dsi_28546

GTCTATCAAGCGAATTGGTCCCCAAAGATATTAGCATTCCAAGATGGGAGGTACGTTGGCTCGAAGAACGGATACAGTTATCACCTGGTGCAAAGTATTCAAGCAGTCTTGCTTGGCCTAAAGTTTAAAAAGTGGTTTTGAACATGGTTTTGAGGCGCTCAAAATTCTCCTGCAAAGGAGATAGCTTTCAAAAATGGTTAAAGTGTTTTAAAATCTGGATTTGTTAGTCAAATTGAGTTTTACTTTTGTC ************************************************...((((.........))))((...(((((((.(((..((((......(((((((....)))))))......((((((((.....))))))))..(((((((((...)))))))))....)))).))).))))))).))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.....................................................................................................................................................................................................................TCTGGATTTGTTAGTCAAA..................	19	0	1	2.00	2	2	0	0	0
.............................ATTAGCATTCCAAGATGGGA.........................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0
...............................................................................................................................................ATGGTTTTGAGGCGCTCAA........................................................................................	19	0	1	1.00	1	0	1	0	0
..........................................................................................................................................TGAACATGGTTTTGAGGCGCT...........................................................................................	21	0	1	1.00	1	0	0	1	0
...........................................................................................................................................................CGCTCACAATTCTCCT...............................................................................	16	1	3	0.33	1	0	0	0	1
..............................................................................................................................AAACAGTTGTTTTGATCATGG.......................................................................................................	21	3	5	0.20	1	0	0	1	0
...........................................................................................................................................................CGCTCACAATTCTCCTA..............................................................................	17	2	12	0.17	2	0	0	0	2
...............................................................................................................................................................................................AAATTGTTAAAGTGTT...........................................	16	1	20	0.05	1	0	0	0	1

CAGATAGTTCGCTTAACCAGGGGTTTCTATAATCGTAAGGTTCTACCCTCCATGCAACCGAGCTTCTTGCCTATGTCAATAGTGGACCACGTTTCATAAGTTCGTCAGAACGAACCGGATTTCAAATTTTTCACCAAAACTTGTACCAAAACTCCGCGAGTTTTAAGAGGACGTTTCCTCTATCGAAAGTTTTTACCAATTTCACAAAATTTTAGACCTAAACAATCAGTTTAACTCAAAATGAAAACAG ************************************************...((((.........))))((...(((((((.(((..((((......(((((((....)))))))......((((((((.....))))))))..(((((((((...)))))))))....)))).))).))))))).))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
.AGAGAGTTCGCTTAAC.........................................................................................................................................................................................................................................	16	1	1	1.00	1	1	0	0	0	0
.............................................................................................................................ATTTTTCATCAAAACTTTTAC........................................................................................................	21	2	2	0.50	1	0	1	0	0	0
...................GGGGTTTGAATAAACGTAAGGT.................................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0
...............................ATCAGAAGGTTCTACCATC........................................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	1	0
...........................................................................................................................................................GCGAGTTTTAAGGGG................................................................................	15	1	11	0.09	1	0	0	0	1	0
...............................................................................................................................TTGTCAACAAAACTAGTACC.......................................................................................................	20	3	12	0.08	1	0	0	0	0	1
.........................................................................................................................................................CCGCGAGTGTTAAGGGG................................................................................	17	2	12	0.08	1	0	0	0	1	0
..........................................................................................GTTTCTTATGTCCGTCAGA.............................................................................................................................................	19	3	18	0.06	1	0	0	0	0	1
..........................................................................................................................................................CGCGAGTGTTAAGGGGA...............................................................................	17	2	18	0.06	1	0	0	0	1	0
...........................................................................................................GAAGGAACCGGATTT................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:19796632-19796881 -	dsi_28546	GTC---TATCAAGCGAATTGGTCCCC-AAAGATATTAGCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---CGGATAC-AGTTATC------------A--CCTGGTGCAAAGTATT-----------------------CAAGCAG---T--CTTGCTTGG-CCTAAAGTTTAAAAA---G-TGG--------------TTTTGA------------------------------A---------------------------------------------------------CATGGTTTTGA-GGCGCTCAA-AATTCTCCTGCAAAGG--AGAT----------AGCTTTCAAA----------------------AATGGTTAAAGTG-TTTTAAAATCTGGATTTGTTAGTCAAATTGAGTTTTACTTTTGTC-------------
droSec2	scaffold_11:117272-117525 -		GTC---TATCAAGCGAATTGGTCCCC-AAAAATATTAGCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---CGGATAC-AGTTATC------------A--CCTGGTGCACAGTATT-----------------------CAAGCCG---T--CTTGCTTGG-CCTAAAGTTGAAAAAAAAGTTGG--------------TTTTGA------------------------------A---------------------------------------------------------CATGGTTTAAA-GGCGCTCAA-AATTCTCCTGCAAAGG--AGAT----------AGCTTTTAAA----------------------AATGGTTAAAGTG-TTTTAAAATCTGGATTTGTTAGTCAAATTGAGTTTTACTTTTGTC-------------
dm3	chr3L:20212998-20213247 -		GTC---TATCAAGTGAATTTGTCCCCGAAAAATATTAGCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---CGGATAC-AGTTATC------------T---CAGGTGCACAGTATT-----------------------CAAGACG---T--CTTGCTTCG-ACTAAATTTTGAAAA---G-TGG--------------TTTCAA------------------------------A---------------------------------------------------------CATGGTTTTAA-GGCCCTG-A-AATTCTCCTGCAAAGG--AGAT----------GACTTTCAAA----------------------AATGGCTAAAATGACTTTCAAATTTCGATTTGTTACTCAAATTGAGTTTTTCTTTCGTC-------------
droEre2	scaffold_4784:19937120-19937329 -		AT-------CAAGCGGATTGGTCCCC-A-AAAAATTACCA-TAC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---AGGATAC-ACTTATC------------T---CT---------------------------------------GCCG---T--CTTGCTTCA-GCTAAAATTGAAAAA---G-TGG--------------CTTCGA------------------------------AAATGGGTG-----------------------------AACTTTGTATACTAGTAGATGCACGTTAGCATGCTAGCCCA-GATTCTCCTGTAAAGGTTCGAT----------AAGTTTCAGA----------------------AATAGCT--------------------------------------------------TC-------------
droYak3	3L:20359375-20359623 +		AT-------CAAGCGAATTGGTCCCC-AAAAAAATTACCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGCA------GAA---CGGATAC-ACTTATC------------T---CTGGTGAAC------------------------------------------------------TTGTATTTAAAAA---G-TGG--------------TTTTTAAGGAGTGGAAACAGATTTGAATCCCGCTGAATATGAGTG-----------------------------ATATTTGTAT------AGATACACGTTAGCATGTTACCCTA-CATTCTCCTGTAGAGGTTTAAGTAATTT-------------A----------------------AACAG------------------------CTATTATTCAAATCGAGTTTTCCCTTTTTC-------------
droEug1	scf7180000409711:5742328-5742444 +		GC-------CAAGCGAATAAGTCCAA-AAATATATTAACA-TTC----CAAGATGGGAGGTACGTTATC-------CCTAG------AAA---CGGATAA-A----TCAT---TGGTGTTT---TTGGTGAAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGAAAACTTTCTTGTTT-------------
droBia1	scf7180000302193:2991932-2992118 -		GC-------CAAGCGAATTAGTCCAA-G-TTATATTACCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCACG------GAG---TGGATAC-C----TC----TCAGTGTTT---TTGGTGTAGAATTTA-----------------------AAAGCAG---T--TTTGTTG---------------------------------------------------------------------------------------------TCACTTTAAATTCTTTGTGCAGTCTTTTTAT------CAC-----------A-AACTGTG-A-CA--------------------------------------------------------------------------------------------------------TTTTCTGTAAATCCATTGAATTGCTATAGT
droTak1	scf7180000415868:172907-173014 -		GTC---TACCAAGCGAATTAGTCCAG-A-ATATATTACCA-TAC----CAAAATGGGAGGTACGTTGTC-------TCTAA------AAG---CGGATAT-T----TCACTCTGAGTGTTT---TCGGTGCAAACAATT-----------------------CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491193:4534369-4534441 -		GTC---TAACGAGCGAATTAGTCCCC-A-ATAAATTACCA-TTC----CAAAATGGGAGGTACGTTGTC-------TCCAA------GGA---CGGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000765903:878-952 -		GTC---CAACGAGCGAATTAGTGCCC-A-ATAAATTACCA-TTT----CAAGATGGGAGGTACGTTGGC-------TCTAA------GGA---CGTATAC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454113:2092113-2092386 +		AC-------CAAGCGAATTATTCTAT-A---ATATTACCA-ATC----CAAAATGGGAGGTACGTTGGA-------CCTAA------AAAAAATGGAGTT-----TA------CTGTGATT---TTGGTGAAGAATTT------------------------CATAACATAGTCCTTTGCTTCGAAATTGAATTAAAAAA---A-AAAACTGAAACAACAAGTTTCAA-GAAA-----AAA------GGTCAAGTTGAATAAGTGAA-----------------------------AACTTTGTTT------TAAAAATTTTTATAATATGAGCTTA-ATTTA------AAAAATTTTATAAAGTAAAAAT-----------------------------------G------------------------CTGTTTTTG-AATGAAGTTTTTA--TTGTA-------------
droKik1	scf7180000302441:2952126-2952402 -		C-----TGCCAAGCGAATTAGTCACT-A----TAAAACCAGGCC----CAAGATGAGAGGTATGTAGGTGCAGGCCTCGGCCTCCGAAGA---TGGATCT-A----TA------------A--CGCAGAGAAAGTTACCAGAAAGGTTTTACGAAGGCTTTTCA--AAG---T--CTTTTTAGC-AACAAA-------------------------------TTACTA------------------------------A--------TATTGTTTTCACT--------------------------------------------TGG-GGCTTAG-TAAAT--TCAGCCAAAGT--AAAT----------AACCTTTAGGGAGGTCAGAAATATGATTAATGAATAGTTAA-ACG-CTTTAAAGTCTATA---------AAATATGTATTCTAAATCCAAT-------------
droAna3	scaffold_13337:6336370-6336417 -		GCG---AA-TAAGTGATT------------TATCTTACCA-AAC----CGCGATGGGAGGTAGGTTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396709:78070-78262 -		GCG---AA-TAAGTG------------------ATTACCG-AAC----CGCGATGGGAGGTAGGTTGAC-------CTCAT------CAT---TGGAATTCAGTTTTA------------AATCCTTTTTCAAAATAT----------------------------ATG---T--TTTTTTTGG-CACAAAACGAAGTTA---T-TTC--------------TTCTAT------------------------------A---------------------------------------------------------CATTCTTCAAATGGCGTCCAA-AAATATTTAAAAAAAA--GGAG----------TGCTTT-----------------------------------------------------------CAGTGAATTTTAATTTAAA--TTGTA-------------
dp5	XR_group6:2076387-2076453 -		ATCGAATACCGAGTGAATCTGTCGTA-ATTAAC--T-CCAAGTCCGATCCAAATGGGAGGTAGG---GC-------TCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_9:369610-369676 -		ATCGAATACCGAGTGAATCTGTCGTA-ATTAAC--T-CCAAGTCCGATCCAAATGGGAGGTAGG---GC-------TCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTC---TATCAAGCGAATTGGTCCCC-AAAGATATTAGCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---CGGATAC-AGTTATC------------A--CCTGGTGCAAAGTATT-----------------------CAAGCAG---T--CTTGCTTGG-CCTAAAGTTTAAAAA---G-TGG--------------TTTTGA------------------------------A---------------------------------------------------------CATGGTTTTGA-GGCGCTCAA-AATTCTCCTGCAAAGG--AGAT----------AGCTTTCAAA----------------------AATGGTTAAAGTG-TTTTAAAATCTGGATTTGTTAGTCAAATTGAGTTTTACTTTTGTC-------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGATTTGTTAGTCAAA...............................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATTAGCA-TTC----CAAGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATGGTTTTGA-GGCGCTCAA-........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................TGA------------------------------A---------------------------------------------------------CATGGTTTTGA-GGCGCT............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

GTC---TATCAAGCGAATTGGTCCCC-AAAAATATTAGCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---CGGATAC-AGTTATC------------A--CCTGGTGCACAGTATT-----------------------CAAGCCG---T--CTTGCTTGG-CCTAAAGTTGAAAAAAAAGTTGG--------------TTTTGA------------------------------A---------------------------------------------------------CATGGTTTAAA-GGCGCTCAA-AATTCTCCTGCAAAGG--AGAT----------AGCTTTTAAA----------------------AATGGTTAAAGTG-TTTTAAAATCTGGATTTGTTAGTCAAATTGAGTTTTACTTTTGTC-------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................ATTAGCA-TTC----CAAGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	4	0
............................AAAATATTAGCA-TTC----CAAGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
..................................TTAGCA-TTC----CAAGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............................AAATATTAGCA-TTC----CAAGATGGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
................ATTGGTCCCC-AAAAATATTAGCA-T................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..C---TATCAAGCGAATTGGTCCCC-AAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................A----------------------AATGGTTAAAGTG-TTTTAA....................................................	20	1	1.00	1	0	0	1	0
.................................ATTAGCA-TTC----CAAGATGGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............AATTGGTCCCC-AAAAATATTAGCA-TTC----..........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0

dm3

GTC---TATCAAGTGAATTTGTCCCCGAAAAATATTAGCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---CGGATAC-AGTTATC------------T---CAGGTGCACAGTATT-----------------------CAAGACG---T--CTTGCTTCG-ACTAAATTTTGAAAA---G-TGG--------------TTTCAA------------------------------A---------------------------------------------------------CATGGTTTTAA-GGCCCTG-A-AATTCTCCTGCAAAGG--AGAT----------GACTTTCAAA----------------------AATGGCTAAAATGACTTTCAAATTTCGATTTGTTACTCAAATTGAGTTTTTCTTTCGTC-------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................GATGGGAGGTACGTTGGC-------TCGAA------GA.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........AGTGAATTTGTCCCCGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTC---TATCAAGTGAATTTGTCCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................T--CTTGCTTCG-ACTAAATTTTGAAAA---G-T............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AGCA-TTC----CAAGATGGGAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGTCCCCGAAAAATATTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTACTCAAATTG............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGAAAA---G-TGG--------------TTTCAA------------------------------A---------------------------------------------------------CATGGTT.......................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GCACAGTATT-----------------------CAAGACG---T--...........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATTAGCA-TTC----CAAGATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TC---TATCAAGTGAATTTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AT-------CAAGCGGATTGGTCCCC-A-AAAAATTACCA-TAC----CAAGATGGGAGGTACGTTGGC-------TCGAA------GAA---AGGATAC-ACTTATC------------T---CT---------------------------------------GCCG---T--CTTGCTTCA-GCTAAAATTGAAAAA---G-TGG--------------CTTCGA------------------------------AAATGGGTG-----------------------------AACTTTGTATACTAGTAGATGCACGTTAGCATGCTAGCCCA-GATTCTCCTGTAAAGGTTCGAT----------AAGTTTCAGA----------------------AATAGCT--------------------------------------------------TC-------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................CC-A-AAAAATTACCA-TAC----CAAGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..............GGATTGGTCCCC-A-AAAAATTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
................................AATTACCA-TAC----CAAGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GTAGATGCACGTTAGCATGCTAGCCC..........................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0

droYak3

AT-------CAAGCGAATTGGTCCCC-AAAAAAATTACCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCGCA------GAA---CGGATAC-ACTTATC------------T---CTGGTGAAC------------------------------------------------------TTGTATTTAAAAA---G-TGG--------------TTTTTAAGGAGTGGAAACAGATTTGAATCCCGCTGAATATGAGTG-----------------------------ATATTTGTAT------AGATACACGTTAGCATGTTACCCTA-CATTCTCCTGTAGAGGTTTAAGTAATTT-------------A----------------------AACAG------------------------CTATTATTCAAATCGAGTTTTCCCTTTTTC-------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................AAGATGGGAGGTACGTTGGC-------..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TGAATCCCGCTGAATATGAGT................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................AAAAATTACCA-TTC----CAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................ATTACCA-TTC----CAAGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................TACCA-TTC----CAAGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................ATTACCA-TTC----CAAGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............AATTGGTCCCC-AAAAAAATTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................TTACCA-TTC----CAAGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

GC-------CAAGCGAATAAGTCCAA-AAATATATTAACA-TTC----CAAGATGGGAGGTACGTTATC-------CCTAG------AAA---CGGATAA-A----TCAT---TGGTGTTT---TTGGTGAAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGAAAACTTTCTTGTTT-------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GC-------CAAGCGAATTAGTCCAA-G-TTATATTACCA-TTC----CAAGATGGGAGGTACGTTGGC-------TCACG------GAG---TGGATAC-C----TC----TCAGTGTTT---TTGGTGTAGAATTTA-----------------------AAAGCAG---T--TTTGTTG---------------------------------------------------------------------------------------------TCACTTTAAATTCTTTGTGCAGTCTTTTTAT------CAC-----------A-AACTGTG-A-CA--------------------------------------------------------------------------------------------------------TTTTCTGTAAATCCATTGAATTGCTATAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTC---TACCAAGCGAATTAGTCCAG-A-ATATATTACCA-TAC----CAAAATGGGAGGTACGTTGTC-------TCTAA------AAG---CGGATAT-T----TCACTCTGAGTGTTT---TCGGTGCAAACAATT-----------------------CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTC---TAACGAGCGAATTAGTCCCC-A-ATAAATTACCA-TTC----CAAAATGGGAGGTACGTTGTC-------TCCAA------GGA---CGGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTC---CAACGAGCGAATTAGTGCCC-A-ATAAATTACCA-TTT----CAAGATGGGAGGTACGTTGGC-------TCTAA------GGA---CGTATAC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AC-------CAAGCGAATTATTCTAT-A---ATATTACCA-ATC----CAAAATGGGAGGTACGTTGGA-------CCTAA------AAAAAATGGAGTT-----TA------CTGTGATT---TTGGTGAAGAATTT------------------------CATAACATAGTCCTTTGCTTCGAAATTGAATTAAAAAA---A-AAAACTGAAACAACAAGTTTCAA-GAAA-----AAA------GGTCAAGTTGAATAAGTGAA-----------------------------AACTTTGTTT------TAAAAATTTTTATAATATGAGCTTA-ATTTA------AAAAATTTTATAAAGTAAAAAT-----------------------------------G------------------------CTGTTTTTG-AATGAAGTTTTTA--TTGTA-------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C-----TGCCAAGCGAATTAGTCACT-A----TAAAACCAGGCC----CAAGATGAGAGGTATGTAGGTGCAGGCCTCGGCCTCCGAAGA---TGGATCT-A----TA------------A--CGCAGAGAAAGTTACCAGAAAGGTTTTACGAAGGCTTTTCA--AAG---T--CTTTTTAGC-AACAAA-------------------------------TTACTA------------------------------A--------TATTGTTTTCACT--------------------------------------------TGG-GGCTTAG-TAAAT--TCAGCCAAAGT--AAAT----------AACCTTTAGGGAGGTCAGAAATATGATTAATGAATAGTTAA-ACG-CTTTAAAGTCTATA---------AAATATGTATTCTAAATCCAAT-------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCG---AA-TAAGTGATT------------TATCTTACCA-AAC----CGCGATGGGAGGTAGGTTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................CTTACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	5	0	0	0	0
..............GATT------------TATCTTACCA-AAC----CGCGATGGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	3	0	0	0	0
...............................ATCTTACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0
..................................TTACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
..........AAGTGATT------------TATCTTACCA-AAC----CGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
...................................TACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
..........AAGTGATT------------TATCTTACCA-AAC----..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................................CTTACCA-AAC----CGCGATGGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..............................TATCTTACCA-AAC----CGCGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..........AAGTGATT------------TATCTTACCA-AAC----C.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................TT------------TATCTTACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......AA-TAAGTGATT------------TATCTTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............GATT------------TATCTTACCA-AAC----CGCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............GATT------------TATCTTACCA-AAC----CGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................................CCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................TTACCA-AAC----CGCGATGGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...............................ATCTTACCA-AAC----CGCGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................CA-AAC----CGCGATGGGAGGTAGGTTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	26	1	1.00	1	0	1	0	0	0	0
..............GATT------------TATCTTACCA-AAC----CGCGATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..............................TATCTTACCA-AAC----CGCGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................ACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............GATT------------TATCTTACCA-AAC----CGCGATGGGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.........................................AAC----CGCGATGGGAGGTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................T------------TATCTTACCA-AAC----CGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................AAC----CGCGATGGGAGGTAGGTTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	24	1	1.00	1	0	1	0	0	0	0
............GTGATT------------TATCTTACCA-AAC----CGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

GCG---AA-TAAGTG------------------ATTACCG-AAC----CGCGATGGGAGGTAGGTTGAC-------CTCAT------CAT---TGGAATTCAGTTTTA------------AATCCTTTTTCAAAATAT----------------------------ATG---T--TTTTTTTGG-CACAAAACGAAGTTA---T-TTC--------------TTCTAT------------------------------A---------------------------------------------------------CATTCTTCAAATGGCGTCCAA-AAATATTTAAAAAAAA--GGAG----------TGCTTT-----------------------------------------------------------CAGTGAATTTTAATTTAAA--TTGTA-------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATCGAATACCGAGTGAATCTGTCGTA-ATTAAC--T-CCAAGTCCGATCCAAATGGGAGGTAGG---GC-------TCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............AATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	3	0	0	0	0	0	0	2
.....ATACCGAGTGAATCTGTCGTA-ATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	3	0	1	0	0	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	3
............GTGAATCTGTCGTA-ATTAAC--T-CCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	3
............GTGAATCTGTCGTA-ATTAAC--T-CCAAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	1	0	0	0	0	0	0	2
............GTGAATCTGTCGTA-ATTAAC--T-CCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	3
............GTGAATCTGTCGTA-ATTAAC--T-CCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.....................................CCAAGTCCGATCCAAATGGGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	2	0	0	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	1
................ATCTGTCGTA-ATTAAC--T-CCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.....ATACCGAGTGAATCTGTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..............................AAC--T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	1	0	0	0	0	0
...............................AC--T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	0	0	0	0	1
.....ATACCGAGTGAATCTGTCGTA-ATTAAC--T-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	0	0	0	0	0	0	1
.....ATACCGAGTGAATCTGTCGTA-AT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............GTGAATCTGTCGTA-ATTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............GAATCTGTCGTA-ATTAAC--T-CCAAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................ATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................CGTA-ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................ATCCAAATGGGAGGTAGG---GC-------T.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................CGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................A-ATTAAC--T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................TCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........GAGTGAATCTGTCGTA-AT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........AGTGAATCTGTCGTA-ATTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............AATCTGTCGTA-ATTAAC--T-CCAAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................CAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

ATCGAATACCGAGTGAATCTGTCGTA-ATTAAC--T-CCAAGTCCGATCCAAATGGGAGGTAGG---GC-------TCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............GTGAATCTGTCGTA-ATTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	22.00	22	21	0	1	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	14.00	14	14	0	0	0	0	0
...............AATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	11.00	11	11	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	11.00	11	11	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	10	0	0	0	0	0
................ATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	10	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	9.00	9	9	0	0	0	0	0
...........AGTGAATCTGTCGTA-ATTAAC--T-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	8	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	7	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	5	0	0	0	0	0
..................CTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	4	0	0	0	0	0
..................CTGTCGTA-ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
.......................GTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0	0
...............AATCTGTCGTA-ATTAAC--T-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.....ATACCGAGTGAATCTGTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	2	0	1	0	0	0
ATCGAATACCGAGTGAATCTGTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
................ATCTGTCGTA-ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	3.00	3	3	0	0	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CCAAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
................................C--T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0
.................TCTGTCGTA-ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
...............................AC--T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0
..........GAGTGAATCTGTCGTA-ATTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
ATCGAATACCGAGTGAATCTGTCGTA-ATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
...............AATCTGTCGTA-ATTAAC--T-CCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
................ATCTGTCGTA-ATTAAC--T-CCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....................................CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0
..........GAGTGAATCTGTCGTA-ATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	1	0	0	0
...........AGTGAATCTGTCGTA-ATTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..CGAATACCGAGTGAATCTGTCGTA-AT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
..CGAATACCGAGTGAATCTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..CGAATACCGAGTGAATCTGTCGTA-ATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................CTGTCGTA-ATTAAC--T-CCAAGTCCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........GAGTGAATCTGTCGTA-AT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................ATCTGTCGTA-ATTAAC--T-CCAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
...................TGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
..............................AAC--T-CCAAGTCCGATCCAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........AGTGAATCTGTCGTA-ATTAAC--C-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....ATACCGAGTGAATCTGTCGTA-AT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................TAAC--T-CCAAGTCCGATCCAAATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAAGTCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......................GTA-ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................GTCCGATCCAAATGGGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............GAATCTGTCGTA-ATTAAC--T-CCAAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........GAGTGAATCTGTCGTA-ATTAAC--T-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............AATCTGTCGTA-ATTAAC--T-CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................TCTGTCGTA-ATTAAC--T-CCAAGTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................GTCCGATCCAAATGGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................CTGTCGTA-ATTAAC--T-CCAAGTCCGATCC........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............AATCTGTCGTA-ATTAAC--T-CCAAGTCCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
....................GTCGTA-ATTAAC--T-CCAAGTCCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....ATACCGAGTGAATCTGTCGTA-ATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
............GTGAATCTGTCGTA-ATTAAC--T-CCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....ATACCGAGTGAATCTGTCGTA-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.......................GTA-ATTAAC--T-CCAAGTCCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....ATACCGAGTGAATCTGTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................ATCTGTCGTA-ATTAAC--T-CCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................GTCGTA-ATTAAC--T-CCAAGTCCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

dsi_28546

3l:19796682-19796831 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.2	-33.1	-33.0