ID:

dsi_28514

 Coordinate:

3r:12309047-12309304 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.3 -30.1 -30.0

Flybase annnotation

five_prime_UTR [3r_12309305_12309407_+]; exon [3r_12309305_12309540_+]; five_prime_UTR [3r_12308816_12309046_+]; exon [3r_12308816_12309046_+]; intron [3r_12309047_12309304_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCAAACATCCAGCAGTGCAACAACACCCACACTAAAAACAAATTTTCAGGTGAGTAAATTAAGAAAACACAGAATGCCCAGGTGAATTACACAAATTCAGAGTCATATATGTGGAGCACAAATGTGTGTACGTGTGTGGCGCAGACTTTAAAGTCAGTCGAGAAAAACCGACTGAACATAATCAACTGGCAATGCACGACACGTAGGCAGAAAAGTAAAACAAATTTGCAGTTTGCAGAGAGTAAGGCAACGTATTATCTATATACATGTCTCTGATAATCGCTCTTAAACTCTGGGTACTCCACAGTTCTTCGCCAGATGTTCAAACGTCGCCTCGCCAGCAACCGAAACCGAATT
***************************************************************************************************...((((((((((((..((((....)))).)))))))))))).(((...(((...(((((((........)))))))...)))....)))............************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................................AGAGTCATATATGTGGAGCA............................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................GAAAAACCGACGGAACGTA................................................................................................................................................................................. 19 2 2 2.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTTCAAACGTCGCCTCGCCAGCAACC........... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................TAATCAACTGGCAATGCACGAC............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................AAAAACCGACGGAACGTA................................................................................................................................................................................. 18 2 5 1.00 5 5 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCAGTTCTTCGCCAGATGTTCAAACGT........................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................GGAGCACAAATGTGTG..................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................ATCGCTCTTAAACTCTGGG............................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................AAAACCGACGGAACGTA................................................................................................................................................................................. 17 2 12 0.58 7 6 0 0 1 0 0 0 0 0
..................................................................................................................................................................GAAAAACCGACGGAACGT.................................................................................................................................................................................. 18 2 6 0.50 3 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGAAAAACCGACGGAACGTA................................................................................................................................................................................. 20 3 8 0.38 3 2 0 0 0 0 0 0 0 1
.....................................................................................................................................................................AAACCGACGGAACGTA................................................................................................................................................................................. 16 2 20 0.15 3 2 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................AAACTCTAGATATTCCACAGT................................................. 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TGCACGACAAGTAGG...................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................TGAAAAACCGACGGAACCTA................................................................................................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0
.........................................................................................................ATATATTTGGACCACAAAT.......................................................................................................................................................................................................................................... 19 2 9 0.11 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAACCGACGGAACGTAT................................................................................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAAAAACCGACGGAACG................................................................................................................................................................................... 17 2 20 0.10 2 1 0 0 0 0 0 0 0 1
...................................................................................................AGAGTCATCTATGTCGA.................................................................................................................................................................................................................................................. 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................GAAAATCCGACGGAACGTA................................................................................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAACCGACGGAACGT.................................................................................................................................................................................. 17 2 19 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTGCAGTTTGCACAGAC................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AGAGAGTCAGGCATCG......................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GGGTTTGTAGGTCGTCACGTTGTTGTGGGTGTGATTTTTGTTTAAAAGTCCACTCATTTAATTCTTTTGTGTCTTACGGGTCCACTTAATGTGTTTAAGTCTCAGTATATACACCTCGTGTTTACACACATGCACACACCGCGTCTGAAATTTCAGTCAGCTCTTTTTGGCTGACTTGTATTAGTTGACCGTTACGTGCTGTGCATCCGTCTTTTCATTTTGTTTAAACGTCAAACGTCTCTCATTCCGTTGCATAATAGATATATGTACAGAGACTATTAGCGAGAATTTGAGACCCATGAGGTGTCAAGAAGCGGTCTACAAGTTTGCAGCGGAGCGGTCGTTGGCTTTGGCTTAA
*************************************************************************************************************************************************************...((((((((((((..((((....)))).)))))))))))).(((...(((...(((((((........)))))))...)))....)))............*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
................................................................................................................................................................................................................................................................................................................TGTCAAGAAGCGGTCTACAAGT................................ 22 0 1 3.00 3 3 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CAAGAAGCGGTCTACAAGTTT.............................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................TTTTTGGCTGACTTGTATTAGT............................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0
GGGTTTGTAGGTCGTCACGTT................................................................................................................................................................................................................................................................................................................................................. 21 0 2 1.50 3 3 0 0 0 0 0 0 0
............................................................................................................ATACACCTTTTGTTAACACACAT................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................TTGTATTAGTTGACCGTTACGTGCT.............................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TCAAGAAGCGGTCTACAAGTT............................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TTACGTGCTGTGCATCCG..................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................TTCCCTTGCAGAATAGAGAT.............................................................................................. 20 3 2 1.00 2 0 0 0 0 1 1 0 0
......................TTGTGGGTGTGATTTTTGT............................................................................................................................................................................................................................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0
....................TGTTGTGGGTGTGATTTTTG.............................................................................................................................................................................................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TCCCTTGCAGAATAGAGAT.............................................................................................. 19 3 9 0.33 3 0 0 0 0 2 1 0 0
......................................................................GTCTCACGGGTCGACTTA.............................................................................................................................................................................................................................................................................. 18 2 9 0.33 3 0 0 0 0 2 1 0 0
...........................................................................................................................................................GTCATCTCTCTTTGTCTGACT...................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1
.............ATCACGTTGTTGAGGTTGTGAT................................................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................CAGCTGCTTTTGGCTAACTT..................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 1 0 0
......................TTGTGGGTGTGATCTGTTT............................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:12308997-12309354 + dsi_28514 CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTAA---GAAAACA-----CAG-AATGCCCAGGTG---------------AATTACACAAA-TTCAGAGTCATATA---------------------------------------TGTGGAGC---------------------------------------ACAAA----TGTGTGTACGTGTGT---------GGCGCAGACTTTAAAGTCAG---TCGAGAAAAAC-CGACTGAACA------------TAATCAACTG----GCAATG----CACGACACGTAGGCAGAA-AAG-------------TAAAACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----------------------------AACGTATTATCTATAT-----A-CATGT--CTCTGATAATCGCTCT--TAAACTCTGGGTAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------GAAACCGAATT
droSec2 scaffold_0:13140447-13140804 + CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTAA---GAAAACT-----CAC-AATGCCCAGGTG---------------AATTACACAAA-ATCTGAGACATATA---------------------------------------CGTGGAGC---------------------------------------ACAAA----TGTGTGTACGTGTGT---------GGCGCAGACTTTAAAGTCAG---TCGAAAAAAAC-AGACTGAACA------------TAATCAACTG----GCAATG----CACGACACGTAGGCAGAA-AAG-------------TAACACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----------------------------AACGTATTATCTATAT-----A-CATGT--CTCTGATAATCGCTCT--TAAACTCTTGATAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------GAAACCGAATT
dm3 chr3R:8855827-8856185 - CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--CA---C-AAATTTTCAGGTGAGTAAATTAA---GAAAACA-----CAG-AATGCCCAGGTG---------------AATTACACAAA-TTCTAAGGCAAATA---------------------------------------TGTGGAGC---------------------------------------ACAAA----TGTGTGTGCGTGTGT---------GGCGCAGACTTTAAAGTCAG---TCGAGAAAACC-CGACTGAACA------------TAATCAACTG----GCAATG----TACGACACGTAGGCAGAA-AAG-------------TAAAACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----A-----------------------AACGTATTATCTATAT-----A-CATGT--CTCTGATAATCGCTCT--TCAACTCTGGGTAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTTAAACGTCG----------------CCTCGCCAGCAACC------------GAAACCGAATT
droEre2 scaffold_4770:12792749-12793105 + CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTG----GAAATCA-----CGG-AATACCCAGGTG---------------ATTTACAGAAA-TTCTGACACAAATA---------------------------------------TATGGAGC---------------------------------------ACAAA----TGTGTGTACGTAAGT---------GGCGCAGACTGAAAAGTCAG---TCGAGAAAAAC-CGACTGAACA------------AAATCATCTG----GCAATG----TACGACACGTAGGCAGAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----------------------------AACGTATTATCTATAT-----A-TATGC--CTCTGATAATCGCTCT--TCAACTCTTGGTAC--TTCGCAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------GAGACCGAATT
droYak3 3R:13150891-13151247 - CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTG----GAAAACA-----CGG-AATGCCCAGGTG---------------ATTTACAGAAA-TTCTGAGGCTAATA---------------------------------------TATGAAGC---------------------------------------ACAAA----TGTGTGTACGTAAAT---------GGCACAGACTGAAAAGTCAG---TCGAGAAAACC-CGACTGAACA------------AAATCATCTG----GCAATG----TACGACACGTAGGCAAAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAGAC-----------------------------CTCGTATTATCTATAT-----A-CATGT--CTCTGATAATCCCTCT--TCAACTCTTGGTAC--TCCACAGTT-----CTTCAC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------AAGACCGAATT
droEug1 scf7180000409802:1171026-1171386 + TCCAAATATTC--AGC-A--GTGCAACAACACTAAACCCAC----------ACGAAA--TA---C-AAATTTTCAGGTAAGTAAATA-----GAAATCC-----TAG-AATGTTCAGGTG---------------AATTTATGAAA-GGCGAGGCTATACA--A-------------------------------------------A---------------------------------------ACAAA----TAGATGT------AT---------AGCCTGGACATTAAAGTCAG---TCGGGGAAATCGAGACTGCTCT------------AAATCATCTG----GAAATG----TACGACACGTAGGCAGAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAAGC-----------------------------AACGTATTATCTATAT-----A-TAAGT--CTCTGATAACCGCTCT--TCAACTTTCG-TAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCATCAACCGAAACCGAAACCGAATCCGAATT
droBia1 scf7180000299102:1097703-1098053 + CCCAAACATTC--AGC-A--GGGCAACAACA--ACACACAC----------ACTAAA--TA---C-AAATTTTCAGGTGAGTAAGTG-----GCAATCG-----AAC-AATGACCAGGTG---------------AAATAAACCCA-TTTGG--GCACATAAGC-------------------------------------------A---------------------------------------ACACATGGATGTGTGTATA----G---------GCCCGGGAGTTTAAAGTCAG---TCGAGAAAAAG-CGACTGCCCC------------AAATGATCTG----GCAATG----TACGACACGTAGGCAGAAAAAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAAGC-----------------------------AACGTATTATCTATA--------CACGT--CTCTGATAATCGCTCT--TCAACTTTTG-CAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGCTTATACGTCG----------------CCTCGCCGTCAACC------------GAAACCGAATT
droTak1 scf7180000415653:6920-7277 + CCCCAACACTG--AGC-A--GTGCAACAACA--GCACCCAC----------ACTAAA--TA---C-AAATTTTCAGGTGAGTAAAGTA----GAA-ACG-----GATAATTGCCCAAGTG---------------AATTAAACAGA-ATCGG--GCATATAAAC-------------------------------------------A---------------------------------------AC--A----TTTGTTTACA----T---------GGCCGGGAGTTAAACGTCAG---TCGAAAACAAT-CGACTGCCCA------------AAATCATCTG----GCAATG----TACGACACGTAGGCAGAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAACGT-----AAAG---GC---------------AGCGTATTATCTATATGTACTA-TATGT--CTCTGATAATCGCTCT--TCAACTTTTG-TAC--TCCCCAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCATACGTCG----------------CCTAGCCATCAACC------------GAAACCGAATT
droEle1 scf7180000486474:154085-154418 - CCCGAACCTTT--AGC-AGAGTGCAAC--------ACCCAC----------ACTAAT--CA---C-AAATTTTCAGGTGAGTAAATCG-----GGATCG-----AGG-AATGCCCAGGTG---------------AAATATTCAGA-TTATGG-GTATATAGAC---------------------------------------AGATC---------------------------------------ACATA----T--------T----C---------AGTCAGCAGCTAGCAGTCAG---TGGAATAAGGC-CCAGTGCCCA------------CATTCATCTG----CCAATGAGC-GACGACACGTAGGCAGAA--AT-------------TAACACAAATTTGCAGTTTGCAGAGA----GTACAGC-----------------------------AGCGTATTATCTATA----------TGC--CTCTGATAATCTCTCT--TTAACTTTGC-CAC--TTCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG---------------------CCGTCAACC------------GAAACCGAATT
droRho1 scf7180000778053:67535-67863 - CC-GAACTTTT--ACC-A--GTGCAAC--------ATCCAC----------ACTAAA--CA---A-AAATTTTCAGGTGAGTAAATTG-----GGATCG-----AGG-AATGCCCAGGTA---------------AATTATTCAGA-TTATGGGA--TACAGAT---------------------------------------AGAAA---------------------------------------ATATA----T--------C----G---------CGCCCGGACTTAGCAGTCAC---TTGAAAAA-AC-CCAGTGCCCA------------AAATCATCTG----GCAATGTAC-GAAGACACGTAGGCAGAA--AG-------------TTACACAAATTTGCAGTTTGCTGAGA----GTAAAGC-----------------------------AACGTATTATCTATA----------TGT--CTCTGATAATCGCTCT--TTAATTTTGC-CAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCATACGTCG---------------------CCGTCAACC------------GAAACCGAATT
droFic1 scf7180000453800:1319298-1319631 - CCCGAATCTTT--AGC-A--GTGCAAT--------ACCCAC----------ACTAAA--TA---C-AAATTTTCAGGTGAGTAAATTATTGTGATTTTT-----TGG-AATGCCCAGTTG---------------AGTTGTTTAGA-TTTTGAGCTATATA-------------------------------------------GTTC---------------------------------------ACATA----TGT---------------------GCCCAGGAACTAAAAGTCAGAGTTAGGGAAAGAG-TCACTGCGTC------------AAAGCAGCTG----GGAATG----TAAGACACGTAGGCAGAA--AG-------------TAAAACAAATTTGCAGTTTGCAGAGA----GTAAAGC-----------------------------AACGTATTATCTATC----------TGT--CTCTGATAATCGCTCT--TTAACTTTTG-CAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAGCGTCG---------------------CCATCAACC------------GAAACCGAATT
droKik1 scf7180000302634:826562-826946 - ACCTAAGAAC---------------AC--------AACAAA----------ATTAAA--TA---C-ACTTTTTCAGGTAAGAAACTA-----------------------TGACTTGGAG---------------CTTTAAATCAC-TAA--------ATAGGC------------------------------------TTTAAAAC---------------------------------------ACAAA----C--------T----G-----ACCCGGCCAGGAGTTCTATCTCAG---TTGAGAAACCC--------CCA------------AATTCACCAG----GCAATGAACATACGACACGTACGCAAAA-AAT-------------AAATACAAAATTGCAGTA-----AGA----GTAAAGCAACGTTCTCTGGACA------GAGTGTCAGCCTTATTATCTACTC-----GGTATGT--CTCTGATAATCTCTGT--TTAACTTTTG-CAC--CTCCCAGTT-----CTTCATCA-------------------------C--------GCACACGC-ACAC---AGACGCCGTAGCAGGC-----------------------------------------------AGCAACAGATGTACATACGTGGTGGCAGCCGTATCCGACTACATTATCACCC------------GAAACCGAATT
droAna3 scaffold_13340:9323713-9324126 + GTAGGACAA----AGCCAAAGTGCATCGCCT--ATACACAT----------AATAAGAATACCCCAAAATTTTCAGGTGAGCCACATAC---GAG--CCAAATACGA-ACTGGGTGGGTGGGAGA---AAACGTTAAATAAACAAAAGTCTCCAATTGCCA---------------------------------------CCTGATGT---------------TCA----------------------------------------TGTGACGTTAGCCAAGCCAGGAGTTAACAGTCAG---TCGATAAAAAG-ACACAGAAT---------------TCCATCTG----GCAATG----TACGACACGTAGGCAGAA--AG-------------CAGCACAAATTTGCAGTTAA-AGAGAGACAGTAACGC-----AATCCAGCCA------TCCAGT---CTGTATTATCTT------------CGC--CTCTGATAATCGCTCA--TTAATTTCTG---C--CCCTCAGTT-----CTTTACAGCAG----------------------C--------GCACACGA-AAGCAACAG------CAGCAAACA-------------------------------CC---------ATACACCAGCAGATGTCC-------------------------------GTGAACT------------GAATCCGAATT
droBip1 scf7180000396712:2945386-2945767 + CCCACACACAT--AAC-A--AGG--------------------------------AA--TACCCC-AAATTTTCAGGTGAGCCACATA-------AACA-----CAA-ACTGGGTAGGTGGGAAAAAAAAATGTAAAATAAACAAA-TACTCAAGCTGCCA---------------------------------------CCTGATGT---------------TCA----------------------------------------TGTGACTTTATCCAAGCCAAGAGTTTACAGTCAG---CCGGATAATAG-ACACAGAAC---------------TCCGTCTG----GCAATG----TACGACACGTAAGCAGAA--AG-------------CAGCACAAATTTGCAGTTAA-AGAGAGACAGTAACGC-----AATCCAGCCA------TCCAGT---CTGTATTATCTT------------CGC--CTCTGATAATCGCTCT--TTAATTTTTG---C--CCCTCAGTT-----CTTCACAGCAG----------------------C--------GCACACGA-AAGC---AG------CAGCGAACA-------------------------------GC---------ATACACCAACAGATGTCC-------------------------------GTGAACT------------GAATCCGAATT
dp5 2:11267569-11267582 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT------------GAAACCGAATT
droPer2 scaffold_0:9204086-9204538 - AAAGAACGTCT--AGC-A--GTGCACCACA---AC-CCCACGCCACACAACAGAAAA--CA---A-TACTTTTCAGGTAAGTAGGCTG-----TAGTAG-----G---CACA------------------ACG---------------------------C---TGTTGAGCCCGGATTTCGACAGTATAGGCCCAGTCCCTTGGCATACGGATGCCTTATATCAA------------------------------------------TTT---------GACTTGGACTTTTCAATCAT---A------GTAA-ACACTGCCT----------------ATTTCTT----GGAATG-------GACACGTAGACAAAA-CAC-------------GGCAATCAATTTTCAGTT------GA----ATAGTTC-----------------------------TCGGTATTATCTGTA------------T--CTCTGATAATCTCTCTCCTTAACTGTTG-CAGCGCCCGCAGTT-----ATTTATCACAAGACGCCAACATCAGTCATCGGACACACGACGGCACACGG-A--------------CAGCAAACA-----G-AAACGGCTGCCAAGCCAATCGAAGGCTTAGCACATACATAGCT----ACATACATACGTGGACGCTG---TG-----TCTCT-TGACTATT------------GAAACCGAATT
droWil2 scf2_1100000004902:11593624-11594080 - TTACAACAGCAGGAGC-A--GAACAAAAAA---ACTCCCAC----------GCCTAA--GA---C-AAATTTTCAGGTAAGCTATAA-----GACGTCT-----TTG-----------------------------------------------GCTTATC---------------------------------------TTTAACAGAA-----AGTGAAATTGATTTAGCTTTGATTTTTCCATCACACT----TATATGT--------------------------------------------TAAAAAG-TCACACAATCGACATTAAAGATCCAGCACTTGGACAACAATG----T---ACACGTAGACAAAA-TAGAGCCTCAAAATAGT-ATTTAAATTTGCAGTTAA-AGAGAGA--GTGTTAT-----AG-----TCATAGTCATTGAAT-ACACATATTATCTATGT-----A-TATATTTCTCATCTAATCGCTCT--TTAACTTTTG-CAC--CTCACAGTTCAGTTATTTAGCCGAAGACGA---------------GACACACAT--TTACACAAAAAAC---AA------CACCGAGCATAGCGGAGCACTGATGACATGCCAAGATC-------------------------AAGCATATACGTGGACGAAG----------TCTGA-AAACAATT-----------TGAAACCGAATT
droVir3 scaffold_12855:3959085-3959099 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------GAAACCGAATT
droMoj3 scaffold_6540:8265974-8265988 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------GAAACCGAATT
droGri2 scaffold_14906:6580414-6580428 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------GAAACCGAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTAA---GAAAACA-----CAG-AATGCCCAGGTG---------------AATTACACAAA-TTCAGAGTCATATA---------------------------------------TGTGGAGC---------------------------------------ACAAA----TGTGTGTACGTGTGT---------GGCGCAGACTTTAAAGTCAG---TCGAGAAAAAC-CGACTGAACA------------TAATCAACTG----GCAATG----CACGACACGTAGGCAGAA-AAG-------------TAAAACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----------------------------AACGTATTATCTATAT-----A-CATGT--CTCTGATAATCGCTCT--TAAACTCTGGGTAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------GAAACCGAATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................AGAGTCATATA---------------------------------------TGTGGAGC---------------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200002000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAACGTCG----------------CCTCGCCAGCAACC------------...........2611.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................TAATCAACTG----GCAATG----CACGAC.................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
...........................................................................................................................................................................................................GGAGC---------------------------------------ACAAA----TGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTCT--TAAACTCTGGG.......................................................................................................................................................................................................................1911.00110000000000000000
droSec2
CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTAA---GAAAACT-----CAC-AATGCCCAGGTG---------------AATTACACAAA-ATCTGAGACATATA---------------------------------------CGTGGAGC---------------------------------------ACAAA----TGTGTGTACGTGTGT---------GGCGCAGACTTTAAAGTCAG---TCGAAAAAAAC-AGACTGAACA------------TAATCAACTG----GCAATG----CACGACACGTAGGCAGAA-AAG-------------TAACACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----------------------------AACGTATTATCTATAT-----A-CATGT--CTCTGATAATCGCTCT--TAAACTCTTGATAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------GAAACCGAATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................AACT-----CAC-AATGCCCAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................A----TGTGTGTACGTGTGT---------GGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTGCAGAGA----GTAAG.................................................................................................................................................................................................................................................................................................................1911.0011000
........................................................................................................................................................AGACATATA---------------------------------------CGTGGAGC---------------------------------------ACAAA----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------------CCTCGCCAGCAACC------------GAAACCGAAT.2611.0010010
dm3
CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--CA---C-AAATTTTCAGGTGAGTAAATTAA---GAAAACA-----CAG-AATGCCCAGGTG---------------AATTACACAAA-TTCTAAGGCAAATA---------------------------------------TGTGGAGC---------------------------------------ACAAA----TGTGTGTGCGTGTGT---------GGCGCAGACTTTAAAGTCAG---TCGAGAAAACC-CGACTGAACA------------TAATCAACTG----GCAATG----TACGACACGTAGGCAGAA-AAG-------------TAAAACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----A-----------------------AACGTATTATCTATAT-----A-CATGT--CTCTGATAATCGCTCT--TCAACTCTGGGTAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTTAAACGTCG----------------CCTCGCCAGCAACC------------GAAACCGAATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................AC-----ACCCAC----------ACTAAA--CA---C-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AGGTGAGTAAATTAA---GAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACAAC-----ACCCAC----------ACTAAA--CA---C-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CA---C-AAATTTTCAGGTGAGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......ATCC--AGC-A--GTGCAACAAC-----ACCCAC----------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AACTG----GCAATG----TACGACACGTAGG..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................TAAGGCAAATA---------------------------------------TGTGGAGC---------------------------------------ACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCAACAAC-----ACCCAC----------ACTAAA--CA---C-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT-----A-CATGT--CTCTGATAATCGCTCT--TC................................................................................................................................................................................................................................2821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTTAA...........................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACACGTAGGCAGAA-AAG-------------T...................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAAACGTCG----------------CCTCGC...............................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTTAAACGTC......................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCGCAGACTTTAAAGTCAG---TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACGTCG----------------CCTCGCCAGC...........................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT--CTCTGATAATCGCTCT--T.................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------------CCTCGCCAGCAACC------------GAAACCGAA..2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTTAAACGTCG----------------CCTCGCC..............................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGTGTGCGTGTGT---------GGCGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCTATAT-----A-CATGT--CTCT................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCG----------------CCTCGCCAGCAAC........................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------------CCTCGCCAGCAACC------------GAAACCGAA..2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGA----GTAAGGC-----A-----------------------AACGTA............................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTCG----------------CCTCGCCAGCAACC------------GAAAC......2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTTAAACGTCG----------------CC...................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATCTATAT-----A-CATGT--CTC.................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GACTGAACA------------TAATCAACTG----GC...............................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CATGT--CTCTGATAATCGC.......................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GTGTGTGCGTGTGT---------GGCGCAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................AAA----TGTGTGTGCGTGTGT---------GGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................ATGCCCAGGTG---------------AATTACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GTGTGTGCGTGTGT---------GGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................A----TGTGTGTGCGTGTGT---------GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................................................................................................................................................................TGTGTGTGCGTGTGT---------GGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................AA----TGTGTGTGCGTGTGT---------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
droEre2
CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTG----GAAATCA-----CGG-AATACCCAGGTG---------------ATTTACAGAAA-TTCTGACACAAATA---------------------------------------TATGGAGC---------------------------------------ACAAA----TGTGTGTACGTAAGT---------GGCGCAGACTGAAAAGTCAG---TCGAGAAAAAC-CGACTGAACA------------AAATCATCTG----GCAATG----TACGACACGTAGGCAGAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAGGC-----------------------------AACGTATTATCTATAT-----A-TATGC--CTCTGATAATCGCTCT--TCAACTCTTGGTAC--TTCGCAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------GAGACCGAATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGTCG----------------CCTCGCCAGC...........................1912.0020001010
........................................................................................................................................................................................................TATGGAGC---------------------------------------ACAAA----TGTGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......................................................AA--AA---C-AAATTTTCAGGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................GTAAGT---------GGCGCAGACTGAAAAGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
....................................................................................ATTG----GAAATCA-----CGG-AATACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CC...................................2811.0010000100
droYak3
CCCAAACATCC--AGC-A--GTGCAACAAC-----ACCCAC----------ACTAAA--AA---C-AAATTTTCAGGTGAGTAAATTG----GAAAACA-----CGG-AATGCCCAGGTG---------------ATTTACAGAAA-TTCTGAGGCTAATA---------------------------------------TATGAAGC---------------------------------------ACAAA----TGTGTGTACGTAAAT---------GGCACAGACTGAAAAGTCAG---TCGAGAAAACC-CGACTGAACA------------AAATCATCTG----GCAATG----TACGACACGTAGGCAAAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAGAC-----------------------------CTCGTATTATCTATAT-----A-CATGT--CTCTGATAATCCCTCT--TCAACTCTTGGTAC--TCCACAGTT-----CTTCAC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCAGCAACC------------AAGACCGAATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAACGTCG----------------CCTCGCCAG............................2111.00101000000000
droEug1
TCCAAATATTC--AGC-A--GTGCAACAACACTAAACCCAC----------ACGAAA--TA---C-AAATTTTCAGGTAAGTAAATA-----GAAATCC-----TAG-AATGTTCAGGTG---------------AATTTATGAAA-GGCGAGGCTATACA--A-------------------------------------------A---------------------------------------ACAAA----TAGATGT------AT---------AGCCTGGACATTAAAGTCAG---TCGGGGAAATCGAGACTGCTCT------------AAATCATCTG----GAAATG----TACGACACGTAGGCAGAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAAGC-----------------------------AACGTATTATCTATAT-----A-TAAGT--CTCTGATAACCGCTCT--TCAACTTTCG-TAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG----------------CCTCGCCATCAACCGAAACCGAAACCGAATCCGAATTSizeHit CountTotal NormTotal
No Reads
droBia1
CCCAAACATTC--AGC-A--GGGCAACAACA--ACACACAC----------ACTAAA--TA---C-AAATTTTCAGGTGAGTAAGTG-----GCAATCG-----AAC-AATGACCAGGTG---------------AAATAAACCCA-TTTGG--GCACATAAGC-------------------------------------------A---------------------------------------ACACATGGATGTGTGTATA----G---------GCCCGGGAGTTTAAAGTCAG---TCGAGAAAAAG-CGACTGCCCC------------AAATGATCTG----GCAATG----TACGACACGTAGGCAGAAAAAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAAAGC-----------------------------AACGTATTATCTATA--------CACGT--CTCTGATAATCGCTCT--TCAACTTTTG-CAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGCTTATACGTCG----------------CCTCGCCGTCAACC------------GAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droTak1
CCCCAACACTG--AGC-A--GTGCAACAACA--GCACCCAC----------ACTAAA--TA---C-AAATTTTCAGGTGAGTAAAGTA----GAA-ACG-----GATAATTGCCCAAGTG---------------AATTAAACAGA-ATCGG--GCATATAAAC-------------------------------------------A---------------------------------------AC--A----TTTGTTTACA----T---------GGCCGGGAGTTAAACGTCAG---TCGAAAACAAT-CGACTGCCCA------------AAATCATCTG----GCAATG----TACGACACGTAGGCAGAA-AAG-------------TGATACAAATTTGCAGTTTGCAGAGA----GTAACGT-----AAAG---GC---------------AGCGTATTATCTATATGTACTA-TATGT--CTCTGATAATCGCTCT--TCAACTTTTG-TAC--TCCCCAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCATACGTCG----------------CCTAGCCATCAACC------------GAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droEle1
CCCGAACCTTT--AGC-AGAGTGCAAC--------ACCCAC----------ACTAAT--CA---C-AAATTTTCAGGTGAGTAAATCG-----GGATCG-----AGG-AATGCCCAGGTG---------------AAATATTCAGA-TTATGG-GTATATAGAC---------------------------------------AGATC---------------------------------------ACATA----T--------T----C---------AGTCAGCAGCTAGCAGTCAG---TGGAATAAGGC-CCAGTGCCCA------------CATTCATCTG----CCAATGAGC-GACGACACGTAGGCAGAA--AT-------------TAACACAAATTTGCAGTTTGCAGAGA----GTACAGC-----------------------------AGCGTATTATCTATA----------TGC--CTCTGATAATCTCTCT--TTAACTTTGC-CAC--TTCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAACGTCG---------------------CCGTCAACC------------GAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droRho1
CC-GAACTTTT--ACC-A--GTGCAAC--------ATCCAC----------ACTAAA--CA---A-AAATTTTCAGGTGAGTAAATTG-----GGATCG-----AGG-AATGCCCAGGTA---------------AATTATTCAGA-TTATGGGA--TACAGAT---------------------------------------AGAAA---------------------------------------ATATA----T--------C----G---------CGCCCGGACTTAGCAGTCAC---TTGAAAAA-AC-CCAGTGCCCA------------AAATCATCTG----GCAATGTAC-GAAGACACGTAGGCAGAA--AG-------------TTACACAAATTTGCAGTTTGCTGAGA----GTAAAGC-----------------------------AACGTATTATCTATA----------TGT--CTCTGATAATCGCTCT--TTAATTTTGC-CAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCATACGTCG---------------------CCGTCAACC------------GAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droFic1
CCCGAATCTTT--AGC-A--GTGCAAT--------ACCCAC----------ACTAAA--TA---C-AAATTTTCAGGTGAGTAAATTATTGTGATTTTT-----TGG-AATGCCCAGTTG---------------AGTTGTTTAGA-TTTTGAGCTATATA-------------------------------------------GTTC---------------------------------------ACATA----TGT---------------------GCCCAGGAACTAAAAGTCAGAGTTAGGGAAAGAG-TCACTGCGTC------------AAAGCAGCTG----GGAATG----TAAGACACGTAGGCAGAA--AG-------------TAAAACAAATTTGCAGTTTGCAGAGA----GTAAAGC-----------------------------AACGTATTATCTATC----------TGT--CTCTGATAATCGCTCT--TTAACTTTTG-CAC--TCCACAGTT-----CTTCGC------------------------------------------------------------------------------------------------------------------------CAGATGTTCAAGCGTCG---------------------CCATCAACC------------GAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droKik1
ACCTAAGAAC---------------AC--------AACAAA----------ATTAAA--TA---C-ACTTTTTCAGGTAAGAAACTA-----------------------TGACTTGGAG---------------CTTTAAATCAC-TAA--------ATAGGC------------------------------------TTTAAAAC---------------------------------------ACAAA----C--------T----G-----ACCCGGCCAGGAGTTCTATCTCAG---TTGAGAAACCC--------CCA------------AATTCACCAG----GCAATGAACATACGACACGTACGCAAAA-AAT-------------AAATACAAAATTGCAGTA-----AGA----GTAAAGCAACGTTCTCTGGACA------GAGTGTCAGCCTTATTATCTACTC-----GGTATGT--CTCTGATAATCTCTGT--TTAACTTTTG-CAC--CTCCCAGTT-----CTTCATCA-------------------------C--------GCACACGC-ACAC---AGACGCCGTAGCAGGC-----------------------------------------------AGCAACAGATGTACATACGTGGTGGCAGCCGTATCCGACTACATTATCACCC------------GAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droAna3
GTAGGACAA----AGCCAAAGTGCATCGCCT--ATACACAT----------AATAAGAATACCCCAAAATTTTCAGGTGAGCCACATAC---GAG--CCAAATACGA-ACTGGGTGGGTGGGAGA---AAACGTTAAATAAACAAAAGTCTCCAATTGCCA---------------------------------------CCTGATGT---------------TCA----------------------------------------TGTGACGTTAGCCAAGCCAGGAGTTAACAGTCAG---TCGATAAAAAG-ACACAGAAT---------------TCCATCTG----GCAATG----TACGACACGTAGGCAGAA--AG-------------CAGCACAAATTTGCAGTTAA-AGAGAGACAGTAACGC-----AATCCAGCCA------TCCAGT---CTGTATTATCTT------------CGC--CTCTGATAATCGCTCA--TTAATTTCTG---C--CCCTCAGTT-----CTTTACAGCAG----------------------C--------GCACACGA-AAGCAACAG------CAGCAAACA-------------------------------CC---------ATACACCAGCAGATGTCC-------------------------------GTGAACT------------GAATCCGAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----CTTTACAGCAG----------------------C--------GCACACGA-AAGCA............................................................................................................................................2811.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA-------------------------------CC---------ATACACCAGCAGATGTCC-------------------------------GT............................2711.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG----------------------C--------GCACACGA-AAGC.............................................................................................................................................1811.001001000
..............................................................................................G--CCAAATACGA-ACTGGGTGGGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGA-AAGCAACAG------CAGCAAA...........................................................................................................................2311.001000001
................................................................................................................................................................................................................................................................................................GTTAACAGTCAG---TCGATAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................................................................................................ATCTG----GCAATG----TACGACACGTAGGC.........................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGCCA------TCCAGT---CTGTAT...........................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGC-----AATCCAGCCA------TCCAGT---CT...............................................................................................................................................................................................................................................................................2111.001100000
droBip1
CCCACACACAT--AAC-A--AGG--------------------------------AA--TACCCC-AAATTTTCAGGTGAGCCACATA-------AACA-----CAA-ACTGGGTAGGTGGGAAAAAAAAATGTAAAATAAACAAA-TACTCAAGCTGCCA---------------------------------------CCTGATGT---------------TCA----------------------------------------TGTGACTTTATCCAAGCCAAGAGTTTACAGTCAG---CCGGATAATAG-ACACAGAAC---------------TCCGTCTG----GCAATG----TACGACACGTAAGCAGAA--AG-------------CAGCACAAATTTGCAGTTAA-AGAGAGACAGTAACGC-----AATCCAGCCA------TCCAGT---CTGTATTATCTT------------CGC--CTCTGATAATCGCTCT--TTAATTTTTG---C--CCCTCAGTT-----CTTCACAGCAG----------------------C--------GCACACGA-AAGC---AG------CAGCGAACA-------------------------------GC---------ATACACCAACAGATGTCC-------------------------------GTGAACT------------GAATCCGAATTSizeHit CountTotal NormTotal
No Reads
dp5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT------------GAAACCGAATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAAGAACGTCT--AGC-A--GTGCACCACA---AC-CCCACGCCACACAACAGAAAA--CA---A-TACTTTTCAGGTAAGTAGGCTG-----TAGTAG-----G---CACA------------------ACG---------------------------C---TGTTGAGCCCGGATTTCGACAGTATAGGCCCAGTCCCTTGGCATACGGATGCCTTATATCAA------------------------------------------TTT---------GACTTGGACTTTTCAATCAT---A------GTAA-ACACTGCCT----------------ATTTCTT----GGAATG-------GACACGTAGACAAAA-CAC-------------GGCAATCAATTTTCAGTT------GA----ATAGTTC-----------------------------TCGGTATTATCTGTA------------T--CTCTGATAATCTCTCTCCTTAACTGTTG-CAGCGCCCGCAGTT-----ATTTATCACAAGACGCCAACATCAGTCATCGGACACACGACGGCACACGG-A--------------CAGCAAACA-----G-AAACGGCTGCCAAGCCAATCGAAGGCTTAGCACATACATAGCT----ACATACATACGTGGACGCTG---TG-----TCTCT-TGACTATT------------GAAACCGAATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCCAACATCAGTCATCGGACA.................................................................................................................................................................2512.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACATCAGTCATCGGA...................................................................................................................................................................2012.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCAGTCATCGGACA.................................................................................................................................................................1812.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCT-TGACTATT------------GAAACC.....1811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACGTGGACGCTG---TG-----TCT..................................2311.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTGGACGCTG---TG-----TCTCT-TGACT..........................2611.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACATCAGTCATCGGAC..................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGGACACACGACGGCACAC....................................................................................................................................................2211.001100000
droWil2
TTACAACAGCAGGAGC-A--GAACAAAAAA---ACTCCCAC----------GCCTAA--GA---C-AAATTTTCAGGTAAGCTATAA-----GACGTCT-----TTG-----------------------------------------------GCTTATC---------------------------------------TTTAACAGAA-----AGTGAAATTGATTTAGCTTTGATTTTTCCATCACACT----TATATGT--------------------------------------------TAAAAAG-TCACACAATCGACATTAAAGATCCAGCACTTGGACAACAATG----T---ACACGTAGACAAAA-TAGAGCCTCAAAATAGT-ATTTAAATTTGCAGTTAA-AGAGAGA--GTGTTAT-----AG-----TCATAGTCATTGAAT-ACACATATTATCTATGT-----A-TATATTTCTCATCTAATCGCTCT--TTAACTTTTG-CAC--CTCACAGTTCAGTTATTTAGCCGAAGACGA---------------GACACACAT--TTACACAAAAAAC---AA------CACCGAGCATAGCGGAGCACTGATGACATGCCAAGATC-------------------------AAGCATATACGTGGACGAAG----------TCTGA-AAACAATT-----------TGAAACCGAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATAGCGGAGCACTGAT..........................................................................................................1912.00200110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATATACGTGGACGAAG----------TCTG.................................2311.00100010
TTACAACAGCAGGAGC-A--GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGGAGCACTGATGAC.......................................................................................................1811.00110000
............................................................................................................................................................................................................................................................................................................................................................................................TAGAGCCTCAAAATAGT-ATTT..............................................................................................................................................................................................................................................................................................................................................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATATACGTGGACGAAG----------T....................................2111.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCCAAGATC-------------------------AAGCAT.............................................................2011.00100100
.............................................................................................................................................................................................................................ATTGATTTAGCTTTGATTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAC---AA------CACCGAGCATAGCGGA..................................................................................................................2511.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATTTAGCCGAAGACGA---------------GACA.................................................................................................................................................................2411.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTAGCCGAAGACGA---------------GA...................................................................................................................................................................2011.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATTTAGCCGAAGACGA---------------GA...................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTGGACGAAG----------TCTG.................................1811.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGA-AAACAATT-----------TGAAACCGAAT.2311.00100010
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------GAAACCGAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------GAAACCGAATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------GAAACCGAATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:28 PM