ID:

dsi_28498

Coordinate:

2r:5075985-5076041 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-7.8

Flybase annnotation

five_prime_UTR [2r_5076025_5076144_-]; CDS [2r_5075107_5076024_-]; exon [2r_5074470_5076144_-]

No Repeatable elements found

Sense Strand Reads

############################################################################################################################################################# CCTAACATAACATATTTTCGACTATTTTCGGCTTTGTAAAACAAAATTTGGTAAAAAAAAGGTCAATATGTTGCGAATGTTGCGTCAGAAGTGTCGTTCCCTCGTAGATCGGAGCTTGCCGTGTCTGGAGTCTTTAGTGAATGCCTGTTCTCTATTC ************************************************....................((((((.....(((.((....)).)))....))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.......................ATTTTCGGCTTTGTAAAAC...................................................................................................................	19	0	1	1.00	1	1	0	0	0
................TTCGACTATTTTCGGCTTTGT........................................................................................................................	21	0	1	1.00	1	0	1	0	0
.........................................................AAAGGTCAATATGTTGCGAATGT.............................................................................	23	0	1	1.00	1	1	0	0	0
..............................................................................GTCGCGTCAGAAGTG................................................................	15	1	6	0.17	1	0	0	1	0
.......................CTATTCGGCTTTGTAAAAAA..................................................................................................................	20	3	20	0.15	3	0	0	3	0
..................................................................................................................CTTGCGGTGTCTGGA............................	15	1	7	0.14	1	0	0	1	0
..........................TTCGGCTTAGTAAAA....................................................................................................................	15	1	19	0.05	1	0	0	0	1

Anti-sense strand reads

GGATTGTATTGTATAAAAGCTGATAAAAGCCGAAACATTTTGTTTTAAACCATTTTTTTTCCAGTTATACAACGCTTACAACGCAGTCTTCACAGCAAGGGAGCATCTAGCCTCGAACGGCACAGACCTCAGAAATCACTTACGGACAAGAGATAAG ************************************************....................((((((.....(((.((....)).)))....))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs
....................................................TTTTTTTTCCTGTTATACAACCCTG................................................................................	25	3	1	2.00	2	0	2	0	0	0
.......................................................................................CTTCACCGCAAGGGAG......................................................	16	1	1	2.00	2	2	0	0	0	0
......................................................................................TCTTCACCGCAAGGGAG......................................................	17	1	1	1.00	1	1	0	0	0	0
......................................................................................................................GGCACAGACCTCAGAAATCAC..................	21	0	1	1.00	1	0	0	0	1	0
..................................................................................GCAGTCTTGACAGCAGGGG........................................................	19	2	1	1.00	1	0	0	1	0	0
.................................................................................................................CGAACGGCACAGACCTCAGAAATCACT.................	27	0	1	1.00	1	0	0	1	0	0
........................................................................................TTCACCGCAAGGGAG......................................................	15	1	3	0.33	1	1	0	0	0	0
......................................................................................ACTTCACCGCAAGGGAG......................................................	17	2	20	0.15	3	3	0	0	0	0
...........................................................................................ACCGCAAGGAAGCATATAG...............................................	19	3	9	0.11	1	0	1	0	0	0
........................................................................CGCTTGCAACACAGTCTTA..................................................................	19	3	11	0.09	1	0	0	0	0	1

Generated: 04/23/2015 at 09:23 AM