CAACTATAAAAACGCAAAGGCTGCAATTGATTGAGTTAGTAACGAAATCGGAACGTTCGCTTCAGTCGTCG------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
CCAACGCTGTTGAACCG-----GGA.......................................................................................................................................................................................................................................................................................................................................................................2014.00400310000000
..............................................................................................................................................................................................................................................................................................................................................................GAAATCGGAACGTTCGCTTCAGTCGTC.......2712.00200200000000
..AACGCTGTTGAACCG-----GGA.......................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000
.........................GCTAAGCC-----------------AAAAAT-TTCTGAAGGAT............................................................................................................................................................................................................................................................................................................................2512.00200200000000
.CAACGCTGTTGAACCG-----GGA.......................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000
.................................................................................................................................................................................................................................................................................................................................................................ATCGGAACGTTCGCTTCAGTC..........2111.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................TAACGAAATCGGAACGTTCGCTTC..............2411.00100100000000
..................................................AAAAAT-TTCTGAAGGATGGAAGC......................................................................................................................................................................................................................................................................................................................2311.00100100000000
........................................................................................................................................................................................................................................................................................................................ATAAAAACGCAAAGGCTGC.....................................................1911.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTT...............2211.00100100000000
.........TTGAACCG-----GGAGCTAAGCC-----------------AAAAA.........................................................................................................................................................................................................................................................................................................................................2411.00100100000000
............................AAGCC-----------------AAAAAT-TTCTGAAGGAT............................................................................................................................................................................................................................................................................................................................2211.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................GGAACGTTCGCTTCAGTCGT........2011.00100100000000
......................................................AT-TTCTGAAGGATGGAAGGT.....................................................................................................................................................................................................................................................................................................................2011.00100100000000
..AACGCTGTTGAACCG-----GGAGCT....................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................AATCGGAACGTTCGCTTCAGTC..........2211.00100100000000
.....................................................................................................................................................................................................................................................................CACCCTG---TTC------T----CGCC----GCGAA......................................................................................2011.00100100000000
................................................................................................................................................................................................................................................................................................................................................................AATCGGAACGTTCGCTTC..............1811.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTTCAGTC..........2711.00100100000000
..AACGCTGTTGAACCG-----GGAGC.....................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
....CGCTGTTGAACCG-----GGAGCT....................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
..AACGCTGTTGAACCG-----GGAGCTAAGCC-----------------..............................................................................................................................................................................................................................................................................................................................................2611.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCT................2111.00100100000000
.........................................................................................................................................................................................................................................................................................................................................GCAATTGATTGAGTTAGTAACGA................................2311.00100100000000
........................................................................................................................TATCA-------------------------------------AGCTTTAATTTCGA-TAC-----TAACGCC................................................................................................................................................................................................2911.00100100000000
.........................GCTAAGCC-----------------AAAAAT-TTCTGAAGGATG...........................................................................................................................................................................................................................................................................................................................2611.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAATCGGAACGTTCGCTTCAGT...........2611.00100100000000
droEug1
CCAACGCTGTCGAGCCG-----GGAGTTAAACCCCCCCAAAAAAAATCTAAAAAAT-T----AAGGATGGAAGGTGCGTGGTTTACC------CAG--ACCTTTA---------GAATCTTATCT-------------------------------------AGTTTTAATTTCGA-TAC-----TAACGCCAAGGCT---GGTAGTG------GGCTTATCGG----------------GTTGACAATTTTCTAATTAACTACAATG---T-C------G----TGCC----GCGAATGGGC----CAACTATATAAACGCAAAGGCTGCGAATGATTGGGTTAGTAACGAAATCGGAACCTTCGCTTCAGTCATCTG-----SizeHit CountTotal NormTotal
No Reads
droBia1
CCAACGCTGTCGAGCCG-----GGAGCTAAACC-----------------AAAAAT-T----AAGGATGAAAGGTGCGTGGCTTACC-----CCAG--ACC-TTA---------GAAATTTATCT-------------------------------------AGTTTTAATTTCGA-TAC---------------------------G------GGCTTATCTG----------------TCTGACAATTTTTTAATTACCCACTCTG---T-C------G----CGCC----GCGAATGGGC----CAACTATAAAAACGCAGAGGCTGCCATTGATTGGGTTAGTAAAGAAATCGGAACGTTCGCTTCAGTCGTCTGCC---SizeHit CountTotal NormTotal
No Reads
droTak1
CCAACGCTGTCGAGCCG-----GGAGCTAAACC-----------------AAAAAT-T----AAGGATGAAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATTTTATCT-------------------------------------AGTTTTAATTTCGA-TAC---------------------------G------GGCTTATCGG----------------GCTGACAATTTTTTAATTACCCGCTTTG---T-C------G----TGCC----GCGAGTGGGC----CAACTATAAAAACGCAGAGGCCTCCATTGATTGGGTTAGTAACGAAATCGGAACGTTCGCTTCAGTCGTC-------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAACGCTGTCGAGCTG-AG--GGAGCTTAACC-----------------AAAACT-T----AAGGATGGAAGGTGCGTGGTTTACC-----CCAG--TCC-CCA---------GAACCTTATCT-------------------------------------AGTTTTAATTGCGA-TAC-----TAACGCCT-TCTTGTCGACGACG------GGCTTATCTG----------------GCTGACAATTTTTTAATTAACCGCTCTG---C-C------GTGAGTGCC----GCGAATGGGC----CAACTATAAAAACCCAGAGGCTGCGATTGATTGGCTTAGTAACGAAATCGGAACGTTCGCTTCGCTAGTC-------SizeHit CountTotal NormTotal
No Reads
droRho1
CCAACGCGGTCGAACAG-AG--CGAGCTAAGCCC----------------AA-AAGTT----CAGGATGGAAGGTGCGTGGTTTACCCTTACCGGG--ACC-CTA---------GAGTCTTATCT-------------------------------------AGTTTTAATTGCGA-TAC-----TAACGCCT-TGTC---GGCGGCG------GGCTTATCTG----------------GCTGACAATTTTTTAATTAACCGCGCTG---C-C------G----AGCC----GCGAATGGGC----CAACTATAAAAACGCAGAGGCTGCGATTGATTGGGCTAGTTACGGAATCGGAACGTTCGCTTCAGTCGTC-------SizeHit CountTotal NormTotal
No Reads
droFic1
CCAACCTTGTTGATCTG-----GGAGCTAACC------------------AA-AAT-T--AAAAGGATGAAAGGTGCGTGGTTTACC-----CCAG--ACC-TTA---------GAATCTTATCT-------------------------------------AGTTTTAATTGCGA-TACA----TTACGCTG-TGGT---GGCGACG------GGCTTATCTG----------------GCTGACAATTTTTTAATTAACCACTCCG---C-C------G----AGCCG---GGGAATTGGC----CAACTATAAAAACGTTGAGGCTGCGATTGATTGGTTTAGTAACGGAAACGGATCGTTCGCTTCAGTCGGC---C---SizeHit CountTotal NormTotal
No Reads
droKik1
CCAACGCTGTTGAGCCG-----GGAGCTAACCCC----------------AAAAACTT----AAGGATGAAAGGTGCGTGCTTTACC-----CGAGAGACC-TTA---------GAATCTTATCT-------------------------------------AATTTTAATTGCGA-TAC-----TTACGGCC-TGTC---GACGGCGG----CGGCTTATCTG----------------GTTGACAATTT-TTAATTAACCGCTCTG---A-C------GAG--AGCCC---GGGGATGGGC----CAACTATAAAAACGCAGAGCCTGCGATCGAAAGGGTTAGTACCGGAATTGGAACGTTCGCTTCAGTCGATT--C---SizeHit CountTotal NormTotal
No Reads
droAna3
CCGAGGCTTTCGACAAG--G--AGTGCTAATCA------AAGA--------AAACC-C-C-ACAGGATGAAAGGTGTGTGGTTTTAC-----CGAGATACC-CCA---------GAATCTTATCATTTATTGCT---------------TACGGGGGAGTTGAATTTTAATTGCGA-TAC-----TAACGCGTTTGCT---GGCGGCG---TTTGGCTTATCTG----------------GCTGACAATTTTTTAATTAAG-ACCCTCCACCTCC-GGCCG----TACTC---GGGTATCGGC-TATAAACTATAAAAACACAGAGCCTGCCATCGAATGGGTTAGTTACGGAATCGAATCGGTG---------------C---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................AAACC-C-C-ACAGGATGAAAGC......................................................................................................................................................................................................................................................................................................................2015.005050000
.........................................GA--------AAACC-C-C-ACAGGATGAAAG.......................................................................................................................................................................................................................................................................................................................2112.002020000
..........CGACAAG--G--AGTGCTAATCA------AAGA--------AAACC-C-.....................................................................................................................................................................................................................................................................................................................................2912.002020000
.......................................AAGA--------AAACC-C-C-ACAGGATGAAAGC......................................................................................................................................................................................................................................................................................................................2412.002011000
...........GACAAG--G--AGTGCTAATCA------AA.......................................................................................................................................................................................................................................................................................................................................................2012.002002000
......................AGTGCTAATCA------AAGA--------AAACC-.......................................................................................................................................................................................................................................................................................................................................2012.002011000
....................................................AACC-C-C-ACAGGATGAAAG.......................................................................................................................................................................................................................................................................................................................1812.002020000
...................................................AAACC-C-C-ACAGGATGAAAG.......................................................................................................................................................................................................................................................................................................................1912.002020000
..........CGACAAG--G--AGTGCTAATCA------AAGA--------.............................................................................................................................................................................................................................................................................................................................................2312.002011000
....................................................AACC-C-C-ACAGGATGAAAGC......................................................................................................................................................................................................................................................................................................................1912.002020000
..........................................A--------AAACC-C-C-ACAGGATGAAA........................................................................................................................................................................................................................................................................................................................1912.002011000
........................................................................................................................................................................AATTGCGA-TAC-----TAACGCGTTTGCT---.......................................................................................................................................................................................2411.001010000
.............................ATCA------AAGA--------AAACC-C-C-ACAGGAT............................................................................................................................................................................................................................................................................................................................2211.001010000
...................G--AGTGCTAATCA------AAGA--------AAACC-C-.....................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................................................................................CGAATGGGTTAGTTACGGAA..............................2011.001001000
............................................................................................................................................................................................................................................................................................................................................ATCGAATGGGTTAGTTACGG................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................AATGGGTTAGTTACGGAATCGAATC.......................2511.001010000
.......................GTGCTAATCA------AAGA--------AAACC-C-C-ACAGGAT............................................................................................................................................................................................................................................................................................................................2811.001010000
......................AGTGCTAATCA------AAGA--------AAACC-C-.....................................................................................................................................................................................................................................................................................................................................2111.001010000
CCGAGGCTTTCGACAAG--G--A.........................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................ATTGCGA-TAC-----TAACGCGTTTGCT---GGC....................................................................................................................................................................................2611.001010000
..............AAG--G--AGTGCTAATCA------AAGA--------AAAC.........................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................CTAATCA------AAGA--------AAACC-C-C-ACAG...............................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................GA--------AAACC-C-C-ACAGGATGAAA........................................................................................................................................................................................................................................................................................................................2011.001001000
..............................................................................................................................................................................................................................................................................................ACTC---GGGTATCGGC-TATAAACC........................................................................2211.001010000
............................................................................................................................................................................................................................................................................................................................................................ACGGAATCGAATCGGTG---------------C---1811.001010000
..............................................................................................................................................................................................................................................................AATTAAG-ACCCTCCACCTCC-GGCC........................................................................................................2411.001010000
.............................................................ACAGGATGAAAGGTGTGTGGT..............................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................AGTTACGGAATCGAATCGGT....................2011.001100000
..................................................................................................................................................................................AC-----TAACGCGTTTGCT---GGCGGC.................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................AGCCTGCCATCGAATGGGT.........................................1911.001010000
............................AATCA------AAGA--------AAACC-C-C-ACAGGAT............................................................................................................................................................................................................................................................................................................................2311.001010000
..........CGACAAG--G--AGTGCTAATC................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..........CGACAAG--G--AGTGCTAATCA------AA.......................................................................................................................................................................................................................................................................................................................................................2111.001001000
.......TTTCGACAAG--G--AGTGCTAATCA------AA.......................................................................................................................................................................................................................................................................................................................................................2411.001010000
....GGCTTTCGACAAG--G--AGTGCT....................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................CA------AAGA--------AAACC-C-C-ACAGGATGAAAGC......................................................................................................................................................................................................................................................................................................................2611.001010000
..........................CTAATCA------AAGA--------AAACC-C-C-ACAGGAT............................................................................................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................................................................................ATGGGTTAGTTACGGAAC.............................1811.001010000
...............................CA------AAGA--------AAACC-C-C-ACAGGATGA..........................................................................................................................................................................................................................................................................................................................2211.001010000
..........CGACAAG--G--AGTGCTAATCA------AAGA--------A............................................................................................................................................................................................................................................................................................................................................2411.001010000
.......TTTCGACAAG--G--AGTGCTAATC................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......CTTTCGACAAG--G--AGTGCTAAT.................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................TACGGAATCGAATCGGTG---------------C---1911.001010000
..........................CTAATCA------AAGA--------AAACC-C-C-ACAGG..............................................................................................................................................................................................................................................................................................................................2311.001010000
............................AATCA------AAGA--------AAACC-C-C-ACAG...............................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................GTTACGGAATCGAATCGGT....................1911.001001000
...................................................................................................................................................................................C-----TAACGCGTTTGCT---GGCGGC.................................................................................................................................................................................2011.001010000
..............AAG--G--AGTGCTAATCA------AAGA--------A............................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................A--------AAACC-C-C-ACAGGATGAAAGC......................................................................................................................................................................................................................................................................................................................2111.001010000
...........GACAAG--G--AGTGCTAATCA------AAGA--------AAACC-C-.....................................................................................................................................................................................................................................................................................................................................2811.001010000
.......................................AAGA--------AAACC-C-C-ACAGGATGAAA........................................................................................................................................................................................................................................................................................................................2211.001010000
................................A------AAGA--------AAACC-C-C-ACAGGATG...........................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................GTTTGCT---GGCGGCG---TTTGGCC......................................................................................................................................................................2111.001010000
.......................GTGCTAATCA------AAGA--------AAACC-C-.....................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................AACC-C-C-ACAGGATGAAAGGTGTGTGG...............................................................................................................................................................................................................................................................................................................2611.001010000
.............................ATCA------AAGA--------AAACC-C-C-ACAGGATGAAA........................................................................................................................................................................................................................................................................................................................2611.001010000
............................AATCA------AAGA--------AAACC-C-C-ACAGGATGAAAG.......................................................................................................................................................................................................................................................................................................................2811.001010000
................................A------AAGA--------AAACC-C-C-ACAGGATGA..........................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................AGTTACGGAATCGAATCGGTG---------------C---2211.001010000
...............................................................................................................................................................................................................................................................ATTAAG-ACCCTCCACCTCC-............................................................................................................1911.001010000
........................................AGA--------AAACC-C-C-ACAGGATGA..........................................................................................................................................................................................................................................................................................................................1911.001010000
.........................GCTAATCA------AAGA--------AAACC-C-C-...................................................................................................................................................................................................................................................................................................................................1911.001010000
......CTTTCGACAAG--G--AGTGCC....................................................................................................................................................................................................................................................................................................................................................................1820.501010000
droBip1
CCGAGGCTTTCGACAAG--G--AGAGCTAATCA------AAGC--------AAAAC-CCCAAAAGGATGAAAGGTGTGTGGTTTTAC-----CGAAATACC-CCA---------GAATCTTATCGCT----------------------TTCGGGGAAGTTGAATTTTAATTGCGA-TAC-----TAACGCGTTTTCT---GGCGGCGGCATCTGGCTTATCTG----------------GCTGACAATTTTTTAATTAAG-ACCTTC---C-TACGGTGG----TGCTC---GGGGATGGGT-TAAGAACTATAAAAACACAGAGCCTGCCATTGAATGGGTTAGTAACGGAATCGAAACGGT--------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCAGCGCCACTGAC--GGGG--ACTACCAGTGC------GAGT--------ACAAT-TA--CAAGGATGAAAGGTGCGTGGTTTACC-----ATAG--TCC-GGGGACGGGAACAAATCTTATCGCTCGACTCTGACTCTGACTCCGACTTC---GACTCAGAATTTTAATTACGAATACGATATT-CTGCGT-TGCT---GCCGGAT------GGCTTATCTGCGGAGCTGCTGGAGTGTCTGACAATTTTTTAATTAAC-GCGCTG---C-CA-GGCTG----TGCTTGGCAGGGTTTGGCAGAGCGCCTATAAAAGCGCACAGCCAGCTTTTGGTCAGGCTAGTACCAGCATCG-----CTCTCTCAAGTGGAATATCGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
CCAGCGCCACTGAC--GGGG--A.........................................................................................................................................................................................................................................................................................................................................................................1916.0060120300000
.......CACTGAC--GGGG--ACTACCAGTGC------GA.......................................................................................................................................................................................................................................................................................................................................................2412.0020020000000
...............................................................................................................AACAAATCTTATCGCTCGACT............................................................................................................................................................................................................................................................2111.0010010000000
.....................................................................................................................................................................................................................................................................................................AGGGTTTGGCAGAGCGCCTATAAAAGC................................................................2711.0010010000000
.............................GTGC------GAGT--------ACAAT-TA--CAAGGATGA..........................................................................................................................................................................................................................................................................................................................2411.0010000100000
.......................................................................................................................................................................................................................................................................................................................................CAGCTTTTGGTCAGGCTAGTACCAGC...............................2611.0010010000000
......................................................................................................................................................................................................................................................................................CTG----TGCTTGGCAGGGTTTGGC.................................................................................2111.0010010000000
..............................................................................................................................................................................................................AT------GGCTTATCTGCGGAGCTGCC......................................................................................................................................................2211.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................TAGTACCAGCATCG-----CTCTCTCAAGTGG.........2711.0010010000000
.........................................GT--------ACAAT-TA--CAAGGATGAAAGGTT....................................................................................................................................................................................................................................................................................................................2411.0010010000000
.........CTGAC--GGGG--ACTACCAGTGC------GA.......................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
............................................................................................................................................................................................................................................................................................................................................................CCAGCATCG-----CTCTCTCAAGTGGA........2311.0010000000001
..AGCGCCACTGAC--GGGG--ACTACC....................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................ACCAGCATCG-----CTCTCTCAAGTGGA........2411.0010010000000
.......CACTGAC--GGGG--ACTACCAGC.................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...........GAC--GGGG--ACTACCAGTGC------GA.......................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.........................ACCAGTGC------GAGT--------ACAAT-TA--CA.................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.......CACTGAC--GGGG--ACTACCAGTGC------.........................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.....................................................AAT-TA--CAAGGATGAAAGGTTTC..................................................................................................................................................................................................................................................................................................................2230.3310010000000
droPer2
CCAGCGCCACTGAC--GGGG--ACTACCAGTGC------GAGT--------ACAAT-TA--CAAGGATGAAAGGTGCGTGGTTTACC-----ATAG--TCC-GGGGACGGGAACAAATCTTATCGCTCGACTCTGACTCTGACTCCGACTTC---GACTCAGAATTTTAATTACGAATACGATATT-CTGCGT-TGCT---GCCGGAT------GGCTTATCTGCGGAGCTGCTGGAGTGTCTGACAATTTTTTAATTATC-GCGCTG---C-CA-GGCTG----TGCTTGGCAGGGTTTGGCAGAGCGCCTATAAAAGCGCACAGCCAGCTTTTGGTCAGGCTAGTACCAGCATCG-----CTCTCTCAAGTGGAATATCGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................CATCG-----CTCTCTCAAGTGGAATATCGA.2616.006600000
..............................................................................................................................................CTCCGACTTC---GACTCAGA.............................................................................................................................................................................................................................1815.005500000
............................................................................................................................................GACTCCGACTTC---GACTCAGA.............................................................................................................................................................................................................................2014.004400000
...............................................................................................................................................................................................................T------GGCTTATCTGCGGAGCTGCT......................................................................................................................................................2114.004400000
................................................................................................................................................CCGACTTC---GACTCAGAATTTTAAT.....................................................................................................................................................................................................................2413.003300000
.............................................................................................................................................................................................................................................................................................................................................................CAGCATCG-----CTCTCTCAAGTG..........2013.003300000
........ACTGAC--GGGG--ACTACCAGT.................................................................................................................................................................................................................................................................................................................................................................1913.003003000
.......................................GAGT--------ACAAT-TA--CAAGGATG...........................................................................................................................................................................................................................................................................................................................1913.003300000
.........................................................................................................................................................................................................GCCGGAT------GGCTTATCTGCGGAGCTGCT......................................................................................................................................................2712.002200000
...............................................................................................................AACAAATCTTATCGCTCGACT............................................................................................................................................................................................................................................................2112.002200000
.......CACTGAC--GGGG--ACTACCAGTGC------GA.......................................................................................................................................................................................................................................................................................................................................................2412.002002000
..........................................................................................................................................................................................................................................................................................................................................................TACCAGCATCG-----CTCTCTCAAGT...........2212.002200000
..............................................................................................................................................CTCCGACTTC---GACTCAGAATTTTAATTAC..................................................................................................................................................................................................................2912.002200000
...................................................ACAAT-TA--CAAGGATGAAAGGTTT...................................................................................................................................................................................................................................................................................................................2312.002200000
............................................................................................................................................................................................................................................................................................................................................................CCAGCATCG-----CTCTCTCAAGTG..........2112.002200000
...............................GC------GAGT--------ACAAT-TA--CAAGGATG...........................................................................................................................................................................................................................................................................................................................2112.002200000
........................................................................................................................................CTCTGACTCCGACTTC---GACTCAGA.............................................................................................................................................................................................................................2412.002200000
...............................GC------GAGT--------ACAAT-TA--CAAGGA.............................................................................................................................................................................................................................................................................................................................1912.002200000
.......CACTGAC--GGGG--ACTACCAGT.................................................................................................................................................................................................................................................................................................................................................................2012.002002000
........................................................................................................................................................................................................................CTTATCTGCGGAGCTGCT......................................................................................................................................................1811.001100000
.....................................................................................................................................................................................................................................................................................................AGGGTTTGGCAGAGCGCCTATAAAAGC................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................G-----CTCTCTCAAGTGGAATATCGA.2211.001001000
.................................................................................................................................................................................................................................................................................................................................CACAGCCAGCTTTTGGTCAGGCTA.......................................2411.001001000
.....................................................AAT-TA--CAAGGATGAAAGGTTT...................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................CAGCATCG-----CTCTCTCAAGT...........1911.001001000
..............................................................................................................GAACAAATCTTATCGCTCGACTCT..........................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................ACCAGCATCG-----CTCTCTCAAGTG..........2211.001100000
....................................................................................................................................................................................................................................................................................................................................AGCCAGCTTTTGGTCAGGCT........................................2011.001001000
CCAGCGCCACTGAC--GGGG--AC........................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................GAACAAATCTTATCGCTCGACTCC..........................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................TATCGCTCGACTCTGACT......................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................ATCG-----CTCTCTCAAGTGGAATATCGG.2511.001100000
................................................................................................................................................................................................................................................................................................................................................................CATCG-----CTCTCTCAAGTGG.........1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................ATCG-----CTCTCTCAAGTGGAATATCGA.2511.001001000
.....................................................AAT-TA--CAAGGATGAAAGGT.....................................................................................................................................................................................................................................................................................................................1911.001001000
...........................................................................................................................................................................................................................................................................................................................................................ACCAGCATCG-----CTCTCTCAAGT...........2111.001001000
CCAGCGCCACTGAC--GGGG--ACTACCAGT.................................................................................................................................................................................................................................................................................................................................................................2711.001001000
..............................................................................................................................................................................................................................................................................................................................................................AGCATCG-----CTCTCTCAAGTGGAATATCGA.2811.001001000
...........................................................................................................................................................................................................CGGAT------GGCTTATCTGCGGAGCTGCT......................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................CCAGCATCG-----CTCTCTCAAGT...........2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................AGCATCG-----CTCTCTCAAGTGGA........2111.001001000
.................................................................................................................................................................................................................................................................................................................................................................ATCG-----CTCTCTCAAGTGGA........1811.001001000
...................................................ACAAT-TA--CAAGGATGAAAG.......................................................................................................................................................................................................................................................................................................................1911.001001000
......................................................................................................................................................................................................................GGCTTATCTGCGGAGCTGCT......................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................CTCTCAAGTGGAATATCGA.1911.001001000
.......................................................................................................................................................................................................................................................ATTTTTTAATTATC-GCGCTG---C-CA-............................................................................................................2311.001100000
................................................................................................................................................CCGACTTC---GACTCAGAATTTTAATTAC..................................................................................................................................................................................................................2711.001100000
............................................................................................................................................GACTCCGACTTC---GACTCAGG.............................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................CATCG-----CTCTCTCAAGTGGA........1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................CAGCATCG-----CTCTCTCAAGTGGAATATCGA.2911.001100000
...............................................................................................................................................................................................................T------GGCTTATCTGCGGAGCTGCC......................................................................................................................................................2111.001100000
..................................................................................................................AAATCTTATCGCTCGACT............................................................................................................................................................................................................................................................1811.001100000
.......................CTACCAGTGC------GAGT--------ACAAT-.......................................................................................................................................................................................................................................................................................................................................1911.001001000
.................................................................................................................................................................................................................................................................................................................................................................ATCG-----CTCTCTCAAGTGGAATAT....2211.001001000

Generated: 05/18/2015 at 08:40 PM