ID:

dsi_28555

 Coordinate:

3l:13701548-13701697 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.4 -14.1 -14.1

Flybase annnotation

exon [3l_13701698_13701971_+]; five_prime_UTR [3l_13701698_13701864_+]; intron [3l_13701361_13701697_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCTAGAAATTTCCATTCGCAGGCGAAAAGCGAATCCATAATTGATGTGAATGTGAAAAGCATATATCGAATCGAATGTTCTGGACTTGTTTGTCAAACGAAAAGAACAGATAGCAAGCCGACACGTGCGTGGCTGTGTGTTCAGTATACATTTTATCTAATTCACGTCTCCCTCTCTTTACAACTTGTATATTTTGCAGTAGCTGAAAAAAAAAACAAAGAAAACTCTGCGATCGCGTTATTCCGCCCC
**************************************************************************..((((((....((((((...))))))..)))))).(((((..((((...)).))...)))))..*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
...................................................................................................................AAGCCTACACGTGCGTTGCTGTG................................................................................................................ 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CAAAGAAAACTCTGCGATCGC............. 21 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0
..........................................................................AATGTTCTGGACTTGTTTGTC........................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................................GACACGTGCGTGGCTGTGT............................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................ATATCGAATCGAATGTTCTGG...................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TACAACTTGTATATTTTGCAG.................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................AAAGAAAACTCTGCGATCGCGTTATT....... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGAAAACTCTGCGATCGCGT........... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................AGCAAGCCGACACGTGCGTGG..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................TGTTTGTCAAACGAAAAGAACAGA........................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................GCGTGGCTGTGTGTTCA.......................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................CGACACGTGCGTGGCTGTGTGT............................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................TTCTGGACTTGTTTGTCAAAC....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................ATATCGAATCGAATGTTCTGGACT................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TTTGTCAAACGAAAAGAACAGATAGCAAGC................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............CCATTCGCAGGCGAAAAGCGA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TCTGCGATCGCGTTATTCCGC... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................TCGAATGTTCTGGACTTGTT............................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................ATCGAATGTTCTGGACTTGTT............................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................TGTTTGTCAAACGAAAAGAACAGATA......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AAAGAACAGATAGCAAGCCGA................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AACAAAGAAAACTCTGCGATCGCGTT.......... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................AGCGGATAGCAAGCCGACACG............................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................AACAAAGAAAACTCTGCGATC............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................AGATCGAATCGAATGTTCTGGACTT.................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................CTCTGCGATCGCGTTATTCCG.... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................GTTCAGGACTTGTTTG............................................................................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................AGAACTGATAGCAAGCT.................................................................................................................................. 17 2 19 0.42 8 0 1 4 0 0 0 0 3 0 0 0
...............................................................................................................................................................................................TTTTTGGAGGAGCTGAAAAAAAA.................................... 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAAAAAAACAAAGAGGACT....................... 19 2 20 0.30 6 4 0 0 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TTGGAGTACCTGAAGAAAAAAA.................................. 22 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................AGAACTGATAGCAAGC................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGCAGTCGCTAAAAAAAAAA................................... 20 2 10 0.20 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................AGAACTGATAGCAAGCTG................................................................................................................................. 18 2 10 0.20 2 0 0 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................AAAAAAAAACAAAGAGGACT....................... 20 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGACGTGCTAGGCTGTGT............................................................................................................... 18 3 20 0.15 3 0 0 0 2 0 0 0 0 0 0 1
......................................................................................................GAGAACTGATAGCAAGC................................................................................................................................... 17 2 14 0.14 2 0 0 0 0 0 0 0 2 0 0 0
..................................................................TCGAGTGGCATGTTCTGGAC.................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................TAGTTCAGGACTTGTTTGT............................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 1 0 0 0 1
..................................................................................................................................................................................................TTTCAGCAGCTGTAAAAAAAA................................... 21 3 20 0.10 2 0 0 0 0 0 0 0 1 1 0 0
..................................................................................................................................................................................................TTGTAGTATCTCAAAAAAAAAA.................................. 22 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTGCAATCGTTGAAAAAAAAA................................... 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................TTCTGGTCTTGGTTGTAAAA........................................................................................................................................................ 20 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
...................CAGGCGATAAGCGAATCGG.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGGAGACGCTGAAAAAAAAAA.................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................TTCCTATAGCTGAAAAAAAAA................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................TTTGGAGTAGTGGAAAAAAA..................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCGATCTTTAAAGGTAAGCGTCCGCTTTTCGCTTAGGTATTAACTACACTTACACTTTTCGTATATAGCTTAGCTTACAAGACCTGAACAAACAGTTTGCTTTTCTTGTCTATCGTTCGGCTGTGCACGCACCGACACACAAGTCATATGTAAAATAGATTAAGTGCAGAGGGAGAGAAATGTTGAACATATAAAACGTCATCGACTTTTTTTTTTGTTTCTTTTGAGACGCTAGCGCAATAAGGCGGGG
***************************************************************************************************************..((((((....((((((...))))))..)))))).(((((..((((...)).))...)))))..************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 GSM343915
embryo
...........................................................................................ACAGTTTGCTTTTCTTGTCT........................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAGACGCTAGCGCAATAA....... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................TAAGTGCAGAGGAATAGGAATGT................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................GGTTAAGTGCAGAGGGAGAGAA....................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................TTGAGACGCTAGCGCAATAAG...... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................ACGCACCGACACACAAGT.......................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................TCTTTTGAGACGCTAGCGCAA.......... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................TTGCTTTTCTTGTCTATC........................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................TACAAGACCTGAACAAACAGT.......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................GCACACAAGTCTTATGTTAAAT.............................................................................................. 22 3 5 0.20 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TTCTATTTCTTTTGAGACG................... 19 2 10 0.10 1 0 0 0 0 0 0 0 1
.........................................................................................................................................................AATAGATTAAGTGGA.................................................................................. 15 1 12 0.08 1 0 0 1 0 0 0 0 0
...................................................................................................CTTTTCATGTCTATGGTT..................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 1 0 0 0
.......................................................................AGCTTAGAAGTCCTGAGC................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................TGGCTTAGCTTACAA.......................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:13701498-13701747 + dsi_28555 CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATACATTTTATCTAATT-CACGTCTCCCTCTCTTTACAACTTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-AAAAAAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTA-TTCCGCCCC---------
droSec2 scaffold_0:6176664-6176912 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATACATTTTATCTAATT-CACGTCTCCCTCTCTTTACAACTTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-A-AAAAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTA-TTCCGCCCC---------
dm3 chr3L:14030378-14030627 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATACATTATATCTAATT-CACGTCTCCCTCTCTTTACAACTTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-AAAAAAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTG-TTCCGCCCC---------
droEre2 scaffold_4784:14020979-14021225 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCAAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTTTGTG-----TTCAGTACATATTTTATCTAATT-CCCATCTCCCTCTCTTTACAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-A---AAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTG-TTCCGCCCC---------
droYak3 3L:14117537-14117780 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTA-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATAAATTATATCTAATA-CCCGTCTCCCTCTCTTTACAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAAAA-----ACAAAG--A--AAA---------C--TGCGATCGC--------GTTG-TTCCGCCCC---------
droEug1 scf7180000409456:216464-216706 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCAAAATCCATAATTGATGTGAATGTGAAAAAAAACATATA-----TCGAATCGAATGTTCTGGACTTTTTTTGCCAAACGAAAA-G----AACAGATAGCAGGCCGACACGTGCGTGC----GTG-----TTCAATATATATTTTATCTAATATCCCGTCTC--TCTCGTTGAAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAAA--------CTCAGCGATCAC--------G----TTCCGCCCC---------
droBia1 scf7180000302428:5879671-5879935 - CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCGTATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAACC-G----AGCAGATAGCAAGCCGACACGTGCGTGGCTCTGTGTGTTGTTCAACAAACATTTTATCTAATTCTCCGTCAC--TCACATTGAAACTTGTACCC-----CTATATA-----TATTT---TGCAGTA----------------GCTGGAA-C-----ACAAAG--A--GAAC---GAGAACTCTGCGATCGC--------GTTG-TTACGCCCC---------
droTak1 scf7180000415667:75737-75978 - CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAACGTTCTGGACTTG-TTTGTCAATCGAAAA-G----AGCAGATAGCAGGCCGACACGTGCGTGGCTGTGTG-----TTTGACATATATTTTATCTAATTCCCCGTCTCCC--TCTTTGAAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAA-----------CGGCGATCGC--------GTTG-TTCCGCCCC---------
droEle1 scf7180000491255:2486729-2486962 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCGAAATCCATAATTAATGTGAATGTGAA---AAGCATATA-----TCGAATCGAAAGTTCTGGGCTTG-TTTGTCAAACAAAAA-G----AACAGATAGCAAGCCGACACGTGTGTGC--------------CAGTATACATTTTATCTAATT-CCTGTCTC--TATCTTTGAA----------------TATGTA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAA---------TTCAGCGATCGC--------GTTG-TTCCGCCCC---------
droRho1 scf7180000760202:59712-59945 - CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCAAAATCCATAATTAATGTGAATGTGTA---AAGCATATA-----TCGAATCGAATGTTCTGGGCTTG-TTTGTAATACAAAAA-G----AGCAGATAGCAAGCCGACACATGTGTGC--------------CAGTATATTTTTTATCTAATT-CCCGTCTC--TATCTTTGAA----------------TATATA-----TATTT---TGCAGTA----------------GCTGAAA-A-----ACAAAG--A--AAA---------TTAAGCGATCGC--------GTTG-TTCCGCCTC---------
droFic1 scf7180000453784:351929-352150 + CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCGAAATCCATAATTAATGTGAATGTGAA---AAGCATATA-----TCGTATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAAAG----AATAGATAGCAAGTCGACACGTGTGTGC-------------CCAGTATATATTTTATCTAATT-T-----------TCT--------------------AAAAAAA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAA---------CACAGCAA-CGC--------GTTG-TGCCGCCCC---------
droKik1 scf7180000302686:585556-585807 + CGCTAGAAATTTCCATTCTCAGGCG----------AAAACCGAAATCCATAATTAATGTGAATGTGAAA--AAGCATATA-----TCGAATCGAACGTTCTGGACTTA-ATTGTCAAACAAAAA-G----ACCATATAGCCAGCCGACACGTGCGTGCCTGAGTG-----TTTAGTACATATTTTATCTAATT-CCCGTCTCTCTATCTGGGT----------------ACACATA-----TATTT---TGCAGTA-TCAGT---------TGCTGGAA-A-----ACAAAG--A--AAA---------CTGAGCGATCGC--------GTTG-TTCCGCCCC---------
droAna3 scaffold_13337:5018188-5018439 - CGCTAGAAATTTCCATTCCCAGGCAACAAAAAAAAAAAAACG-AATCCATAATTGATGTGAAAG-------AAACAGAAA-----CTAAATCGAATGTTCTGGAGTTA-ATTGTCAAACAAAAA-A-------------GGGGTCGAGACGCTAGTGGATGT-------------TGTATATTTTATCTAATT-CTCGTTTCTGTGTGTGT--------------------GTATA-----TATTT---TGCAGTCATCACTA-TTCTCT-TGGT-----------ACAAAG--A--AAAACGCCA---GCCAGCGATCGCCAACACACACAG-TTCCGCCCC---------
droBip1 scf7180000396371:348579-348812 - CGCTAGAAATTTCCATTCCCAGGCA----------AAAACCG-AATCCATAATTGATGTGAAAG-------AAAC--ACA-----CTAAATCGAATGTTCTGGAGTTA-ATTGTCAAACAAAAA-G--CAAGCTGATAGCAAGCT------C-------------------TGGATATATATTTTATCTAATT-C---TCTCTCTCTGTTTGTGT--------------GTGTATA-----TATTTTATTGCAGTA-CA-------------ACTGGTA--------CAAAGAAAAAAAA-A-GCA---GCCAGCGATCGCTAAC----ACAG-TTCCGCCCC---------
dp5 XR_group6:4701053-4701288 + CGCTAGAAAGTTCGATTCACGAGCG----------AAAACCA-AATCCATAATTGATGTG------AA---AAGTGTACA-----TCGAGTAGAAATTTCTGGATTTA-TTTGTCAA-CGAAAT-GTTGAAACTGA------AACGAAACTTTCGTGT-----------------TGTATATTTTATCTAATT-CCTGGCTTC---TCT--------------------GCGTATC-----TATTT---TGCAGTA-TTGGTGTTTGTCCGAGCTTGAA-A-----ATAAAG--A--AAAAT-TGA---GAGTGCGAT------------------CCGCCCCGTTCTGTTC
droPer2 scaffold_9:3001874-3002109 + CGCTAGAAAGTTCGATTCACGAGCG----------AAAACCA-AATCCATAATTGATGTG------AA---AAGTGTACA-----TCGAGTAGAAATTTCTGGATTTA-TTTGTCAA-CGAAAT-GTTGAAACTGA------AACGAAACTTTCGTGT-----------------TGTATATTTTATCTAATT-CCTGGCTTC---TCT--------------------GCGTATC-----TATTT---TGCAGTA-TTGGTGTTTGTCCGAGCTTGAA-A-----ATAAAG--A--AAAAT-TGA---GAGTGCGAT------------------CCGCCCCGTTCTGTTC
droVir3 scaffold_13049:18302788-18302959 + AG--------------------------------------CA-AATCCATAATTAATGGAAA---AAA---ATGCCTAAA-----TCAAA--GGAAATTCTGGAATCA-TATGTCAATTGAAAT-A--------------AAATTGACGCGTGTGTGCGTGTTTG-----TTTGGTG-ATG-TTGAACTAATT-TTC---------------------------------------TGTTTTCTTT---TACAGTT----------------GCTGAAA-G-----AAA-AG--A-ATAA------------AACAAA----------------AGCCGCCCCA--------
droMoj3 scaffold_6680:19085980-19086165 + C-------------------AGCCC----------AAAGGCA-AATTCATAATTGATG-GAATAT--------GCACAAA-----TCTAA---ATAATTTTGGACTCT-TCTGTCAATTAT---------------TATAAAATTGACGACTGTGTTTCTATATA-----TACATTGAAAA------------------TATT--------TGAGCTAA-----TATTA-------TTTTCTCTCT---TACAGTT----------------GCTGAGA-A-TAAAACAGAG--A--A---------------ACAGTCGC--------CCTA-TTA--ATAT---------
droGri2 scaffold_15110:9341615-9341820 - CA-----------------CAGCCC----------ACCAACA-AATCCATAATTA---TCAATGTGAA---AA---TGCCCCAAATCGAA--GGCTACTCTCAAATCA-AATACCATTTGAAAT-A--------AA------T--------TTCATGCCTCTGTG-----TTGTGTGTGTATCTC----AATT-GCTGACTTT--------AATACTAA-----TTTTA-----CATATTTTATCT---TACAGTT----------------GCTGAAA-A-----ACAGAA--AAGCAA---------AATAGCCA-CAC--------AGAGAAGCCG-CCC---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATACATTTTATCTAATT-CACGTCTCCCTCTCTTTACAACTTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-AAAAAAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTA-TTCCGCCCC---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................CAAAG--A--AAA---------CTCTGCGATCGC--------.......................2112.00200000000000011000
.............................................................................................AATGTTCTGGACTTG-TTTGTC.............................................................................................................................................................................................................................................2112.00220000000000000000
.................................................................................................................................................GACACGTGCGTGGCTGTGT............................................................................................................................................................................................1911.00100100000000000000
.............................................................................ATA-----TCGAATCGAATGTTCTGG.........................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................TACAACTTG---------------TA-----TATTT---TGCAG..................................................................................................2111.00100000001000000000
................................................................................................................................................................................................................................................................................................AAAG--A--AAA---------CTCTGCGATCGC--------GTTA-TT................2611.00100000010000000000
.................................................................................................................................................................................................................................................................................................AAG--A--AAA---------CTCTGCGATCGC--------GT.....................2111.00101000000000000000
.........................................................................................................................................AGCAAGCCGACACGTGCGTGG..................................................................................................................................................................................................2111.00100000000010000000
..........................................................................................................TG-TTTGTCAAACGAAAA-G----AACAGA........................................................................................................................................................................................................................2411.00100000000001000000
........................................................................................................................................................GCGTGGCTGTGTG-----TTCA..................................................................................................................................................................................1711.00100000000001000000
................................................................................................................................................CGACACGTGCGTGGCTGTGTG-----T.....................................................................................................................................................................................2211.00110000000000000000
.................................................................................................TTCTGGACTTG-TTTGTCAAAC.........................................................................................................................................................................................................................................2111.00100000010000000000
.............................................................................ATA-----TCGAATCGAATGTTCTGGACT......................................................................................................................................................................................................................................................2411.00101000000000000000
.............................................................................................................TTTGTCAAACGAAAA-G----AACAGATAGCAAGC................................................................................................................................................................................................................3011.00100000010000000000
............CCATTCGCAGGCG----------AAAAGCG-A....................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
......................................................................................................................................................................................................................................................................................................................TCTGCGATCGC--------GTTA-TTCCGC............2111.00100000000100000000
..........................................................................................TCGAATGTTCTGGACTTG-TT.................................................................................................................................................................................................................................................2011.00100000001000000000
.........................................................................................ATCGAATGTTCTGGACTTG-TT.................................................................................................................................................................................................................................................2111.00100000000100000000
..........................................................................................................TG-TTTGTCAAACGAAAA-G----AACAGATA......................................................................................................................................................................................................................2611.00100100000000000000
.........................................................................................................................AAA-G----AACAGATAGCAAGCCGA.............................................................................................................................................................................................................2111.00100000000100000000
.............................................................................................................................................................................................................................................................................................AACAAAG--A--AAA---------CTCTGCGATCGC--------GTT....................2611.00101000000000000000
.............................................................................................................................................................................................................................................................................................AACAAAG--A--AAA---------CTCTGCGATC.................................2111.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................CTCTGCGATCGC--------GTTA-TTCCG.............2111.00100000010000000000
droSec2
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATACATTTTATCTAATT-CACGTCTCCCTCTCTTTACAACTTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-A-AAAAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTA-TTCCGCCCC---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................AAG--A--AAA---------CTCTGCGATCG................................1811.0010010
.....................................................TGATGTGAATGTGAA---AAGCATATA-----TC.........................................................................................................................................................................................................................................................................2611.0010010
.......................................................................................................................................................................................................................................................................................................................CTGCGATCGC--------GTTA-TTCCGCCCC---------2311.0010001
......................................................GATGTGAATGTGAA---AAGC.....................................................................................................................................................................................................................................................................................1811.0010010
............................................................................................................................................AAGCCGACACGTGCGTGGCTGTGTG-----......................................................................................................................................................................................2511.0010010
.......AATTTCCATTCGCAGGCG----------AA...........................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................................................................................................................................................AACAAAG--A--AAA---------CTCTGCGATCGC--------.......................2311.0010010
.................................................................................................................................................................................................................................................................................................AAG--A--AAA---------CTCTGCGATCGC--------GT.....................2111.0010100
.............................................................................................................................................................................................................................................................................................AACAAAG--A--AAA---------CTCTGCG....................................1811.0010010
dm3
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATACATTATATCTAATT-CACGTCTCCCTCTCTTTACAACTTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-AAAAAAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTG-TTCCGCCCC---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................................................................................................................................................................................................AACAAAG--A--AAA---------CTCTGCGATCGC--------GTTG-TT................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AAA-G----AACAGATAGCAAGCCGA.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CGAAAA-G----AACAGATAGCAAGCC...............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GACACGTGCGTGGCTGTGTG-----......................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................GTGCGTGGCTGTGTG-----TTC...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AAACAAAG--A--AAA---------CTCTGCGATCGC--------GTT....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AGCG-AATCCATAATTGATGTGA...................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................TT---TGCAGTA----------------GCTGAAA-AA......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................................................................TA-----TCGAATCGAATGTTCTGGACTTG-...................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................TGAA---AAGCATATA-----TCGAATCG...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................CGTGCGTGGCTGTGTG-----TTCAGT................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ACGTGCGTGGCTGTGTG-----TTC...................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AATCCATAATTGATGTGAATG................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAAATTTCCATTCGCAGGCG----------A............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................GTGCGTGGCTGTGTG-----TTCAG.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........ATTTCCATTCGCAGGCG----------A............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................A---------CTCTGCGATCGC--------GTTG-TTCCGCCCC---------2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................AATTGATGTGAATGTGAA---AAGCATATA-----...........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TACATTATATCTAATT-CACGT.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AA---------CTCTGCGATCGC--------GTTG-TTCCGCCC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................TATATCTAATT-CACGTCTCCC....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................A---------CTCTGCGATCGC--------GTTG-TTCC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................TGTGAATGTGAA---AAGCATATA-----...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AACGAAAA-G----AACAGATAGCAA..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AA---------CTCTGCGATCGC--------GTTG-TTC...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCTGCGATCGC--------GTTG-TTCCGCCC..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AACAGATAGCAAGCCGACACGTGCGTGG..................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................TATATCTAATT-CACGTCTCC.....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CAAGCCGACACGTGCGTGGC.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GAATCGAATGTTCTGGACTTG-T..................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GAAAA-G----AACAGATAGCAAG.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................ATA-----TCGAATCGAATGTTCTGGA........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................CAAGCCGACACGTGCGTGGCTG...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GCAAGCCGACACGTGCGTGGCT................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AAA---------CTCTGCGATCGC--------GTTG-TTCCGCCCC---------2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGATGTGAATGTGAA---AAGCA....................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CTCTGCGATCGC--------GTTG-TTCCG.............2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................G--A--AAA---------CTCTGCGATCGC--------GTTG-..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCAGGCG----------AAAAGCG-AATCCATAATTGAT.......................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................TGATGTGAATGTGAA---AAGCATA..................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AATCGAATGTTCTGGACTTG-TTTG...............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................CAAAG--A--AAA---------CTCTGCGATCGC--------GTT....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................G----AACAGATAGCAAGCCGA.............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ACGTGCGTGGCTGTGTG-----TTCAGTA...............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................CGTCTCCCTCTCTTTACAACT.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CTGCGATCGC--------GTTG-TTCCGCC...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CGACACGTGCGTGGCTGTGTG-----T.....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CTGCGATCGC--------GTTG-TTCCGCCC..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCAAATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTTTGTG-----TTCAGTACATATTTTATCTAATT-CCCATCTCCCTCTCTTTACAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAA-A---AAACAAAG--A--AAA---------CTCTGCGATCGC--------GTTG-TTCCGCCCC---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................ATATA-----TCAAATCGAATGTTCTGGA........................................................................................................................................................................................................................................................2413.0030000003
..............................................................................................................................................................................................................................................................................................ACAAAG--A--AAA---------CTCTGCGATCGC--------GTTT-..................2611.0011000000
..............................................................................................ATGTTCTGGACTTG-TTTG...............................................................................................................................................................................................................................................1811.0010000010
..........................................................................................................................................................................................................................................................................................................AA---------CTCTGCGATCGC--------GTTG-TTCCGCCC..........2611.0010100000
...................................................................................................................................................................................................................................................................................................G--A--AAA---------CTCTGCGATCGC--------GTT....................2011.0010000100
................................................................................................................................................................................................................TTTACAAATTG---------------TA-----TATTT---TGCAG..................................................................................................2311.0011000000
droYak3
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAATGTTCTGGACTTA-TTTGTCAAACGAAAA-G----AACAGATAGCAAGCCGACACGTGCGTGGCTGTGTG-----TTCAGTATAAATTATATCTAATA-CCCGTCTCCCTCTCTTTACAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGAAAAA-----ACAAAG--A--AAA---------C--TGCGATCGC--------GTTG-TTCCGCCCC---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................ACAAAG--A--AAA---------C--TGCGATCGC--------GTTG-TT................2611.00100000010000
...............................................................................................................................................................................................................................................................................................CAAAG--A--AAA---------C--TGCGATCGC--------GTTG-TTC...............2611.00100100000000
....................................................................................................................................................ACGTGCGTGGCTGTGTG-----TTCAG.................................................................................................................................................................................2211.00101000000000
................................................................................................................................................................................................................................................................................................AAAG--A--AAA---------C--TGCGATCGC--------GTT....................2111.00100000010000
........................................................................................................................................................................................................................................................................................A-----ACAAAG--A--AAA---------C--TGCGATC.................................1911.00100100000000
................................................................................................................................................CGACACGTGCGTGGCTGTGT............................................................................................................................................................................................2011.00110000000000
droEug1
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCAAAATCCATAATTGATGTGAATGTGAAAAAAAACATATA-----TCGAATCGAATGTTCTGGACTTTTTTTGCCAAACGAAAA-G----AACAGATAGCAGGCCGACACGTGCGTGC----GTG-----TTCAATATATATTTTATCTAATATCCCGTCTC--TCTCGTTGAAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAAA--------CTCAGCGATCAC--------G----TTCCGCCCC---------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCGTATA-----TCGAATCGAATGTTCTGGACTTG-TTTGTCAAACGAACC-G----AGCAGATAGCAAGCCGACACGTGCGTGGCTCTGTGTGTTGTTCAACAAACATTTTATCTAATTCTCCGTCAC--TCACATTGAAACTTGTACCC-----CTATATA-----TATTT---TGCAGTA----------------GCTGGAA-C-----ACAAAG--A--GAAC---GAGAACTCTGCGATCGC--------GTTG-TTACGCCCC---------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCG-AATCCATAATTGATGTGAATGTGAA---AAGCATATA-----TCGAATCGAACGTTCTGGACTTG-TTTGTCAATCGAAAA-G----AGCAGATAGCAGGCCGACACGTGCGTGGCTGTGTG-----TTTGACATATATTTTATCTAATTCCCCGTCTCCC--TCTTTGAAAATTG---------------TA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAA-----------CGGCGATCGC--------GTTG-TTCCGCCCC---------SizeHit CountTotal NormTotal
No Reads
droEle1
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCGAAATCCATAATTAATGTGAATGTGAA---AAGCATATA-----TCGAATCGAAAGTTCTGGGCTTG-TTTGTCAAACAAAAA-G----AACAGATAGCAAGCCGACACGTGTGTGC--------------CAGTATACATTTTATCTAATT-CCTGTCTC--TATCTTTGAA----------------TATGTA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAA---------TTCAGCGATCGC--------GTTG-TTCCGCCCC---------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCAAAATCCATAATTAATGTGAATGTGTA---AAGCATATA-----TCGAATCGAATGTTCTGGGCTTG-TTTGTAATACAAAAA-G----AGCAGATAGCAAGCCGACACATGTGTGC--------------CAGTATATTTTTTATCTAATT-CCCGTCTC--TATCTTTGAA----------------TATATA-----TATTT---TGCAGTA----------------GCTGAAA-A-----ACAAAG--A--AAA---------TTAAGCGATCGC--------GTTG-TTCCGCCTC---------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCTAGAAATTTCCATTCGCAGGCG----------AAAAGCGAAATCCATAATTAATGTGAATGTGAA---AAGCATATA-----TCGTATCGAATGTTCTGGACTTG-TTTGTCAAACGAAAAAG----AATAGATAGCAAGTCGACACGTGTGTGC-------------CCAGTATATATTTTATCTAATT-T-----------TCT--------------------AAAAAAA-----TATTT---TGCAGTA----------------GCTGGAA-A-----ACAAAG--A--AAA---------CACAGCAA-CGC--------GTTG-TGCCGCCCC---------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCTAGAAATTTCCATTCTCAGGCG----------AAAACCGAAATCCATAATTAATGTGAATGTGAAA--AAGCATATA-----TCGAATCGAACGTTCTGGACTTA-ATTGTCAAACAAAAA-G----ACCATATAGCCAGCCGACACGTGCGTGCCTGAGTG-----TTTAGTACATATTTTATCTAATT-CCCGTCTCTCTATCTGGGT----------------ACACATA-----TATTT---TGCAGTA-TCAGT---------TGCTGGAA-A-----ACAAAG--A--AAA---------CTGAGCGATCGC--------GTTG-TTCCGCCCC---------SizeHit CountTotal NormTotal
No Reads
droAna3
CGCTAGAAATTTCCATTCCCAGGCAACAAAAAAAAAAAAACG-AATCCATAATTGATGTGAAAG-------AAACAGAAA-----CTAAATCGAATGTTCTGGAGTTA-ATTGTCAAACAAAAA-A-------------GGGGTCGAGACGCTAGTGGATGT-------------TGTATATTTTATCTAATT-CTCGTTTCTGTGTGTGT--------------------GTATA-----TATTT---TGCAGTCATCACTA-TTCTCT-TGGT-----------ACAAAG--A--AAAACGCCA---GCCAGCGATCGCCAACACACACAG-TTCCGCCCC---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................CGCCA---GCCAGCGATCGCCAAC...........................2112.002110000
.........................................................................................................................................................................................................................................................................................................AAAACGCCA---GCCAGCGATCGC...............................2111.001010000
..........................................................................................................................AA-A-------------GGGGTCGAGACGCTAGTG...................................................................................................................................................................................................2111.001001000
............................................................................................................................................................................................TAATT-CTCGTTTCTGTGTGTGC--------------------.........................................................................................................................2211.001010000
...........................................................................................................................................................................................................................................................................................................................GATCGCCAACACACACAG-TTCCGCC...........2511.001010000
..................................................................................................................................................................................................................................................................................................AG--A--AAAACGCCA---GCCAGCGAT..................................2111.001010000
................................................................................................................................................................................................................................................................................GGT-----------ACAAAG--A--AAAACGCCA---GCCAGCG....................................2611.001100000
................................................................................................................................................................................................................................................................................................................CA---GCCAGCGATCGCCAAC...........................1811.001010000
............................................................................................................................................................................................................................................................................................................ACGCCA---GCCAGCGATCGCC..............................1911.001100000
................................................................................................................................................................................................................................................................................................................CA---GCCAGCGATCGCCAACACACACAG-TT................2811.001100000
.........................................................................................................................................................................................................................................................................................................AAAACGCCA---GCCAGCGATCGCCA.............................2311.001010000
.................................................................................................................................................................................................................................................................................GT-----------ACAAAG--A--AAAACGCCA---GCCAGCGAT..................................2711.001010000
...........................................................................................................................................................................................................................................................................................................AACGCCA---GCCAGCGATCGCCAACAC.........................2511.001100000
.....................................................................................CTAAATCGAATGTTCTGGAGT......................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................................................................GTGTGTGT--------------------GTATA-----TATTT---.......................................................................................................1830.331000001
droBip1
CGCTAGAAATTTCCATTCCCAGGCA----------AAAACCG-AATCCATAATTGATGTGAAAG-------AAAC--ACA-----CTAAATCGAATGTTCTGGAGTTA-ATTGTCAAACAAAAA-G--CAAGCTGATAGCAAGCT------C-------------------TGGATATATATTTTATCTAATT-C---TCTCTCTCTGTTTGTGT--------------GTGTATA-----TATTTTATTGCAGTA-CA-------------ACTGGTA--------CAAAGAAAAAAAA-A-GCA---GCCAGCGATCGCTAAC----ACAG-TTCCGCCCC---------SizeHit CountTotal NormTotal
No Reads
dp5
CGCTAGAAAGTTCGATTCACGAGCG----------AAAACCA-AATCCATAATTGATGTG------AA---AAGTGTACA-----TCGAGTAGAAATTTCTGGATTTA-TTTGTCAA-CGAAAT-GTTGAAACTGA------AACGAAACTTTCGTGT-----------------TGTATATTTTATCTAATT-CCTGGCTTC---TCT--------------------GCGTATC-----TATTT---TGCAGTA-TTGGTGTTTGTCCGAGCTTGAA-A-----ATAAAG--A--AAAAT-TGA---GAGTGCGAT------------------CCGCCCCGTTCTGTTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................A-TTGGTGTTTGTCCGAGCTTGAA-........................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................TGGTGTTTGTCCGAGCTTGAA-........................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................TGGTGTTTGTCCGAGCTTGAA-A-----ATA...............................................................2511.0010000000100
........................................................TGTG------AA---AAGTGTACA-----TCGAGTA....................................................................................................................................................................................................................................................................2211.0010000100000
.........................................................................................................................................................................................................................................ATC-----TATTT---TGCAGTA-TTGGT..........................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................TGTTTGTCCGAGCTTGAA-A-----ATAAAG--A--.......................................................2611.0010100000000
...............................................................................................................................................................................................................................................................A-TTGGTGTTTGTCCGAGCTTGAA-A-----ATAA..............................................................2811.0010000001000
..............................................................................................................................................................................................................................................................................................ATAAAG--A--AAAAT-TGA---GAGTGC.....................................2111.0010000100000
..................................................................................................................................................................................................................................................................TGGTGTTTGTCCGAGCTTGAA-A-----AT................................................................2411.0010000010000
.........................................................................................................................................................................................ATCTAATT-CCTGGCTTC---TCT--------------------GCGT.......................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................GTGTTTGTCCGAGCTTGAA-C-----..................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................AAAG--A--AAAAT-TGA---GAGTGCGAT------------------CCGCCC..........2811.0010100000000
..................................................................................................................................................................................................................................................ATTT---TGCAGTA-TTGGTGTTT......................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................GAT------------------CCGCCCCGTTCTGTT.1811.0010100000000
...............................................................................................................................................................................................................................................................................................................TGA---GAGTGCGAT------------------CCGCCCCGTTC.....2311.0010010000000
.................................................................................................................................................................................................................................................TATTT---TGCAGTA-TTGGTGTTTGTCCG.................................................................................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................AGTGCGAT------------------CCGCCCCGTTCTG...2111.0010100000000
.........................................................................................................................................................................................................................................................................................................AAAAT-TGA---GAGTGCGAT------------------CCGCCCCG........2511.0010000001000
...................................................ATTGATGTG------AA---AAGTGTAC.................................................................................................................................................................................................................................................................................1911.0010000001000
.........................................................GTG------AA---AAGTGTACA-----TCGAGTAGA..................................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................TGTACA-----TCGAGTAGAAATTTCTGGATT......................................................................................................................................................................................................................................................2711.0010100000000
...............................................................................................................................................................................................................................................................A-TTGGTGTTTGTCCGAGCTTGA..........................................................................2211.0010000100000
...............................................................................................................................................................................................................................................................................................TAAAG--A--AAAAT-TGA---GAGTGC.....................................2011.0010010000000
droPer2
CGCTAGAAAGTTCGATTCACGAGCG----------AAAACCA-AATCCATAATTGATGTG------AA---AAGTGTACA-----TCGAGTAGAAATTTCTGGATTTA-TTTGTCAA-CGAAAT-GTTGAAACTGA------AACGAAACTTTCGTGT-----------------TGTATATTTTATCTAATT-CCTGGCTTC---TCT--------------------GCGTATC-----TATTT---TGCAGTA-TTGGTGTTTGTCCGAGCTTGAA-A-----ATAAAG--A--AAAAT-TGA---GAGTGCGAT------------------CCGCCCCGTTCTGTTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................GTTTGTCCGAGCTTGAA-A-----..................................................................1814.004400000
.......................................................................................................................................................................................................................................................................................................................GTGCGAT------------------CCGCCCCGTTCTGTT.2212.002200000
..............................................................................................................................................................................................................................................................................................ATAAAG--A--AAAAT-TGA---GAGTGC.....................................2111.001010000
........................................................................................................................................................................................................................................................................................A-----ATAAAG--A--AAAAT-TGA---GAGTGCGAT------------------CC..............2711.001100000
........................................................................................................................................................................................................................................................................................A-----ATAAAG--A--AAAAT-TGA---GAGT.......................................2011.001100000
.................................................................................................................................................................................................................................................................TTGGTGTTTGTCCGAGCTTGAA-A-----..................................................................2311.001000001
.........................................................................................GTAGAAATTTCTGGATTT.....................................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................................................................GTTTGTCCGAGCTTGAA-A-----AT................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................ATAAAG--A--AAAAT-TGA---GAGTG......................................2011.001001000
...............................................................................................................................................................................................TT-CCTGGCTTC---TCT--------------------GCGTATC-----T..............................................................................................................2211.001100000
...........................................................................................................................................................................................................................................................................................................AAT-TGA---GAGTGCGAT------------------CCGCCCC.........2211.001001000
.............................................................................................................................................................................................AATT-CCTGGCTTC---TCT--------------------GCGTATC-----G..............................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................AT-TGA---GAGTGCGAT------------------CCGCCCCGTTCTGTT.2911.001100000
........................................................................................................................................................................................................................................................................................A-----ATAAAG--A--AAAAT-TGA---GAGG.......................................2020.501100000
droVir3
AG--------------------------------------CA-AATCCATAATTAATGGAAA---AAA---ATGCCTAAA-----TCAAA--GGAAATTCTGGAATCA-TATGTCAATTGAAAT-A--------------AAATTGACGCGTGTGTGCGTGTTTG-----TTTGGTG-ATG-TTGAACTAATT-TTC---------------------------------------TGTTTTCTTT---TACAGTT----------------GCTGAAA-G-----AAA-AG--A-ATAA------------AACAAA----------------AGCCGCCCCA--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................ATTGAAAT-A--------------AAATTGACGCGTGTGT....................................................................................................................................................................................................2512.002000000000200000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CTGAAA-G-----AAA-AG--A-ATAA------------AACAAA----------------AGCC..............2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................A--------------AAATTGACGCGTGTGTGCG.................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................CAAA--GGAAATTCTGGAATCA-TATGT..............................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................A-ATAA------------AACAAA----------------AGCCGCCCC.........2011.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................CGTGTGTGCGTGTTTG-----TTTGGTG-A.............................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................T----------------GCTGAAA-G-----AAA-AG--A-ATAA------------AA......................................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
C-------------------AGCCC----------AAAGGCA-AATTCATAATTGATG-GAATAT--------GCACAAA-----TCTAA---ATAATTTTGGACTCT-TCTGTCAATTAT---------------TATAAAATTGACGACTGTGTTTCTATATA-----TACATTGAAAA------------------TATT--------TGAGCTAA-----TATTA-------TTTTCTCTCT---TACAGTT----------------GCTGAGA-A-TAAAACAGAG--A--A---------------ACAGTCGC--------CCTA-TTA--ATAT---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CA-----------------CAGCCC----------ACCAACA-AATCCATAATTA---TCAATGTGAA---AA---TGCCCCAAATCGAA--GGCTACTCTCAAATCA-AATACCATTTGAAAT-A--------AA------T--------TTCATGCCTCTGTG-----TTGTGTGTGTATCTC----AATT-GCTGACTTT--------AATACTAA-----TTTTA-----CATATTTTATCT---TACAGTT----------------GCTGAAA-A-----ACAGAA--AAGCAA---------AATAGCCA-CAC--------AGAGAAGCCG-CCC---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................TTGAAAT-A--------AA------T--------TTCATGCCTC...............................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 07:42 PM