ID:

dsi_28521

 Coordinate:

3l:7326151-7326209 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCATAAAACCCTCGTCGCCCATCATCCAGGTGATCTCCTTCGTAATTCAGGTGAGTAGTGATCGGATGCTTCGAATTCAGTCGCTAAAAACCATTTTAGTATGTTTTAGTCATATGCATTAAGGTATTCCTCATTATCCTGCTAAGGAGCAAGACCCAA
**************************************************((...(((((((.((((.......)))).)))))))...))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M025
embryo
..............................................TCAGGTGAGTAGTGATCGGTTTT.......................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0
........................................CCTAATTCAGGTATGTAGTGA.................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0
........................TCCAGGTGATCTCCTTCGTA................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................TCCTAATTCAGGGGGGTAGTGA.................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................TAGTGATAGGATGCT......................................................................................... 15 1 2 0.50 1 0 0 0 0 1 0 0 0
......................................................GTAGAGATCGGATGC.......................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0 0 0
...............................GATCTCCTCCGTACTTGAGG............................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 1 0 0
......................................................................TCGAATTCTGTCGCT.......................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0
....................................................GACTAGTGATCGGGTG........................................................................................... 16 2 17 0.06 1 0 0 0 0 1 0 0 0
CCATGCAATCCTCGTCGCC............................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..........................................TAATTCAGGGATGTAGTGA.................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGTATTTTGGGAGCAGCGGGTAGTAGGTCCACTAGAGGAAGCATTAAGTCCACTCATCACTAGCCTACGAAGCTTAAGTCAGCGATTTTTGGTAAAATCATACAAAATCAGTATACGTAATTCCATAAGGAGTAATAGGACGATTCCTCGTTCTGGGTT
**************************************************((...(((((((.((((.......)))).)))))))...))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
.....................................................................AAGCTTTAGTCAGCGA.......................................................................... 16 1 2 4.00 8 8 0 0 0 0
......................................................................AGCTTTAGTCAGCGA.......................................................................... 15 1 12 2.33 28 27 0 0 0 1
.....................................................................AAGCTTTAGTCAGCG........................................................................... 15 1 9 1.11 10 10 0 0 0 0
..TTTTTTGGGAGCAGCGGGTA......................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
.....TTTGGGAGCAGCGGGTAGTAG..................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.....................................................................AAGCTTAAGTCAGCGA.......................................................................... 16 0 1 1.00 1 1 0 0 0 0
....................................................................CAAGCTTTAGTCAGCGA.......................................................................... 17 2 11 0.91 10 10 0 0 0 0
.....................................................................AAGCTTTAGTCAGCGATATTG..................................................................... 21 3 2 0.50 1 1 0 0 0 0
.....................................................................AAGCTTTAGTCAGCGATAT....................................................................... 19 2 3 0.33 1 1 0 0 0 0
...........AGCAGCGGATAGTAG..................................................................................................................................... 15 1 11 0.27 3 2 0 1 0 0
......................................................................AGCTTAAGTCAGCGAG......................................................................... 16 1 6 0.17 1 1 0 0 0 0
...........................................................CTAGCCTACGCGGCTTA................................................................................... 17 2 6 0.17 1 0 0 1 0 0
......................................................................AGCTTTAGTCAGCGATATG...................................................................... 19 3 16 0.13 2 2 0 0 0 0
...ATGTTGGGAGCCGCGG............................................................................................................................................ 16 2 17 0.12 2 0 0 2 0 0
...................................................................GCAAGCTTAAGTCAGCG........................................................................... 17 2 9 0.11 1 1 0 0 0 0
............................................................................................TCAAATCTTACAAAATCAGC............................................... 20 3 10 0.10 1 0 0 0 1 0
...........................................................................................................................................ACGATTCATCGATGTGGGT. 19 3 13 0.08 1 0 0 1 0 0

Generated: 04/24/2015 at 05:35 AM