ID:

dsi_28519

 Coordinate:

x:426051-426200 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.7 -5.4 -5.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCGGAGTCATCTGTTCCATTGCGCACAAAACAAAACAAGAAGAATTCATGTAAATGAATATTAATAGCCCGTCATCAAGGGGAGGTCATTGGCTATTTCTTTCGCTCGTCCGCTCCCTCAGTTTCGCCTATAACTGCACTTGCTCTGTCTGCGAAATAACGGGACTCAACAACAAATGGCATTTGCAGATGGCTGCCGCCGCATCGTCTAATTGGAATTTGTGCAAAGAAGAGGCGTAAAGAAAACAAA
***************************************************************************************************************************(((((..(((...((....))..)))..)))))......................************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
...........................................................................................................................................................AATAACGGGACTCAACAACAAAT........................................................................ 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................TAACGGGACTCAACAACAAATGGCATT.................................................................. 27 0 1 2.00 2 0 0 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................TTGTGCAAAGAAGAGGCGTAAAGAAA..... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................TTCGCCTATAACTGCACTTGCTCTGTC.................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................TGCGAAATAACGGGACTCAACAAC............................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................TCTGTCTGCGAAATAACGGGACTCAAC............................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CGCCGCATCGTCTAATTGGAATTTG............................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................ATCAAGGGGAGGTCATTGGCT........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................AATAGCCCGTCATCAAGGGGAGGTCATTGG............................................................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................CTGTCTGCGAAATAACGGGAC.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TAACGGGACTCAACAACAAATGGCGAA.................................................................. 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................ATAACTGCACTTGCTCTGTCTGCG................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................TAACGGGACTCAACAACAAATGGC..................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................AACAAGAAGAATTCATGTAAA................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................CATCAAGGGGAGGTCATTGGC............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GATTTTGTGCACAGAAGAGAC.............. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0
............................AAAAAAAACAAGAAGAGTTCA......................................................................................................................................................................................................... 21 2 4 0.50 2 0 0 0 0 0 0 0 2 0
.............................AACGACACAGGAAGAATTCA......................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................GAAGAAGCGTAAAGA....... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACGCCTCAGTAGACAAGGTAACGCGTGTTTTGTTTTGTTCTTCTTAAGTACATTTACTTATAATTATCGGGCAGTAGTTCCCCTCCAGTAACCGATAAAGAAAGCGAGCAGGCGAGGGAGTCAAAGCGGATATTGACGTGAACGAGACAGACGCTTTATTGCCCTGAGTTGTTGTTTACCGTAAACGTCTACCGACGGCGGCGTAGCAGATTAACCTTAAACACGTTTCTTCTCCGCATTTCTTTTGTTT
************************************************************************(((((..(((...((....))..)))..)))))......................*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
........GTAGACAAGGTAACGCGTGTTT............................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................GCAGGCGAGGGAGTCAAAGCG.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............AGGTAACGCGTGTTTTGTTTT...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................GAGACAGACGCTTTATTG......................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................GGGCAGTAGTTCCCCTCCAGT................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................AGACGCTTTATTGCCCTGAGTT................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................CGAGCAGGCGAGGGAGTCAAAGCG.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................CGATAAAGAAAGCGAGCAGGC......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
....ATCAGTAGACAAGGTAACGCGT................................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................TTGTTCTTCTTAAGTACATTT................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..............AAGGTAACGCGTGTTTTGTTT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................GTGAACAAGACAGAC.................................................................................................. 15 1 15 0.13 2 0 0 0 0 0 0 2
.....................................................................................................................................TGACGTGTTCGAGACAG.................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 1 0
.....................................................................................................AAGCGAGCAAGCGAGG..................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 1 0
....................................................................................................................GGAGTCAAAGCGCATAC..................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0
..................TAAAGCCTGTTTTGTGTTGTT................................................................................................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 1 0
.........TAGAATAGGTAACGCG................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0
....................................................................................CCAGCAACCGATGAAG...................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:426001-426250 - dsi_28519 TGCGGAGTCATCTGTTCCATTGCGCAC------------------------------------------A----A-AACAAAACAAGA------------------------AGA-ATTCATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCTC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------GAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAAACAAA
droSec2 scaffold_10:360268-360516 - TGCGGAGTCATCTGTTCCATTGCACAC------------------------------------------A----A-AACAAAACAAGA------------------------AGA--GACATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCTC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------GAAATAACGGGAGT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAAACAAA
dm3 chrX:513705-513953 - TGCGGAGTCATCTGTTCCATTGCGCAC------------------------------------------A----T-AACAAAACAAGA------------------------AGA--GACATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------GAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATT------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAAACAAA
droEre2 scaffold_4644:468140-468389 - TGTGGAGTCATGTGTTCCACTGCACAC------------------------------------------A----AAAACAAGACAAGA------------------------AAA--GCCATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------AAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------AGCGTTGAGAAAACAAA
droYak3 X:434620-434868 - TGTGGAGTCATGTGTTCCACTGCACAC------------------------------------------A----AAAACAAGTCAAGG------------------------AAA--GCCATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------AAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------AGCGTAAAGA-AACAAA
droEug1 scf7180000409277:906176-906432 - TGCAAAGGCAT----------------------------------------ATTTT---TAATTGTAGCA-------ACAAAACA-GAA---------------------GCAA-AA-----CTAAATGAATGTTAATTGCCCATC---------------------ATCAAG-TGGAGGTCATTGGCTAT--------------------------------------CTCTTTCC--TGCTTGCTCCACC------------------------------TCTT---CC------------------------------------------T--CC------------------AACTGCACTC----GC------------TGTGT-CTGC------AAAATAACGGGACTAAC------------------GGC---------AG----CCAG---TAAGAA------ACAACAACAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCGGCCGC------------------------TTCATCTAATTGGAATT--TGTGAAAA-----------------AAA-----TAGA-AG------------------------------AAA-T-----------ACAAA
droBia1 scf7180000301760:1578470-1578743 - TGCAAAGTCAT----------------------------------------ATTTT---TAATTGTAACGGA--------------------------------------GGCA-AA-----CTAAATGAATATTAATTGCCCACCA------------------------GG-CGGAGGTCATCGGCTATC---------------G-----------------GACCCTCTCTCGCCC--------CCC---------------------------------------TCC-------------G-------------------CGCGCCCC--GC------------------CACTGCACTC----GTTGTGTGTGTGTGTGTGT-CTGC------AGAATAACGGGACTAAC------------------GGC---------AG----CCA-ACT------------GCAGGAACAAC------------------------------------ACAAATG------GCATTTGCAGATGGCGGC---------------------------TTCGTCTAATTGGAATT--TGTGCAACAAGAACAC-AGGCAGAAACGGA-AACAGA-AG---------A--------------------AAC-T-----------AAAAC
droTak1 scf7180000415281:192808-193051 + TGCAAAGTCAT----------------------------------------ATTTT---TAATTGCGGCCGA--------------------------------------GAAA-AC-----CTAAATGAATATTAATTGCCCATCA------------------------AG-CGGAGGTCATTGGCTAT--------------------------------------CTCGCTCGCTCTACCCCTCCCCC------------------------------TCCTCCCTC-----------------------------------GGCCCCAT--CT------------------AACTGCACTC----G--------------CTGT-CTGC------GAAATAACGGGACTAAC------------------GGC---------GGA--G-CGC---AAA---------GCAACAACAACA-----------------------------------ACAAATGGCAAAGGCATTTGCAGATGGCGGCCGC------------------------CTCGTCTAATTGCAAC--------AAA--------------------------------------------------------------------------AACAACAAA
droEle1 scf7180000491023:811468-811714 - TGCAAAGTCAT----------------------------------------ATTGT---TAATTGTTGCAG-----AGGAAAACT-GAA---------------------G-AA-AA-----CTAAATGAATATTAATTGCCCAACG------------------------AG-TGGAGGTCACTATTTGTGGT-----------------------------------CTCGCTTG--------CTCCCCC------------------------------T-----TCTCCACGGCAGCGTGCCCC---ACT--CCTCTCC----------C--CT------------------AACTGCACTCTGC-GC------------TCTGT-CTGC------AAAATAACGGGACTAAT-------------------------------------------------------------------------------------------------------------------GCATTTGCAGATGGCGGCTG-------------------------ATTTTCTAATTGGAATT--TGTGCAACAA------------------AA--------------------------------------------AACATAGAGA-AACAAA
droRho1 scf7180000779514:306681-306928 - TGCAAAGTCAT----------------------------------------ATTGT---TAATTGTAACAG-----AGGAAAACA-GAA---------------------G-AA-TA-----CTAAATGAATATTAATTGCCCATCG------------------------AG-TGGAGGTCATTGATGGCGCT-----------------------------------CTCGCTCG--------CTCCCCT------------------------------CTTTTC----CACCGCATTGTGCCGC---ACT--CCTTCCT----------C--CT------------------AACTGCACTCCGT-GC------------TCTGT-CTGC------AAAATAACGGGACTAAT-------------------------------------------------------------------------------------------------------------------GCATTTGCAGATGGCGGCTGC-------------------------TTTTCTAATTGGAATT--TGTGCAACAA------------------AA--------------------------------------------AACATAGAGA-AACAAA
droFic1 scf7180000453927:1001232-1001537 - TGCAAAGTCGT----------------------------------------ATTTTTATTAATTGTAACAGA--A-----AAACA---------ACAAGAACA-----AAA-AGAAA-----CTAAATGAATATTAATTGCCCATCA------------------------AG-TGGAGGTCATTGGCGTT--------------------------------------CTCGCTCTCTC--------CCT-----------G--------CC---------T-----GCTTT--CGTATAGTGCCGC---TTGCCTCTCTCT----------T--CT------------------AACTGCACTC----G--------------CTGT-CTGC------AAAATAACGGGACTAAC------------------GGC---------AA---GCC-A---GAAGCAACACCGAAAACAACAACA-----------------------------------ACAATTG------GCATTTGCAGATGGCGGCTGC------------------------TTCGTCTAATTGGAATT--TGTACAAA-----------------AACAAAAACCGA-AG------------------------------AAAAATCATAGCGA-AACAAA
droKik1 scf7180000302469:1787483-1787752 + TGCA----CAT----------------------------------------TTTTT---TAATTGTGACAA-----------------------------------------AA-AA-----CTAAATGAATATTAATTGCCCATC------------------------CAG-GCGAGGTCATCT-CTCT------------TGTCT-----------------CT--GTCGC-------------------GCTCTCGCTGAAATGCACCGTTTTTT-CGCTTTTCGCC------------------------------------------T--AGGCTGCACCGACCTCTC--GCTCGCACTCTCTCGC--------AG--TGTGTGCTGC------GAAATAACGGGACCG---------------------------------------------------------------ACAAGA-----------------------------------ACAAATG------GCATTTGCAGATGGCGGCGGCCGTTC------------------GCTCGTCTAATTGGAATT--TGTGCAAA-----------------ACAAA-AACAGAAAG------------------------------AAG-T-----------GTTCA
droAna3 scaffold_12929:418956-419326 - GCCGGAGCAAA-------------------------------------CGCAGTTT---TAATTGTAGCGAAAAA----AAAAAAAAAA---------------------CAAA-AA-----CTAAATGAATATTAATTGCC----------------------------------GAGGTCATCAGCGGTGCTCCCCATTTTCCCCCCACCACCATCACCACCAA-----C-------------------CTCCTTTCTCTGCAAT------CTTTTT-CTCTCCTTGCTTTA--------TGC-GCGCTG--CTGCTCTCT----------TCTAA------------------CACTGCACTCTCC-GC---------G--TCCGT-CTGTAAAAAAAAAATAACGGGACTGAC------------------GGC---------GG---C-CCC---AAAGCAAC----AAAACAACAATAACAATAACAA---------------------CACATCAAATG------GCATTTGCAG------------------------------------TCGTCTAATTGGAATT--TGTGCAAAAAGAAG-TGGAGAAGGA----------GG-AGAAGGAGAAGGAG-AGGTGGTGGTGGAGAAGAAA-T-----------GCCAA
droBip1 scf7180000395456:12008-12289 - ---------------------------------------------------------------------------------------------------------------------------TAAATGAATATTAATTGCC----------------------------------GAGGTCATCAGCGGTGCTCCTCCTCCTCCTCA-----------------TCCT--C-------------------CTCCTTTCTCTGCAAT------CTCTCTCCTCTCCTTGTTTCA--------TGC-GC---GCT--ACTCTCT----------T--CT------------------AACTGCACTCTCC-G-------------CGCGT-CTGT------AAAATAACGGGACTGAC------------------GGC---------GGCGGC-CCC---AAAGCC------CCAACAACAACA-----------------------------------TCAAATG------GCATTTGCAG------------------------------------TCGTCTAATTGGAATT--TGTGCAAAAAGAAGACGAAGGAGGA----------GG-AGGAGCAGAAGGAGAAGGAGGTGGTGGAGAAGAAA-T-----------ACCAA
dp5 XL_group1e:271417-271741 - CGCGGCATCATCCAACACACAGCACACATACAAATGTACAACATAAAACGTATTTT---TAATTGTAACAA------------------------------------------A-AA-----ATAAATGAATATTAATTGACTATCAGGCAAGCAATGCACTCT-------TGTCGGAGGTCATCAGCAATGACT------------------------------------------------------------------------GC---------------------------------------ACTG--C--------------------------------------------------T----GCTCCGTTTGTCTCTGTGT-CTGT------GAAATAACGGGACTAGCAGCAGCAGCGGCGGTGGCGGCGGCGGCGGCGGCGGC-TGCATT------------AGAAAAGCAACA-----------------------------------GCAAACG------GAATTTGCAGACAGCGGTT------CCACTGCTTTCCTCCCTCACCCCCTCTAATTGGAATT--TGTGGAAA-----------------TA------TAAA-AG------------------------------AAA-T-------------GTT
droPer2 scaffold_60:60087-60402 + CGCGGCATCATCCAACACACAGCACACATACAAATGTACAACATAAAACGTATTTT---TAATTGTAACAA------------------------------------------A-AA-----ATAAATGAATATTAATTGACTATCAGGCAAGCAATGCACTCT-------TGTCGGAGGTCATCAGCAATGACT------------------------------------------------------------------------GC---------------------------------------ACTG--C--------------------------------------------------T----GCTCCGTTTGTCTCTGTGT-CTGT------GAAATAACGGGACTAGCAGCAGCAGCGGCGGTGGCGGC---------GGCGGC-TGCATT------------AGAAAAGCAACA-----------------------------------GCAAACG------GAATTTGCAGACAGCGGTT------CCACTGCTTTCCTCCCTCACCACCTCTATTTGGAATT--TGTGGAAA-----------------TA------TAAA-AG------------------------------AAA-T-------------GTT
droWil2 scf2_1100000004590:2844617-2844861 - TGTGAAT--------------------------------------------------------------A----AAAATA------GAA-------------------AAGAAG-AA-----TTAAATGAATATTAATCAACG---------------GACCTT-------TTTC------------------------------------------------------------CA--TGCC-----------------------------------------------------------TACCCC---AAC--CCCTCCGCCGAGGTCAA----C----------------GCAAATGC-----------------------------------------CTAACGGGAC----------------------------------------------------------------AACAACAGCAATTGCAACTGTCTCTGTCACTCCCATTGCACGTCTAGTG------CCA-------------------------G--------TGCCTAGCCTCGTCTAATTGGAATT--TGTGCAAGACAAAA-CAAAAAAAAG----------AA-AGAAATATTTCAAA-AGC------------------CGCAAAACAAAAAGAAA
droVir3 scaffold_12970:9791432-9791725 - GTTG-------------CATTTCGTCT------------------------------------------A----TAAATAAAACA-GAACAACAGCAACAATATCATCG---AAA--TCTA-TTTAATGAATATTAATTGGCTATCAAGCGTGCAGTGCAGTCCGAGATGAAG-ACGAGGTCACAGAGTCT---------GCCTCTCA-----------------ACCT--C------------TCTCTATC------------------------------TGTT----------TCT------------------------T--TGTGC--T--AT----------------GACAGTGT--TG------TGTGTGTGTGTGTGTGT-ATGA------GAAATAACGGGACTAGCAG------------------------------------------------A----CAAACAACAATA-----------------------------------ACAAATG------GCATTTGCAC--------TGC-----------------------TCTTGTCTAATTGGAATTTTTGTGCCAA-----------------AG-------------------------------------------AAA-TGCTTAAAACAAGCTCA
droMoj3 scaffold_6473:11776293-11776584 + GTTG-------------CATTTCGTCT------------------------------------------A----TAAATAAAACAAGAACAACAGCAACATCGTCTTCG---GAA--TCTA-TTTAATGAATATTAATTGGCTATCAAGCGTGCAGTGCAGTCCGAGATGAAG-TCGAGGTCACAAAGTCT------------------------------------------GCCGCTCAGCCTCCTCTTC------------------------------ATT-----------TCT------------------------TTGTGCTCTA----C----------------GCCAATGCTGTTTGT-G---------TGTGTGTGT-GTGA------GAAATAACGGGACTAGCAG------------------------------------------------A----CAAACAACAATA-----------------------------------ACAAATG------GCATTTGCG--------CTGC-----------------------TCTTGTCTAATTGGAATTGTTGTGCCAA-----------------AG-------------------------------------------AAA-TGCTTAAAATAAGCTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCGGAGTCATCTGTTCCATTGCGCAC------------------------------------------A----A-AACAAAACAAGA------------------------AGA-ATTCATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCTC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------GAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAAACAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAAT..................................................................................................................................................................2312.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATT......................................................................................................................................................2712.00200100000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAA.....2612.00200000020000000000
.............................................................................................................................................................................................................................................................................................TTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-C........................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGC------GAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------AC......................................................................................................................................................................2411.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCTGT-CTGC------GAAATAACGGGACT-----------------------------------------------------------------CAAC............................................................................................................................................................................................................2711.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCG---------------------CATCGTCTAATTGGAATT--TG.........................................................................................2511.00100000010000000000
.......................................................................................................................................................................ATCAAG-GGGAGGTCATTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
.......................................................................................................................................AATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTGT-CTGC------GAAATAACGGGAC..................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCGAA......................................................................................................................................................2711.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................AT------------------AACTGCACTT----GC------------TCTGT-CTGC------G..............................................................................................................................................................................................................................................................................................2411.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GC.........................................................................................................................................................2411.00100000001000000000
.................................................................................AACAAGA------------------------AGA-ATTCATGTAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
......................................................................................................................................................................CATCAAG-GGGAGGTCATTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
droSec2
TGCGGAGTCATCTGTTCCATTGCACAC------------------------------------------A----A-AACAAAACAAGA------------------------AGA--GACATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCTC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------GAAATAACGGGAGT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAAACAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................GTCATCAAG-GGGAGGTCATTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..........................................................................................................................................AGCCC---------------------GTCATCAAG-GGGAGGTCATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
dm3
TGCGGAGTCATCTGTTCCATTGCGCAC------------------------------------------A----T-AACAAAACAAGA------------------------AGA--GACATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------GAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATT------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGAAAACAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
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Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.....................................................................................................................................................................TCATCAAG-GGGAGGTCATTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTCTAATTGGAATT--TGTG.......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGT-CTGC------GAAATAACGGGACT-----------------------------------------------------------------C...............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CTTTCGCTCGTCCGCTCCCCC------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................TGGCTAT--------------------------------------TTCTTTCGCTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATCTGTTCCATTGCGCAC------------------------------------------A----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TAT--------------------------------------TTCTTTCGCTCGTCCGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........CATCTGTTCCATTGCGCAC------------------------------------------A----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TAATAGCCC---------------------GTCATCAAG-GGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................TCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG---------------------CATCGTCTAATTGGAATT--TGTG.......................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AC------------------------------------------A----T-AACAAAACAAGA------------------------AGA--GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAGA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTAAAG........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGATGGCTGCCGCCG---------------------...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATTAATAGCCC---------------------GTCATCAAG-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................AGCCC---------------------GTCATCAAG-GGGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TAAATGAATATTAATAGCCC---------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGCACTT----GC------------TCTGT-CTGC------GAAATAACG......................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGTA...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................CGCTCGTCCGCTCCCCC------------------------------ATG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TCGTCCGCTCCCCC------------------------------AGTTTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................C------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACA..................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................T-CTGC------GAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AAG-GGGAGGTCATTGGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TGGCTAT--------------------------------------TTCTTTCGCTCGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GA--GACATGTAAATGAATATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG---------------------CATCGTCTAATTGGAATT--TGTGT......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTGCGCAC------------------------------------------A----T-AACAAAACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................A------------------------AGA--GACATGTAAATGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AATAGCCC---------------------GTCATCAAG-GGGAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................C------------TCTGT-CTGC------GAAATAACGGGAC..................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CATCAAG-GGGAGGTCATTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGT............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................T-AACAAAACAAGA------------------------AGA--GACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGT............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATT--TGTGCAAA-----------------GAAGA--------------------------------------------GG...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ACTGCACTT----GC------------TCTGT-CTGC------GA.............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AACTGCACTT----GC------------TCTGT-CTGC------GAA............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ACTGCACTT----GC------------TCTGT-CTGC------G..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCG---------------------CATCGTCTAATTGGA................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....AGTCATCTGTTCCATTGCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCGCAC------------------------------------------A----T-AACAAAACAAGA------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CTTTCGCTCGTCCGCTCCCCC------------------------------AGTTT................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--TGTGCAAA-----------------GAAGA--------------------------------------------GGCGT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCG---------------------CATCGTCTAATTGGAATT--...........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCTAATTGGAATT--TGTGCA.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
TGTGGAGTCATGTGTTCCACTGCACAC------------------------------------------A----AAAACAAGACAAGA------------------------AAA--GCCATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------AAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------AGCGTTGAGAAAACAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................TCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................2711.0010000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGGCTGCCGCCG---------------------CATCGTCT.......................................................................................................2711.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--TGTGCAAA-----------------GAAGA--------------------------------------------AGCGT............2111.0010001000
droYak3
TGTGGAGTCATGTGTTCCACTGCACAC------------------------------------------A----AAAACAAGTCAAGG------------------------AAA--GCCATGTAAATGAATATTAATAGCCC---------------------GTCATCAAG-GGGAGGTCATTGGCTAT--------------------------------------TTCTTTCGCTCGTCCGCTCCCCC------------------------------AGTTTCGCC------------------------------------------T--AT------------------AACTGCACTT----GC------------TCTGT-CTGC------AAAATAACGGGACT-----------------------------------------------------------------CAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCTGCCGCCG---------------------CATCGTCTAATTGGAATT--TGTGCAAA-----------------GAAGA--------------------------------------------AGCGTAAAGA-AACAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------------CATCGTCTAATTGGAATT--...........................................................................................2011.00100000010000
droEug1
TGCAAAGGCAT----------------------------------------ATTTT---TAATTGTAGCA-------ACAAAACA-GAA---------------------GCAA-AA-----CTAAATGAATGTTAATTGCCCATC---------------------ATCAAG-TGGAGGTCATTGGCTAT--------------------------------------CTCTTTCC--TGCTTGCTCCACC------------------------------TCTT---CC------------------------------------------T--CC------------------AACTGCACTC----GC------------TGTGT-CTGC------AAAATAACGGGACTAAC------------------GGC---------AG----CCAG---TAAGAA------ACAACAACAACA-----------------------------------ACAAATG------GCATTTGCAGATGGCGGCCGC------------------------TTCATCTAATTGGAATT--TGTGAAAA-----------------AAA-----TAGA-AG------------------------------AAA-T-----------ACAAASizeHit CountTotal NormTotal
No Reads
droBia1
TGCAAAGTCAT----------------------------------------ATTTT---TAATTGTAACGGA--------------------------------------GGCA-AA-----CTAAATGAATATTAATTGCCCACCA------------------------GG-CGGAGGTCATCGGCTATC---------------G-----------------GACCCTCTCTCGCCC--------CCC---------------------------------------TCC-------------G-------------------CGCGCCCC--GC------------------CACTGCACTC----GTTGTGTGTGTGTGTGTGT-CTGC------AGAATAACGGGACTAAC------------------GGC---------AG----CCA-ACT------------GCAGGAACAAC------------------------------------ACAAATG------GCATTTGCAGATGGCGGC---------------------------TTCGTCTAATTGGAATT--TGTGCAACAAGAACAC-AGGCAGAAACGGA-AACAGA-AG---------A--------------------AAC-T-----------AAAACSizeHit CountTotal NormTotal
No Reads
droTak1
TGCAAAGTCAT----------------------------------------ATTTT---TAATTGCGGCCGA--------------------------------------GAAA-AC-----CTAAATGAATATTAATTGCCCATCA------------------------AG-CGGAGGTCATTGGCTAT--------------------------------------CTCGCTCGCTCTACCCCTCCCCC------------------------------TCCTCCCTC-----------------------------------GGCCCCAT--CT------------------AACTGCACTC----G--------------CTGT-CTGC------GAAATAACGGGACTAAC------------------GGC---------GGA--G-CGC---AAA---------GCAACAACAACA-----------------------------------ACAAATGGCAAAGGCATTTGCAGATGGCGGCCGC------------------------CTCGTCTAATTGCAAC--------AAA--------------------------------------------------------------------------AACAACAAASizeHit CountTotal NormTotal
No Reads
droEle1
TGCAAAGTCAT----------------------------------------ATTGT---TAATTGTTGCAG-----AGGAAAACT-GAA---------------------G-AA-AA-----CTAAATGAATATTAATTGCCCAACG------------------------AG-TGGAGGTCACTATTTGTGGT-----------------------------------CTCGCTTG--------CTCCCCC------------------------------T-----TCTCCACGGCAGCGTGCCCC---ACT--CCTCTCC----------C--CT------------------AACTGCACTCTGC-GC------------TCTGT-CTGC------AAAATAACGGGACTAAT-------------------------------------------------------------------------------------------------------------------GCATTTGCAGATGGCGGCTG-------------------------ATTTTCTAATTGGAATT--TGTGCAACAA------------------AA--------------------------------------------AACATAGAGA-AACAAASizeHit CountTotal NormTotal
No Reads
droRho1
TGCAAAGTCAT----------------------------------------ATTGT---TAATTGTAACAG-----AGGAAAACA-GAA---------------------G-AA-TA-----CTAAATGAATATTAATTGCCCATCG------------------------AG-TGGAGGTCATTGATGGCGCT-----------------------------------CTCGCTCG--------CTCCCCT------------------------------CTTTTC----CACCGCATTGTGCCGC---ACT--CCTTCCT----------C--CT------------------AACTGCACTCCGT-GC------------TCTGT-CTGC------AAAATAACGGGACTAAT-------------------------------------------------------------------------------------------------------------------GCATTTGCAGATGGCGGCTGC-------------------------TTTTCTAATTGGAATT--TGTGCAACAA------------------AA--------------------------------------------AACATAGAGA-AACAAASizeHit CountTotal NormTotal
No Reads
droFic1
TGCAAAGTCGT----------------------------------------ATTTTTATTAATTGTAACAGA--A-----AAACA---------ACAAGAACA-----AAA-AGAAA-----CTAAATGAATATTAATTGCCCATCA------------------------AG-TGGAGGTCATTGGCGTT--------------------------------------CTCGCTCTCTC--------CCT-----------G--------CC---------T-----GCTTT--CGTATAGTGCCGC---TTGCCTCTCTCT----------T--CT------------------AACTGCACTC----G--------------CTGT-CTGC------AAAATAACGGGACTAAC------------------GGC---------AA---GCC-A---GAAGCAACACCGAAAACAACAACA-----------------------------------ACAATTG------GCATTTGCAGATGGCGGCTGC------------------------TTCGTCTAATTGGAATT--TGTACAAA-----------------AACAAAAACCGA-AG------------------------------AAAAATCATAGCGA-AACAAASizeHit CountTotal NormTotal
No Reads
droKik1
TGCA----CAT----------------------------------------TTTTT---TAATTGTGACAA-----------------------------------------AA-AA-----CTAAATGAATATTAATTGCCCATC------------------------CAG-GCGAGGTCATCT-CTCT------------TGTCT-----------------CT--GTCGC-------------------GCTCTCGCTGAAATGCACCGTTTTTT-CGCTTTTCGCC------------------------------------------T--AGGCTGCACCGACCTCTC--GCTCGCACTCTCTCGC--------AG--TGTGTGCTGC------GAAATAACGGGACCG---------------------------------------------------------------ACAAGA-----------------------------------ACAAATG------GCATTTGCAGATGGCGGCGGCCGTTC------------------GCTCGTCTAATTGGAATT--TGTGCAAA-----------------ACAAA-AACAGAAAG------------------------------AAG-T-----------GTTCASizeHit CountTotal NormTotal
No Reads
droAna3
GCCGGAGCAAA-------------------------------------CGCAGTTT---TAATTGTAGCGAAAAA----AAAAAAAAAA---------------------CAAA-AA-----CTAAATGAATATTAATTGCC----------------------------------GAGGTCATCAGCGGTGCTCCCCATTTTCCCCCCACCACCATCACCACCAA-----C-------------------CTCCTTTCTCTGCAAT------CTTTTT-CTCTCCTTGCTTTA--------TGC-GCGCTG--CTGCTCTCT----------TCTAA------------------CACTGCACTCTCC-GC---------G--TCCGT-CTGTAAAAAAAAAATAACGGGACTGAC------------------GGC---------GG---C-CCC---AAAGCAAC----AAAACAACAATAACAATAACAA---------------------CACATCAAATG------GCATTTGCAG------------------------------------TCGTCTAATTGGAATT--TGTGCAAAAAGAAG-TGGAGAAGGA----------GG-AGAAGGAGAAGGAG-AGGTGGTGGTGGAGAAGAAA-T-----------GCCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................AAA----AAAAAAAAAA---------------------CAAA-AA-----CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA----------GG-AGAAGGAGAAGGA........................................18100.101010000
..........................................................................A----AAAAAAAAAA---------------------CAAA-AA-----CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081010000
droBip1
---------------------------------------------------------------------------------------------------------------------------TAAATGAATATTAATTGCC----------------------------------GAGGTCATCAGCGGTGCTCCTCCTCCTCCTCA-----------------TCCT--C-------------------CTCCTTTCTCTGCAAT------CTCTCTCCTCTCCTTGTTTCA--------TGC-GC---GCT--ACTCTCT----------T--CT------------------AACTGCACTCTCC-G-------------CGCGT-CTGT------AAAATAACGGGACTGAC------------------GGC---------GGCGGC-CCC---AAAGCC------CCAACAACAACA-----------------------------------TCAAATG------GCATTTGCAG------------------------------------TCGTCTAATTGGAATT--TGTGCAAAAAGAAGACGAAGGAGGA----------GG-AGGAGCAGAAGGAGAAGGAGGTGGTGGAGAAGAAA-T-----------ACCAASizeHit CountTotal NormTotal
No Reads
dp5
CGCGGCATCATCCAACACACAGCACACATACAAATGTACAACATAAAACGTATTTT---TAATTGTAACAA------------------------------------------A-AA-----ATAAATGAATATTAATTGACTATCAGGCAAGCAATGCACTCT-------TGTCGGAGGTCATCAGCAATGACT------------------------------------------------------------------------GC---------------------------------------ACTG--C--------------------------------------------------T----GCTCCGTTTGTCTCTGTGT-CTGT------GAAATAACGGGACTAGCAGCAGCAGCGGCGGTGGCGGCGGCGGCGGCGGCGGC-TGCATT------------AGAAAAGCAACA-----------------------------------GCAAACG------GAATTTGCAGACAGCGGTT------CCACTGCTTTCCTCCCTCACCCCCTCTAATTGGAATT--TGTGGAAA-----------------TA------TAAA-AG------------------------------AAA-T-------------GTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................TGT------GAAATAACGGGACTAGCAGCAGCAG......................................................................................................................................................................................................................................................................2811.0010100000000
................................AATGTACAACATAAAACGTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGGCGGCGGCGGCGGCGGC-.........................................................................................................................................................................................................................................24100.1010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGGCGGTGGCG...........................................................................................................................................................................................................................................................18140.0710100000000
droPer2
CGCGGCATCATCCAACACACAGCACACATACAAATGTACAACATAAAACGTATTTT---TAATTGTAACAA------------------------------------------A-AA-----ATAAATGAATATTAATTGACTATCAGGCAAGCAATGCACTCT-------TGTCGGAGGTCATCAGCAATGACT------------------------------------------------------------------------GC---------------------------------------ACTG--C--------------------------------------------------T----GCTCCGTTTGTCTCTGTGT-CTGT------GAAATAACGGGACTAGCAGCAGCAGCGGCGGTGGCGGC---------GGCGGC-TGCATT------------AGAAAAGCAACA-----------------------------------GCAAACG------GAATTTGCAGACAGCGGTT------CCACTGCTTTCCTCCCTCACCACCTCTATTTGGAATT--TGTGGAAA-----------------TA------TAAA-AG------------------------------AAA-T-------------GTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGTGAAT--------------------------------------------------------------A----AAAATA------GAA-------------------AAGAAG-AA-----TTAAATGAATATTAATCAACG---------------GACCTT-------TTTC------------------------------------------------------------CA--TGCC-----------------------------------------------------------TACCCC---AAC--CCCTCCGCCGAGGTCAA----C----------------GCAAATGC-----------------------------------------CTAACGGGAC----------------------------------------------------------------AACAACAGCAATTGCAACTGTCTCTGTCACTCCCATTGCACGTCTAGTG------CCA-------------------------G--------TGCCTAGCCTCGTCTAATTGGAATT--TGTGCAAGACAAAA-CAAAAAAAAG----------AA-AGAAATATTTCAAA-AGC------------------CGCAAAACAAAAAGAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAA-CAAAAAAAAG----------AA-AGAAA................................................2320.50100010
droVir3
GTTG-------------CATTTCGTCT------------------------------------------A----TAAATAAAACA-GAACAACAGCAACAATATCATCG---AAA--TCTA-TTTAATGAATATTAATTGGCTATCAAGCGTGCAGTGCAGTCCGAGATGAAG-ACGAGGTCACAGAGTCT---------GCCTCTCA-----------------ACCT--C------------TCTCTATC------------------------------TGTT----------TCT------------------------T--TGTGC--T--AT----------------GACAGTGT--TG------TGTGTGTGTGTGTGTGT-ATGA------GAAATAACGGGACTAGCAG------------------------------------------------A----CAAACAACAATA-----------------------------------ACAAATG------GCATTTGCAC--------TGC-----------------------TCTTGTCTAATTGGAATTTTTGTGCCAA-----------------AG-------------------------------------------AAA-TGCTTAAAACAAGCTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................TCTCA-----------------ACCT--C------------TCTCTATC------------------------------TGT..................................................................................................................................................................................................................................................................................................................................................................................................................2114.004000000000000000000000000002000000000200000000000000000000000000
........................................................................................ACAACAGCAACAATATCATCG---AAA--TC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................TGCAGTCCGAGATGAAG-ACGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................TCTCA-----------------ACCT--C------------TCTCTATC------------------------------TGTT----------T......................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
..TG-------------CATTTCGTCT------------------------------------------A----TAAATAAAACA-GA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................TCTCA-----------------ACCT--C------------TCTCTATC------------------------------TG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................ACGAGGTCACAGAGTCT---------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................GCTATCAAGCGTGCAGTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT-ATGA------GAAATAACGGG....................................................................................................................................................................................................................................................................................2211.001000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GAGGTCACAGAGTCT---------GCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................TCTCA-----------------ACCT--C------------TCTCTATC------------------------------TGTT----------C......................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................GCAGTGCAGTCCGAGATGAAG-ACGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TCTCA-----------------ACCT--C------------TCTCTATC------------------------------TGTT----------.......................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CT------------------------T--TGTGC--T--AT----------------GACAGTGT--TG------TG.........................................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TG------TGTGTGTGTGTGTGTGT-AT.......................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
GTTG-------------CATTTCGTCT------------------------------------------A----TAAATAAAACAAGAACAACAGCAACATCGTCTTCG---GAA--TCTA-TTTAATGAATATTAATTGGCTATCAAGCGTGCAGTGCAGTCCGAGATGAAG-TCGAGGTCACAAAGTCT------------------------------------------GCCGCTCAGCCTCCTCTTC------------------------------ATT-----------TCT------------------------TTGTGCTCTA----C----------------GCCAATGCTGTTTGT-G---------TGTGTGTGT-GTGA------GAAATAACGGGACTAGCAG------------------------------------------------A----CAAACAACAATA-----------------------------------ACAAATG------GCATTTGCG--------CTGC-----------------------TCTTGTCTAATTGGAATTGTTGTGCCAA-----------------AG-------------------------------------------AAA-TGCTTAAAATAAGCTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................GTCT------------------------------------------GCCGCTCAGCCTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................AG-TCGAGGTCACAAAGTCT------------------------------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAATAACGGGACTAGCAG------------------------------------------------A----CAAACAAC...............................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAAACAACAATA-----------------------------------ACAAATG------GCA........................................................................................................................................................2311.001000010

Generated: 05/18/2015 at 10:34 PM