ID:

dsi_28568

 Coordinate:

3l:7353365-7353514 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.7 -18.7 -18.7

Flybase annnotation

five_prime_UTR [3l_7353546_7353665_-]; CDS [3l_7353515_7353545_-]; exon [3l_7353515_7353665_-]; intron [3l_7352617_7353514_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. 2l:15029913-15029927 +
  2. dsi_28568  3l:7353437-7353451 -
  3. 3l:18154725-18154739 +
  4. 3r:4300016-4300030 -
  5. x:13738580-13738594 -
  6. x:17004656-17004670 -
  7. node_101820:8551-8565 +
  8. node_94882:1247-1261 -
  9. node_67895:2758-2772 +
  10. node_60657:287-301 +
  11. node_108581:104-118 -
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCACCGCTCATTGGCGCCATGCAACTCATGCTCCGTTTGAACCCAAAAAGTGAGTAGTGGCTAAAACATAATAAAATACGTTTAAATAGGTGTAGTATATTCGCTGGCATCAGAATTTAAATTTGAAAAGCCGCATAAATAATAGATTTTAATATTTTATATGAGCGGTAAAATTTTATTTGCATTGAGAAATAATGAAATGAATAGAGCTGCAATATCAATTACCTAAAACTGCTATCAATCAAAACG
**************************************************.......((((((.................((((((((.((((((((......))).)))))...))))))))......)))))).(((((((..(((((((...(((.....)))...))))))))))))))(((((.....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
.......................................................................................................................................................................................................AACGAATAGAGCTGC.................................... 15 1 11 0.55 6 6 0 0 0 0 0
..............................................................................................AGTATATTCGCTGGGATTAGG....................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................................................................................................CAAACGAATAGAGCTGC.................................... 17 2 20 0.35 7 7 0 0 0 0 0
......................................................................................................................................................................................................AAACGAATAGAGCTGCGA.................................. 18 2 10 0.30 3 3 0 0 0 0 0
..................................................................................TTCAATAGCTGTAGTATATG.................................................................................................................................................... 20 3 11 0.18 2 0 0 0 2 0 0
.........................................................................................................................................................................................................................................TTCTATCAATCAAAAC. 16 1 8 0.13 1 0 0 1 0 0 0
.................................................................................................................GAATTTAAATTTGAA.......................................................................................................................... 15 0 11 0.09 1 0 0 0 0 1 0
.........................................................................................................................................................................................................TGAATAGAGCTGCGA.................................. 15 1 11 0.09 1 1 0 0 0 0 0
..................................................GTGAGTCGTGGCTAA......................................................................................................................................................................................... 15 1 14 0.07 1 0 0 1 0 0 0
.....................................................................................AATAGGTGTAGAATA...................................................................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0
...................................................................................................................................................................................................AAAAAACGAATAGAGCTGCA................................... 20 3 20 0.05 1 1 0 0 0 0 0
............................ATGGTCCGTTTGAACTGAA........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

AGGTGGCGAGTAACCGCGGTACGTTGAGTACGAGGCAAACTTGGGTTTTTCACTCATCACCGATTTTGTATTATTTTATGCAAATTTATCCACATCATATAAGCGACCGTAGTCTTAAATTTAAACTTTTCGGCGTATTTATTATCTAAAATTATAAAATATACTCGCCATTTTAAAATAAACGTAACTCTTTATTACTTTACTTATCTCGACGTTATAGTTAATGGATTTTGACGATAGTTAGTTTTGC
**************************************************.......((((((.................((((((((.((((((((......))).)))))...))))))))......)))))).(((((((..(((((((...(((.....)))...))))))))))))))(((((.....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M053
female body
 M025
embryo
 SRR618934
dsim w501 ovaries
..............CGCGGTACGTTGAGTACG.......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
........................................................................................TTCACATAATATAAGCGA................................................................................................................................................ 18 2 6 0.33 2 0 2 0 0
..........................................................................................................CCCTAGTCTGAATTTTAAA............................................................................................................................. 19 3 20 0.10 2 0 0 2 0
......................................................................................AGTCCACATAATATAAGCGA................................................................................................................................................ 20 3 14 0.07 1 0 1 0 0
............................TACGAGTCTAACTTGTGTTTT......................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 05:51 AM