ID:

dsi_28592

Coordinate:

3l:8137095-8137152 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_8137017_8137094_+]; CDS [3l_8137017_8137094_+]; CDS [3l_8137153_8137584_+]; exon [3l_8137153_8137584_+]; intron [3l_8137095_8137152_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------################################################## TTGCCCGCCTGATACGCGATAATCTGCTGGAGAACTTGCAAGCCATCTCAGTGAGTTTCCGAACACCACCAATATAATTGGCCAATATATAGTGTATATCTCTCACAGCCCGTTTTGTTCATCAAAATCCAACCGGAGCTCGACTTGCTTATTCAATC ************************************************(((((.......((((..(((((...)))))..........))))......)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M023 head	M053 female body	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
.........TGATACGCGATAATCTTCTGGAGAACT..........................................................................................................................	27	1	1	2.00	2	0	0	0	2	0	0	0	0
.....................ATCTGCTGGAGAACTTGCAAGC...................................................................................................................	22	0	1	2.00	2	0	1	1	0	0	0	0	0
......................................................................................................TCACAGCCCGCTTTGTTGATCTA.................................	23	3	2	1.50	3	3	0	0	0	0	0	0	0
.......................CTGCTGGAGAACTTGCAAGCC..................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0
.................GATAATCTGCTGGAGAACTTGCAAGC...................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
..................ATAATCTGCTGGAGAACTTG........................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................TCACAGCCCGTTTTGATGATCTA.................................	23	3	2	0.50	1	1	0	0	0	0	0	0	0
......................................................................................................TCACAGCCAGTTTTGTTCAGCT..................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
....................................................................................................TCTCACAGCCAGCTTTGATCATC...................................	23	3	3	0.33	1	1	0	0	0	0	0	0	0
........................TGCTGGAGAACTTGC.......................................................................................................................	15	0	4	0.25	1	0	0	0	0	0	1	0	0
.....................ACCTCCTGGTGAACTTGCA......................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	1	0
...........ATACGCGAAACTCTGCTGC................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

AACGGGCGGACTATGCGCTATTAGACGACCTCTTGAACGTTCGGTAGAGTCACTCAAAGGCTTGTGGTGGTTATATTAACCGGTTATATATCACATATAGAGAGTGTCGGGCAAAACAAGTAGTTTTAGGTTGGCCTCGAGCTGAACGAATAAGTTAG ************************************************(((((.......((((..(((((...)))))..........))))......)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
............ATGCGCTACTAGAAGAC.................................................................................................................................	17	2	15	2.00	30	30	0	0	0	0	0
.........................................................................................................TTCGGGCAAAACAAGTAGTT.................................	20	1	1	1.00	1	0	0	1	0	0	0
...................ATTAGACGACCTCTTGAACGT......................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
........................................................................................................................TAGTGGTAGGTTGGCCTCGAGT................	22	3	3	0.33	1	0	0	0	1	0	0
...............................................................................................................................AGGTTGGACCCGAGCT...............	16	2	20	0.10	2	1	1	0	0	0	0
...................................................................................................GAGATTGTCGGCCAAA...........................................	16	2	20	0.05	1	0	0	0	0	0	1
...............................................................................................TATAGAGAGTCTCGTG...............................................	16	2	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................GTAGTTTTGGGTTGG........................	15	1	20	0.05	1	0	0	0	0	1	0

Generated: 04/24/2015 at 10:42 AM