ID:

dsi_28590

 Coordinate:

3r:4551733-4551882 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4551652_4551732_-]; CDS [3r_4551652_4551732_-]; intron [3r_4551733_4552953_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATCATGTATCGCGGTGTATGTGCTCCAGCTGCTGTTGTTCATTAAAGCCCAAACTCAAGAGCGTTGTTTCATTAATGGAGCTCACAAACAGAGGCTCCCAATTGGCGAGAGTGCACACAAACATAGTCATACACCATCGAGCACCCACCAACTTGCACCTTAGCCCATGGTTTACATGCTGATGCCTCTTAATTGCAGCTGAACTCGTGCCCCTAGTCGGATTCTCACCGCCCGTGCCTGCTCCATCC
**************************************************..........((((.(((((.....))))).)))).(((..((((((((......((((((.(((((...........((..........)).............)))))))).)))((((.....))))..)).))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.....................CTGATCCAGCTGCTGTTGTTC................................................................................................................................................................................................................ 21 2 3 2.67 8 8 0 0 0 0 0 0 0
.AATCATGTATCGCGGTGTATG.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TGCCTCTTAATTGCAGCTGAACTCG......................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.AATCATGTATCGCGGGGTATG.................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGCTGAACTCGTGCCCCTAGTCGGA........................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................TTACATGCAGATGCTTTTTAATT...................................................... 23 3 2 0.50 1 0 0 0 0 1 0 0 0
...................AACTGATCCAGCTGCTGTTGT.................................................................................................................................................................................................................. 21 3 19 0.42 8 8 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTCTCCGCCCGTGCC.......... 16 1 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................CTTACAAGCAGAGGCTCACA.................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................TTAACCGATGGTTTACAT....................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GATTCCGACCGCCCGTACC.......... 19 3 6 0.17 1 0 0 0 0 0 0 0 1
.................................................CCCAGACTCAAGAGC.......................................................................................................................................................................................... 15 1 8 0.13 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................AGTCGGATTCTCAGC................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0
.........ACCGCGGTGAATGTGTTCC.............................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTAGTACATAGCGCCACATACACGAGGTCGACGACAACAAGTAATTTCGGGTTTGAGTTCTCGCAACAAAGTAATTACCTCGAGTGTTTGTCTCCGAGGGTTAACCGCTCTCACGTGTGTTTGTATCAGTATGTGGTAGCTCGTGGGTGGTTGAACGTGGAATCGGGTACCAAATGTACGACTACGGAGAATTAACGTCGACTTGAGCACGGGGATCAGCCTAAGAGTGGCGGGCACGGACGAGGTAGG
**************************************************..........((((.(((((.....))))).)))).(((..((((((((......((((((.(((((...........((..........)).............)))))))).)))((((.....))))..)).))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.....................GACTAGGTCGACGACAACAAG................................................................................................................................................................................................................ 21 2 3 3.00 9 8 1 0 0
......................ACTAGGTCGACGACAACAAGA............................................................................................................................................................................................................... 21 2 3 1.33 4 0 4 0 0
....................AAACTAGGTCGACGACAACAAGA............................................................................................................................................................................................................... 23 3 5 0.20 1 0 1 0 0
....................TGACTAGGTCGACGACAACAAG................................................................................................................................................................................................................ 22 3 6 0.17 1 0 1 0 0
........................CAGGTCGACGACAGCAAG................................................................................................................................................................................................................ 18 2 9 0.11 1 0 1 0 0
...........................................................................................................................................................................................................TCGAGCATGGGGATCAG.............................. 17 2 11 0.09 1 0 0 1 0
....................................................................................................................................TGTGGTAGCTAGTGG....................................................................................................... 15 1 13 0.08 1 0 0 1 0
......................AATAGGTCGACGACAACAAGA............................................................................................................................................................................................................... 21 3 20 0.05 1 0 1 0 0
...............................ACGACAACAAGTACT............................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 09:40 AM