ID:

dsi_28583

Coordinate:

2r:5093607-5093756 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-19.2	-18.9	-18.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTAGCCAGAGGAACGCTGGGATTCACACAAGCTAAAAGGTTCTTAAATGAAATGCGAAGTAAATATTAATTTACAGAAGCAAAATTCATCTCATAGCTACATTTAGAATGCCCCGCGCAGTTACTCAGCCAAATGGGATTGAAATTCATCTGAAAGTCCCGCATGAAAACAATCTTAATAATTTCTCCACTCTTTTCAGGACTTTGACAAGGAGATCAGCTGCCACAAGATACACTCGCCCAGTAGCAG ************************************************...(((...((((((....))))))....)))...((((((((((.(((..........(((.....))).......)))...)))))).))))......(((((((........((((.............)))).......)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
...............................................................................................................................AGCCAAATGGGATTGAAATTCATCTGA................................................................................................	27	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................ATCGGGACTTTGACAAGGACA..................................	21	3	4	0.50	2	0	2	0	0	0
...................................................................................................................................................................................................................GGAGATCAGCTGCCAG.......................	16	1	5	0.20	1	0	0	1	0	0
...................................................................................................................................................................................................................TGAGATCAGCTGCCACCA.....................	18	2	7	0.14	1	0	0	1	0	0
.......GGAGGAACGCTGGGA....................................................................................................................................................................................................................................	15	1	12	0.08	1	0	0	0	0	1
.........................................................AAGTAAATGTTTATCTACAGA............................................................................................................................................................................	21	3	13	0.08	1	0	0	0	1	0
.................TGCGATTCACTCAGGCTAA......................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................AAGGAGATCAGGTGCCATT......................	19	3	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

AAATCGGTCTCCTTGCGACCCTAAGTGTGTTCGATTTTCCAAGAATTTACTTTACGCTTCATTTATAATTAAATGTCTTCGTTTTAAGTAGAGTATCGATGTAAATCTTACGGGGCGCGTCAATGAGTCGGTTTACCCTAACTTTAAGTAGACTTTCAGGGCGTACTTTTGTTAGAATTATTAAAGAGGTGAGAAAAGTCCTGAAACTGTTCCTCTAGTCGACGGTGTTCTATGTGAGCGGGTCATCGTC ************************************************...(((...((((((....))))))....)))...((((((((((.(((..........(((.....))).......)))...)))))).))))......(((((((........((((.............)))).......)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs
..............................................................................................................................................................AGGCGTACTTTTGTTGGAATTGT.....................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................AGTCCGGAAACTTTGCCTC...................................	19	3	20	0.85	17	0	17	0	0	0	0	0
...................................................................................TTAAGTAGAGTGTCG........................................................................................................................................................	15	1	6	0.17	1	0	0	0	0	1	0	0
....CGGTCACCTTGCGTCCCTAT..................................................................................................................................................................................................................................	20	3	9	0.11	1	0	0	1	0	0	0	0
...........................................................................................................TTACGAGGTGCGTCAAT..............................................................................................................................	17	2	9	0.11	1	0	0	1	0	0	0	0
....................................................................................................................................................................................................AGTCCGGAAACTTTTCCT....................................	18	2	11	0.09	1	0	0	0	1	0	0	0
...........................TGTTGGATTTTCCAACAAATT..........................................................................................................................................................................................................	21	3	11	0.09	1	0	0	0	0	0	1	0
........................GTGTGGTCGAGTTTCAAAGA..............................................................................................................................................................................................................	20	3	13	0.08	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................AGTCCGGAAACTTTTCCTCG..................................	20	3	16	0.06	1	0	0	0	1	0	0	0
....................................................................................................................................................TAGTCTTTCAGGCCGTA.....................................................................................	17	2	17	0.06	1	0	0	0	0	0	0	1
.............................................................................TTAGTTTTAAGTAGAATA...........................................................................................................................................................	18	2	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/23/2015 at 09:29 AM