ID:

dsi_28478

 Coordinate:

2r:11005820-11005886 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.2 -8.9 -8.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2r:11004175-11004195 +
  2. dsi_28478  2r:11005866-11005886 -
star
  1. 2r:11004206-11004226 +
  2. dsi_28478  2r:11005835-11005855 -

Sense Strand Reads

GGCGAAGGCCTTCGAGCAGATGTCACACACGAAGGGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTGCTTCCGAAGGTCTGCTACTGAAGTTGACTTCATCTGCTATCCGGGACTGGACCTCAGCG
**************************************************......((((.(((((((.(((.(((.....)))))))))))))...)))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M025
embryo
 O001
Testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 O002
Head
 SRR1275487
Male larvae
................CAGATGTCACACACGAAGGGC.................................................................................................................................. 21 0 1 158.00 158 5 107 4 1 31 0 1 9 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGCA................................................................................................................................. 22 0 1 87.00 87 2 22 52 0 5 3 0 0 0 3 0 0 0 0 0
..........TTCGAGCAGATGTCACACACGA....................................................................................................................................... 22 0 1 84.00 84 0 3 12 48 1 14 2 0 0 1 1 2 0 0 0
........CCTTCGAGCAGATGTCACACA.......................................................................................................................................... 21 0 1 69.00 69 42 0 10 10 0 2 5 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACACACG........................................................................................................................................ 21 0 1 62.00 62 12 16 10 5 14 1 2 1 0 0 0 0 1 0 0
.........CTTCGAGCAGATGTCACACACG........................................................................................................................................ 22 0 1 31.00 31 5 8 2 8 4 0 4 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACAC........................................................................................................................................... 20 0 1 25.00 25 19 2 2 0 1 0 1 0 0 0 0 0 0 0 0
.........CTTCGAGCAGATGTCACACAC......................................................................................................................................... 21 0 1 12.00 12 8 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...........TCGAGCAGATGTCACACACGA....................................................................................................................................... 21 0 1 12.00 12 0 0 0 9 0 2 0 0 0 0 1 0 0 0 0
................CAGATGTCACACACGAAGGG................................................................................................................................... 20 0 1 11.00 11 6 0 2 1 0 2 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACAA......................................................................................................................................... 22 1 1 10.00 10 9 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGC.................................................................................................................................. 20 0 1 6.00 6 0 5 0 0 0 0 1 0 0 0 0 0 0 0 0
..........TTCGAGCGGATGTCACACACG........................................................................................................................................ 21 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GATGTCACACACGAAGGGCA................................................................................................................................. 20 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............GCAGATGTCACACACGAAGGGC.................................................................................................................................. 22 0 1 5.00 5 0 4 0 0 1 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACACAC......................................................................................................................................... 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGCAC................................................................................................................................ 22 0 1 4.00 4 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........GCTTCGAGCAGATGTCACACACG........................................................................................................................................ 23 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGCAGATGTCACACACGAAGG.................................................................................................................................... 21 0 1 4.00 4 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
....AAGGCCTTCGAGCAGATGTCA.............................................................................................................................................. 21 0 1 4.00 4 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.........CTTCGAGCGGATGTCACACAC......................................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACACAA......................................................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACCTTCGAGCAGATGTCACACAA......................................................................................................................................... 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGCTT................................................................................................................................ 23 2 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......ACCTTCGAGCAGATGTCACACA.......................................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGAC.................................................................................................................................. 21 1 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGCAA................................................................................................................................ 23 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGCGGATGTCACACA.......................................................................................................................................... 21 1 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................CGGATGTCACACACGAAGGGC.................................................................................................................................. 21 1 1 3.00 3 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0
.........CTTCGAGCAGATGTCACACA.......................................................................................................................................... 20 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................CAGATTTCACACACGAAGGGC.................................................................................................................................. 21 1 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTGACTTCATCTGCTATCCGGGA............. 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGCT................................................................................................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CTTCGAGCAGATGTCACAAAC......................................................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAGCAGATGTCACACACGAAGG.................................................................................................................................... 22 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
..............AGCAGATGTCACACACGAAGGGC.................................................................................................................................. 23 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.........CTTCGAGCAGATGTCACACT.......................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCCGAAGGTCTGCTACTGAAGTT.................................. 23 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACAAAA....................................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGCTTT............................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGCTT................................................................................................................................ 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GGCCTTCGAGCAGATGTCACAC........................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGCAT................................................................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATTCCACACACGAAGGGC.................................................................................................................................. 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACA............................................................................................................................................ 17 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACAC......................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCAGATGTCACACACGAAGGG................................................................................................................................... 21 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGACTTCATCTGCTATCCGGG.............. 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCATCTGCTATCCGGGACTG.......... 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AAGGCCTTCGAGCAGATGT................................................................................................................................................ 19 0 2 1.50 3 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0
............................................................................CCTCTGGTCGATGGAAC.......................................................................... 17 2 12 1.08 13 0 0 0 2 0 1 0 0 0 0 9 1 0 0 0
................CAGATGTCACACGCGAAGGGC.................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGCCACACA.......................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAGGTGGTCTTGTTGTGGTT................................................................................................ 21 0 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGT.................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCGGATGTCACACACGT....................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCCGAAGGTCTGCTACTGAAG.................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........TCGAGCAGATGTCACACACGAAGGGC.................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGAA................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AGGCCTGCTACTGAAGTTGAC............................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGAAGGCCTGCTACTGAAGTT.................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGCAT................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAGCAGATGTCACACACGA....................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACA............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACTAAGGGCA................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCATCTGCTATCCGGGACTGG......... 21 0 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................CAGATGTCACACACGAAGGTTCCA............................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGCAA................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCGAGCAGATGTCACACACG........................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........TCGAGCAGATGTCACACA.......................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCGGATGTCGCACACG........................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CTTGTTGTGGTTGTGCACC......................................................................................... 19 0 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..........TTCGAGCAGATGTCACACACGAAAAA................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TGCGAGCAGATGTCACACACGA....................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............AGCAGATGTCACACACGAAGGGTT................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ATGTCACACACGAAGGGC.................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............CGAGCAGATGTCACACACGAAGGGC.................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACTTA........................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GATGTCACACACGAAGGGCACAGCTTG.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................AGACGTCACACACGAAGGGCAC................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........CTTCGAGCAGATGTCACACACGTAT..................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CTTCGAGCGGATGTCACACACG........................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGGATGTCACACACGAAGGGCT................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............AGCAGATGTCACACACGA....................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CGAAGGCCTTCGAGCAGATGT................................................................................................................................................ 21 0 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........TCGAGCAGATGTCACACGCGA....................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AGGTGGTCTTGTTGTGGTTGT.............................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGG.................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........TTCGAGCAGATGTCACACACAA....................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACAAA........................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGGCCTTCGAGCAGATGTCAC............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAG..................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....AAGGCCTTCGAGCAGATGTCAT............................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AGGTCTGCTACTGAAGTTGA................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....AAGGCCTTCGAGCGGATGTCAT............................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGAAGATGTCACACA.......................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACAT......................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TAGATGTCACACACGAAGGGCA................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACG.......................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................GTGCACCTCTTGTCGATGCAACG......................................................................... 23 0 2 1.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0
................................................................................................................CGAAGGCCTGCTACTGAAGTTGACTTCA........................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGAAGATGTCACACACG........................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGCA.................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTGGTCTTGTTGTGGTTGTG............................................................................................. 20 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CTTCGAGCATATGTCACACAC......................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGCTTCCGAAGGTCTGCTACTGAAGTT.................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....AAGGCCTTCGGGCAGATGTCA.............................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGGGCATT............................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGCAGATGTCACACACGAAGGG................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........CTTCGAGCAGATGTCACACACA........................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGCTATCCGGGACTGGACCTC.... 21 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
...............ACAGATGTCACACACGAAGGGC.................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCCGAAGGCCTGCTACTGAAG.................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CACTCGTAGGTGGTCTTGTTGAT................................................................................................... 23 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TCTGCTACTGAAGTTGACTTC............................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............GAGCAGATGTCACACA.......................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGCAGATGTCACACT.......................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTTCGAGCAGATGTCACACACG........................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACACACGT....................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGATGTCACACACGAAGTA................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGATGTCACACACGAAGGGCA................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........CCTTCGAGCGGATGTCACACAA......................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACACACGAA...................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................CAGATGCCACACACGAAGGGC.................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTAACACACGA....................................................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....AAGGCCTTCGAGCAGATG................................................................................................................................................. 18 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................TAGGTGGTCTTGTTGTGGTTGT.............................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTCGATGCAACGTCTGATCC................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CGATGCAACGTCTGATCCCGCT............................................................. 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGCTCTCCGGGACTGGACCTC.... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................TCTGCTATCCGGGACTGGACC...... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................ACAGCTTGCACTCGTAGGTG.............................................................................................................. 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................TGGTCTTGTTGTGGTTGTGCAT.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCAACGTCTGATCCCGCTTG........................................................... 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCATCTGCTATCCGGGAC............ 19 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CGATGCAACGTCTGATCCCGC.............................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGGTCTTGTTGTGGTTGT.............................................................................................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATCCGGGACTGGACCTCAGC. 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTCGATGCAACGTCTGA.................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........CTCGAGCAGATGTCACACA.......................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAGCAGATGTCACACACGAAGGAA.................................................................................................................................. 24 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........CCTTCGAGAAGATGTCACAA........................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGTTGTGCACCTCTTGTCGA................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATCTGCTATCCGGGACTG.......... 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAGGTGGTCTTGTTGTGGT................................................................................................. 20 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................TCTGCTATCCGGGACTGGTT....... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGGTCTTGTTGTGGTTGTGCA........................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TCGATGCAACGTCTGATCCCG............................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................CTCGTAGGTGGTCTTGTTGTG................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................GTGCACCTCTTGTCG................................................................................. 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGAGCAGATGTCACAAAT......................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCTGCTATCCGGGACTGGAAT...... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTGGGCTTGTTGTGGTTGTG............................................................................................. 21 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTGGTCTTGTTGTGGTTGTGTTT.......................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CTCTTGTCGATGGAAC.......................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................CACAGCTTGCACTCGTAGGAT.............................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GGGTCTGTACCTCAG.. 15 2 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0
...................CAGTCACACACGAAGGGC.................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................GCTTGCACGCGTGGGT............................................................................................................... 16 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGTTGGTGATCTAGTTGTGG.................................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
GTCGACGGCCTTTGAGCAGA................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................TGGTCTCGTAGGTGGTCTTTT....................................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGCTATCCGGGACTGAACT...... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................CGCGCTAGCTTGCGAAGGT................................................ 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GGGTCTGTACCTCAGC. 16 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................AACGTTTGATCCCCCT............................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGCTTCCGGAAGCTCGTCTACAGTGTGTGCTTCCCGTGTCGAACGTGAGCATCCACCAGAACAACACCAACACGTGGAGAACAGCTACGTTGCAGACTAGGGCGAACGAAGGCTTCCAGACGATGACTTCAACTGAAGTAGACGATAGGCCCTGACCTGGAGTCGC
*****************************************************************......((((.(((((((.(((.(((.....)))))))))))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 O001
Testis
 M053
female body
...............................................................................................GACTAGGGCGAACGAAGGCTT................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTGAAGTAGACGATAGGCCCT............. 21 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0 0
........................TGTGTGCTTCCCGTGTCGAAC.......................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................CTTCCGGACGATGACTTCAAC................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............GCTCGTCTACAGTGTGTGCTT...................................................................................................................................... 21 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0
..............TCGTCTGCAGTGTGTGCTTCC.................................................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................GGACGATGACTTCAACTGAAG............................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................GAACGAAGGCTTCCAGACGAT.......................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................ACTGAAGTAGACGATAGGCC............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..TTTTTCGGAAGCTCGTCTACAG............................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTTCCGGACGATGACTTCAACT................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GAACGAAGGCTTCCGGACGAT.......................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................TGCTTCCCGTGTCGAACGTGA...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........AGCTCGTCTACAGTGTGTGC........................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.............CTCGTCTACAGTGTGTGCTTC..................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................CTACAGTGTGTGCTTCCCGTG................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGCAGACTAGGGCGAACGAAG....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ACGAAGGCTTCCAGACGATG......................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......CCGGAAGCTCGTCTACAGTG............................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................AACTAGGGCGAACGAAGGCTT................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................TCCCGTGTCGAACGTGAGCAT.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TTCCGGACGATGACTTCAAC................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............TCGTCTACAGTGTGTGCTTC..................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TTCCGGACGATGACTTCAACTG............................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........GGAAGCTCGTCTACAGTGTGT.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................GAAGTAGACGATAGGCCCTGA........... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATGACTAGGGCGAACGAAGGCTT................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TTGTGTGCTTCCCGTGTCGAAC.......................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTACTGAAGTAGACGATAGGC................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......CAGGAAGCTCGTCTACAGTGT............................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......CGGAAGCTCGTCTACAGTG............................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................GAACAACACCAACACGT........................................................................................... 17 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TACGTTGCAGACTAGGGCGA............................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................GGAGAACAGCTACGTTGCA........................................................................ 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................ACGTTGCAGACTAGGGCGAAC........................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAGACGAGAGGCCCTGACCTG....... 21 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
....TTCCGGAAGCTCGTCTACA................................................................................................................................................ 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............TCGGCTACAGTGTGCGTTTC..................................................................................................................................... 20 3 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................GGAGAACAGCTACGTTGCAGA...................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................GTTGCAGACTAGGGCGAACGA......................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TACGTTGCAGACTAGGGCGAA............................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TACGTTGCAGACTAGGGCGAAC........................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................GGAGAACAGCTACGTTGCAGACT.................................................................... 23 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................CGTGGAGAACAGCTACGTTGC......................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
......................................................CACCAGAACAACACCAACACGT........................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
............................................CGTGAGCATCCACCAGAACAA...................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................CCAACACGTGGAGAACAGCTA............................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................AGAACAGCTACGTTGCAGACT.................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................GGAGAACAGCTACGTTGCAGACTA................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................GATTCCAGATGATGACT...................................... 17 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11005770-11005936 - dsi_28478 GGCGAAGGCCTTCGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------CACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTGCTTCCGAAGGTCTGCTACTGAAGTTGA---CTTCATCTGCTATCCGGGACTGGACCTCAGCG
droSec2 scaffold_1:7817810-7817976 - GGCGAAGGCCTTCGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------CACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTTCTCCCGAAGGTCTGCTACTGAAGTTGA---CTTCATCTGCTATCCGGGACTGGACCTCACCG
dm3 chr2R:10298607-10298793 + GGCGAAGGCCTTCGAGCAAATGTTACACACGAAAGGCCGCACATCGTTGTGCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTGCTTCTGAAGGTCTGC-----------------------------------------------
droEre2 scaffold_4845:15546326-15546512 - GGCGAAGGCTTTCGAGCAGATGTTACACACGAAGGGCCGCACATCGTTGTGCACCTTCATGTGCCGATCCAGGTTTCCCGAATTGCAGAAGCTCTTCGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGTCGATGCAACGTCTGATCCCGCTTGCTCTTGAAGGTCTGC-----------------------------------------------
droYak3 2R:10231624-10231810 + GGCAAAGGCTTTCGAGCAGATATTACACACGAAGGGCCGCACATCGTTGTGCACCTTCATGTGGCGATCCAGGTTCCCAGAATTGCAGAAGCTCTTCGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGTCGATGTAACGTCTGATCCCGCTTGCTCTTGAAGGTCTGC-----------------------------------------------
droEug1 scf7180000409462:2546106-2546299 - GGCAAAGGCCTTCGAGCAGATGTTGCACACAAAGGGTCGTACATCGTTGTGCACCTTCATGTGGCGGTCGAGGTTCCCCGAGTTGCAGAAGCTCTTGGCGCACAGCTTGCACTCGTATGTGGTCTTGTTGTGGTTATGCACCTCCTGCCGGTGCAGTGTCTGGTCCCGCTTACTCTTGAAGGTCTGCATCAGAA----------------------------------------
droBia1 scf7180000301754:2356408-2356629 - GGCGAAGGCCTTCGAGCAGATGTTGCACACAAAGGGCCGCACATCGTTGTGCACCTTCATGTGGCGGTCCAGGTTGCCCGAGTTGCAGAAGCTCTTGGCGCACAACTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTGCGAATGAGGATAATGGTTAGATCTGGTTTCTAGGAC------------
droTak1 scf7180000415272:145359-145544 + GGCGAAGGCCTTCGAGCAGATGTTGCACACGAAGGGCCGCACATCGTTGTGCACCTTCATGTGGCGATCGAGGTTGCCCGAGTTGCAGAAGCTCTTGGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTG------------------------------------------------
droEle1 scf7180000491349:566058-566251 - GGCGAAGGCCTTCGAGCAAATGTTGCACACGAAGGGCCGGACATCGTTGTGCACCTTCATGTGGCGATCGAGATTGCCCGAGTTGCAGAAGCTCTTCGCGCACAACTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCTGTGCAGCGTTTGGTCCCGCTTGCTCTTGAAAGTCTGTCACCCAA----------------------------------------
droRho1 scf7180000779318:120458-120652 + GGCGAAGGCTTTAGAGCAGATGTTGCACACGAAGGGTCGAACATCGTTGTGGACCTTCATGTGACGATCAAGATTCCCCGAGTTGCAGAAACTCTTGGCGCACAACTTACACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCTGTGCAGCGTTTGGTCCCGCTTACTTTTAAAAGTCTATTACCAAAG---------------------------------------
droFic1 scf7180000453215:851123-851316 + GGCGAAGGCCTTCGAGCAGATGGTACACACAAAGGGCCTCACATCGTTGTGCACCTTCATGTGGCGGTCGAGGTTCCCCGAGTTGCAGAAGCTCTTGGCGCACAATTTGCATTCGTAGGTTGTCTTGTTATGGTTGTGCACCTCTTGCCGATGGAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTGCAGCCAAA----------------------------------------
droKik1 scf7180000302411:183555-183754 - GGCAAAGGCCTTAGAACAGATATTACACACAAAGGGCCGGACATCATTGTGCACCTTCATGTGCCGATCGAGGTTGCCCGAGTTGCAGAAGCTCTTGGCGCACAGCTTGCACTCGTAAGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCGATGCAGCGTCTGGTCCCGCTTACTCTTGAAGGTCTGCAAGGGAGGATTA---C-------------------------------
droAna3 scaffold_13266:14640320-14640506 + GGCAAAGGCCTTCGAGCAAATGTTGCACACAAAAGGACGCACATCGTTGTGCACCTTCATGTGGCGATCGAGATTTCCTGAGTTGCAGAAGCTCTTGGCACAAAGCTTGCACTCGTAGGTAGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAACGTCTGGTCCCGCTTGCTCTTGAAGGTCTGC-----------------------------------------------
droBip1 scf7180000396428:185251-185436 - GGCAAAGGCCTTCGAGCAAATGTTGCATACAAATGGACGCACATCGTTGTGCACCTTCATGTGGCGATCGAGATTTCCTGAGTTGCAGAAGCTCTTGGCACACAGCTTGCACTCATAGGTAGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTG------------------------------------------------
dp5 3:4385304-4385489 - GGCAAACGCCTTCGAGCATATGTTGCAGACAAACGGCCGCACGTCGTTGTGCACCTTCATATGGCGATCCAGGTTGCCCGAGTTGCAAAAACTCTTTGCACAAAGCTTGCATTCATAGGTAGTTTTGTTGTGATTATGAACCTCCTGGCGGTGAAGGGTCTGGTCGCGTTTGCTCTTGAACGTCTG------------------------------------------------
droPer2 scaffold_2:4572029-4572214 - GGCGAACGCCTTCGAGCATATGTTGCAGACAAACGGCCGCACGTCGTTGTGCACCTTCATATGGCGATCCAGGTTGCCCGAGTTGCAAAAACTCTTTGCACAAAGCTTGCATTCATAGGTAGTTTTGTTGTGATTATGAACCTCCTGGCGGTGAAGGGTCTGGTCGCGTTTGCTCTTGAACGTCTG------------------------------------------------
droWil2 scf2_1100000004513:3545924-3546110 - GGCAAAGGCCTTCGAGCATATATTGCACACGAATGGACGCACATCGTTGTGGACCTTCATGTGACGATCCAAATTGCCCGAATTGCAAAAACTTTTCGAGCACAATTTGCATTCATATGTCGTTTTATTGTGATTGTGCGCTTCCTGACGATGCAGCGTCTGGTCGCGTTTGGTCTTGAAGGTCTGC-----------------------------------------------
droVir3 scaffold_12875:13608028-13608214 + TGCAAAGGCCTTGGAGCAGATGTTGCACACAAACGGCCGCACATCGTTGTGCACCTTCATGTGCCGATCCAGATTGCCACTGTTGCAAAAACTCTTGGCGCACAATTTGCACTCATAGGTAGTTTTGTTATGGTTGTGCACCTCCTGTCGATGGAGCGTCTGATCGCGTTTACTTGTAAACATCTGC-----------------------------------------------
droMoj3 scaffold_6496:9028064-9028250 + TGCAAACGCCTTCGAGCATATGTTACATACAAAGGGACGCACATCGTTATGGACCTTCATGTGGCGATCCAGATTGCCGCTGTTGCAGAAATTTTTGGCGCACAGTTTGCATTCGTAGGTAGTTTTGTTATGATTGTGCACCTCCTGGCGATGGAGCGTTTGATCGCGTTTACTTTTAAACGTCTGC-----------------------------------------------
droGri2 scaffold_15245:17621901-17622093 - TGCGAACGCCTTGGAGCATATGTTGCACACAAACGGCCGCACATCGTTGTGCACCTTCATGTGGCGGTCGAGGTTGCCACTGTTGCAGAAACTCTTGGCGCACAGTTTGCACTCATAGGTAGTTTTGTTGTGGTTGTGCACCTCTTGCCGATGCAGTGTCTGATCGCGTTTGCTCTTAAACGTCTGCAATTGA-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCGAAGGCCTTCGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------CACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTGCTTCCGAAGGTCTGCTACTGAAGTTGA---CTTCATCTGCTATCCGGGACTGGACCTCAGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................CAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................211158.0015810731910001004005000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CA....................................................................................................................................22187.00872250000300052302000
..........TTCGAGCAGATGTCACACACGA..........................................................................................................................................................................................................22184.008431020014481212100000
........CCTTCGAGCAGATGTCACACA.............................................................................................................................................................................................................21169.006900050021000100042000
..........TTCGAGCAGATGTCACACACG...........................................................................................................................................................................................................21162.0062161412001500100112000
.........CTTCGAGCAGATGTCACACACG...........................................................................................................................................................................................................22131.003184040008002005000
........CCTTCGAGCAGATGTCACAC..............................................................................................................................................................................................................20125.0025210100000020019000
.........CTTCGAGCAGATGTCACACAC............................................................................................................................................................................................................21112.001221000000001008000
...........TCGAGCAGATGTCACACACGA..........................................................................................................................................................................................................21112.001200000029100000000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................20111.001100000021002006000
........CCTTCGAGCAGATGTCACACAA............................................................................................................................................................................................................22110.001000000001000009000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2016.00650010000000000000
..................GATGTCACACACGAAGGG----------------------------------------------------------------CA....................................................................................................................................2015.00500000000001004000
...............GCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2215.00541000000000000000
..........TTCGAGCAGATGTCACACAC............................................................................................................................................................................................................2015.00500000000000005000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CAC...................................................................................................................................2214.00400000000000013000
..............AGCAGATGTCACACACGAAGG.......................................................................................................................................................................................................2114.00402000000000002000
....AAGGCCTTCGAGCAGATGTCA.................................................................................................................................................................................................................2114.00400000010001002000
..........TTCGAGCAGATGTCACACAA............................................................................................................................................................................................................2014.00400000000000004000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CTT...................................................................................................................................2313.00311000000000001000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CAA...................................................................................................................................2313.00300000000003000000
.........CTTCGAGCAGATGTCACACA.............................................................................................................................................................................................................2013.00300010000000002000
...................................................................................................................................................................................................TTGA---CTTCATCTGCTATCCGGGA.............2312.00200000002000000000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CT....................................................................................................................................2212.00220000000000000000
.............GAGCAGATGTCACACACGAAGG.......................................................................................................................................................................................................2212.00200000011000000000
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2312.00202000000000000000
.........CTTCGAGCAGATGTCACACT.............................................................................................................................................................................................................2012.00200000000000002000
..............................................................................................................................................................................TCCGAAGGTCTGCTACTGAAGTT.....................................2312.00210100000000000000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CTTT..................................................................................................................................2312.00200000000000002000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CTT...................................................................................................................................2212.00200000000000002000
......GGCCTTCGAGCAGATGTCACAC..............................................................................................................................................................................................................2212.00200200000000000000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CAT...................................................................................................................................2312.00200000000000002000
..........TTCGAGCAGATGTCACA...............................................................................................................................................................................................................1712.00200000000001001000
........CCTTCGAGCAGATGTCACACAC............................................................................................................................................................................................................2212.00200000000000002000
...............GCAGATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................2112.00200000011000000000
....................................................................................................................................................................................................TGA---CTTCATCTGCTATCCGGG..............2112.00200000010000001000
...........................................................................................................................................................................................................TTCATCTGCTATCCGGGACTG..........2121.50300000000000003000
....AAGGCCTTCGAGCAGATGT...................................................................................................................................................................................................................1921.50300002100000000000
..................................................................................................................GTAGGTGGTCTTGTTGTGGTT...................................................................................................2121.00200002000000000000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------T.....................................................................................................................................2111.00100000000000001000
.............................................................................................................................................................................TTCCGAAGGTCTGCTACTGAAG.......................................2211.00101000000000000000
...........TCGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2611.00100100000000000000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CAT...................................................................................................................................2211.00100000000000001000
.............GAGCAGATGTCACACACGA..........................................................................................................................................................................................................1911.00100000010000000000
........CCTTCGAGCAGATGTCACA...............................................................................................................................................................................................................1911.00100000000000001000
............................................................................................................................................................................................................TCATCTGCTATCCGGGACTGG.........2121.00200000000010001000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CAA...................................................................................................................................2211.00100000000000001000
...........TCGAGCAGATGTCACACA.............................................................................................................................................................................................................1811.00100000000001000000
...........................................................................................................................CTTGTTGTGGTTGTGCACC............................................................................................1921.00200002000000000000
..........TTCGAGCAGATGTCACACACGAAAAA----------------------------------------------------------------......................................................................................................................................2611.00100000000000001000
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------TT....................................................................................................................................2411.00100000000000001000
...................ATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................1811.00100100000000000000
............CGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2511.00100100000000000000
........CCTTCGAGCAGATGTCACACTTA...........................................................................................................................................................................................................2311.00100000000000001000
..................GATGTCACACACGAAGGG----------------------------------------------------------------CACAGCTTG.............................................................................................................................2711.00101000000000000000
..............AGCAGATGTCACACACGA..........................................................................................................................................................................................................1811.00100000010000000000
..CGAAGGCCTTCGAGCAGATGT...................................................................................................................................................................................................................2121.00200000000000011000
....................................................................................................................AGGTGGTCTTGTTGTGGTTGT.................................................................................................2121.00200000000000002000
................CAGATGTCACACACGAAGG.......................................................................................................................................................................................................1911.00100000000000000100
........CCTTCGAGCAGATGTCACACAAA...........................................................................................................................................................................................................2311.00100000000000001000
.....AGGCCTTCGAGCAGATGTCAC................................................................................................................................................................................................................2111.00100000000000001000
................CAGATGTCACACACGAAG........................................................................................................................................................................................................1811.00100000000001000000
....AAGGCCTTCGAGCAGATGTCAT................................................................................................................................................................................................................2211.00100000000000001000
...................................................................................................................................................................................AGGTCTGCTACTGAAGTTGA---................................2011.00100010000000000000
........CCTTCGAGCAGATGTCACACAT............................................................................................................................................................................................................2211.00100000000000001000
........CCTTCGAGCAGATGTCACACG.............................................................................................................................................................................................................2111.00100010000000000000
.......................................................................................................................................GTGCACCTCTTGTCGATGCAACG............................................................................2321.00200001100000000000
................CAGATGTCACACACGAAGGC----------------------------------------------------------------A.....................................................................................................................................2111.00100000000001000000
......................................................................................................................GTGGTCTTGTTGTGGTTGTG................................................................................................2021.00200000000000002000
.........................................................................................................................................................................TTGCTTCCGAAGGTCTGCTACTGAAGTT.....................................2811.00101000000000000000
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CATT..................................................................................................................................2411.00100000000000001000
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................2211.00100000010000000000
.........CTTCGAGCAGATGTCACACACA...........................................................................................................................................................................................................2211.00100000000000001000
.................................................................................................................................................................................................................TGCTATCCGGGACTGGACCTC....2121.00200000000200000000
.............................................................................................................CACTCGTAGGTGGTCTTGTTGAT......................................................................................................2321.00200000000000002000
......................................................................................................................................................................................TCTGCTACTGAAGTTGA---CTTC............................2111.00100000000010000000
.............GAGCAGATGTCACACA.............................................................................................................................................................................................................1611.00100000000001000000
........CCTTCGAGCAGATGTCACACT.............................................................................................................................................................................................................2111.00100000000000001000
..........TTCGAGCAGATGTCACACACGT..........................................................................................................................................................................................................2211.00100000000000001000
................CAGATGTCACACACGAAGTA----------------------------------------------------------------......................................................................................................................................2011.00100000000000001000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CA....................................................................................................................................2111.00100000000001000000
..........TTCGAGCAGATGTCACACACGAA.........................................................................................................................................................................................................2311.00100000001000000000
....AAGGCCTTCGAGCAGATG....................................................................................................................................................................................................................1820.50100001000000000000
...................................................................................................................TAGGTGGTCTTGTTGTGGTTGT.................................................................................................2220.50100000000000001000
.................................................................................................................................................TGTCGATGCAACGTCTGATCC....................................................................2120.50100001000000000000
....................................................................................................................................................CGATGCAACGTCTGATCCCGCT................................................................2220.50101000000000000000
...............................................................................................................................................................................................................TCTGCTATCCGGGACTGGACC......2120.50100000100000000000
.....................................................................................................ACAGCTTGCACTCGTAGGTG.................................................................................................................2020.50100000000000100000
.......................................................................................................................TGGTCTTGTTGTGGTTGTGCAT.............................................................................................2220.50100000000000001000
........................................................................................................................................................GCAACGTCTGATCCCGCTTG..............................................................2020.50101000000000000000
...........................................................................................................................................................................................................TTCATCTGCTATCCGGGAC............1920.50100001000000000000
....................................................................................................................................................CGATGCAACGTCTGATCCCGC.................................................................2120.50100000000000001000
.......................................................................................................................TGGTCTTGTTGTGGTTGT.................................................................................................1820.50100000000000001000
.....................................................................................................................................................................................................................ATCCGGGACTGGACCTCAGC.2020.50100000001000000000
.................................................................................................................................................TGTCGATGCAACGTCTGA.......................................................................1820.50100001000000000000
.............GAGCAGATGTCACACACGAAGGA----------------------------------------------------------------A.....................................................................................................................................2420.50100000010000000000
..................................................................................................................................TGGTTGTGCACCTCTTGTCGA...................................................................................2120.50100000000000001000
..............................................................................................................................................................................................................ATCTGCTATCCGGGACTG..........1820.50100010000000000000
..................................................................................................................GTAGGTGGTCTTGTTGTGGT....................................................................................................2020.50100001000000000000
...............................................................................................................................................................................................................TCTGCTATCCGGGACTGGTT.......2020.50100000000000001000
.......................................................................................................................TGGTCTTGTTGTGGTTGTGCA..............................................................................................2120.50100000000000001000
...................................................................................................................................................TCGATGCAACGTCTGATCCCG..................................................................2120.50100000010000000000
...............................................................................................................CTCGTAGGTGGTCTTGTTGTG......................................................................................................2120.50100000010000000000
.......................................................................................................................................GTGCACCTCTTGTCG....................................................................................1520.50100000000001000000
...............................................................................................................................................................................................................TCTGCTATCCGGGACTGGAAT......2130.33100000000000001000
......................................................................................................................GTGGTCTTGTTGTGGTTGTGTTT.............................................................................................2330.33100000000000001000
....................................................................................................CACAGCTTGCACTCGTAGGAT.................................................................................................................2140.25100000000000001000
droSec2
GGCGAAGGCCTTCGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------CACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTTCTCCCGAAGGTCTGCTACTGAAGTTGA---CTTCATCTGCTATCCGGGACTGGACCTCACCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........CCTTCGAGCAGATGTCACACA.............................................................................................................................................................................................................21231.50632022021
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CAT...................................................................................................................................2218.0080512
.........CTTCGAGCAGATGTCACACACG...........................................................................................................................................................................................................2227.00145603
..........TTCGAGCAGATGTCACACACG...........................................................................................................................................................................................................2126.00125304
........CCTTCGAGCAGATGTCACAC..............................................................................................................................................................................................................2025.00105203
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CAT...................................................................................................................................2314.0040301
................CAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2123.5070412
........CCTTCGAGCAGATGTCACACAC............................................................................................................................................................................................................2223.0061401
..................GATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................1923.0060033
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CA....................................................................................................................................2213.0030102
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2322.5050221
........CCTTCGAGCAGATGTCACACAT............................................................................................................................................................................................................2222.0040202
.................AGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2021.5031011
................CAGATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................2021.5030102
......................TCACACACGAAGGG----------------------------------------------------------------CACAGCT...............................................................................................................................2111.0010001
....................TGTCACACACGAAGGG----------------------------------------------------------------CACAG.................................................................................................................................2111.0011000
........................ACACACGAAGGG----------------------------------------------------------------CACAGCTTGCACTC........................................................................................................................2611.0010010
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CAC...................................................................................................................................2211.0011000
...........TCGAGCAGATGTCACACACGA..........................................................................................................................................................................................................2121.0020200
...................................................................................................................................................................................................TTGA---CTTCATCTGCTATCCGG...............2111.0010001
..............AGCAGATGTCACACACGAAGG.......................................................................................................................................................................................................2121.0021100
..........................................................................................................................TCTTGTTGTGGTTGTGCACCT...........................................................................................2121.0020200
.............GAGCAGATGTCACACACGAAGGG----------------------------------------------------------------CAC...................................................................................................................................2611.0010100
........CCTTCGAGCAGATGTCACACAA............................................................................................................................................................................................................2221.0020200
.......................CACACACGAAGGG----------------------------------------------------------------CACAGT................................................................................................................................1911.0010100
............CGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------CAC...................................................................................................................................2711.0010010
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------CAC...................................................................................................................................2511.0010001
....................................................................................................................................................................................................TGA---CTTCATCTGCTATCCGGG..............2111.0011000
.................AGATGTCACACACGAAGGG----------------------------------------------------------------CA....................................................................................................................................2111.0011000
.....................GTCACACACGAAGGG----------------------------------------------------------------CACAG.................................................................................................................................2011.0010010
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------ATT...................................................................................................................................2520.5010100
....AAGGCCTTCGAGCAGATGTCA.................................................................................................................................................................................................................2120.5010100
................CAGATGTCACACACGAAGGG----------------------------------------------------------------CT....................................................................................................................................2220.5010001
.........CTTCGAGCAGATGTCACACACGT..........................................................................................................................................................................................................2320.5010100
..........TTCGAGCAGATGTCACACACGTT.........................................................................................................................................................................................................2320.5010100
..............................................................................................................................................................................CCCGAAGGTCTGCTACTGAAG.......................................2120.5010010
.............GAGCAGATGTCACACACGAAG........................................................................................................................................................................................................2120.5010001
.................................................................................................................................................................................GAAGGTCTGCTACTGAAGTTG....................................2120.5010100
..........TTCGAGCAGATGTCACACACGT..........................................................................................................................................................................................................2220.5010100
....................................................................................................................................GTTGTGCACCTCTTGTCGAT..................................................................................2020.5010100
......................................................................................................................................................................................TCTGCTACTGAAGTTGA---CTT.............................2020.5010010
.........CTTCGAGCAGATGTCACACA.............................................................................................................................................................................................................2020.5011000
..................GATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................1820.5010010
........CCTTCGAGCAGATGTCATT...............................................................................................................................................................................................................1920.5010001
................CAGATGTCACACACGAAGG.......................................................................................................................................................................................................1920.5010001
..........TTCGAGCAGATGTCACACA.............................................................................................................................................................................................................1920.5010001
.......GCCTTCGAGCAGATGTCACA...............................................................................................................................................................................................................2020.5011000
..CGAAGGCCTTCGAGCAGATGTCACACAC............................................................................................................................................................................................................2820.5010100
......................................................................................................................GTGGTCTTGTTGTGGTTGTGC...............................................................................................2120.5010001
.................AGATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................1920.5010010
.................AGATGTCACACACGAAGGG----------------------------------------------------------------T.....................................................................................................................................2020.5010100
.............................................................................................................................TGTTGTGGTTGTGCACCTCTTGT......................................................................................2320.5010010
.GCGAAGGCCTTCGAGCAGATG....................................................................................................................................................................................................................2120.5011000
...........................................................................................................................................................................................TACTGAAGTTGA---CTTCATCTGCT.....................2320.5010010
................CAGATGTCACACACGAAGT.......................................................................................................................................................................................................1920.5010001
.............GAGCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2420.5010001
.......GCCTTCGAGCAGATGTCACAC..............................................................................................................................................................................................................2120.5011000
..............AGCAGATGTCACACACGAAGGG----------------------------------------------------------------......................................................................................................................................2220.5010001
..........TTCGAGCAGATGTCACACACGA..........................................................................................................................................................................................................2220.5010001
............CGAGCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2520.5010001
.................AGATGTCACACACGAAGGG----------------------------------------------------------------A.....................................................................................................................................2020.5011000
................................................................................................................................................TTGTCGATGCAACGTCTGAT......................................................................2020.5010010
.........CTTCGAGCAGATGTCACACAC............................................................................................................................................................................................................2120.5011000
...............GCAGATGTCACACACGAAGGG----------------------------------------------------------------C.....................................................................................................................................2220.5010010
...................................G----------------------------------------------------------------CACAGCTTGCACTCGTCT....................................................................................................................1930.3310010
......................................................................................................................................................ATGCAACGTCTGATCCCGCTT...............................................................2130.3311000
..............................................................................................................................................................................................................ATCTGCTATCCGGGACTGGAC.......2140.2510010
.....................................................................................................................................................................................................GA---CTTCATCTGCTATCCGGG..............2040.2510001
dm3
GGCGAAGGCCTTCGAGCAAATGTTACACACGAAAGGCCGCACATCGTTGTGCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCGATGCAACGTCTGATCCCGCTTGCTTCTGAAGGTCTGC-----------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...GAAGGCCTTCGAGCAAATGT...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CTCGTAGGTGGTCTTGTTGTGGT....................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................................................................TCCCCGAATTGCAGAAA...............................................................................................................................................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGCGAAGGCTTTCGAGCAGATGTTACACACGAAGGGCCGCACATCGTTGTGCACCTTCATGTGCCGATCCAGGTTTCCCGAATTGCAGAAGCTCTTCGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGTCGATGCAACGTCTGATCCCGCTTGCTCTTGAAGGTCTGC-----------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GGCAAAGGCTTTCGAGCAGATATTACACACGAAGGGCCGCACATCGTTGTGCACCTTCATGTGGCGATCCAGGTTCCCAGAATTGCAGAAGCTCTTCGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGTCGATGTAACGTCTGATCCCGCTTGCTCTTGAAGGTCTGC-----------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GGCAAAGGCCTTCGAGCAGATGTTGCACACAAAGGGTCGTACATCGTTGTGCACCTTCATGTGGCGGTCGAGGTTCCCCGAGTTGCAGAAGCTCTTGGCGCACAGCTTGCACTCGTATGTGGTCTTGTTGTGGTTATGCACCTCCTGCCGGTGCAGTGTCTGGTCCCGCTTACTCTTGAAGGTCTGCATCAGAA----------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGCGAAGGCCTTCGAGCAGATGTTGCACACAAAGGGCCGCACATCGTTGTGCACCTTCATGTGGCGGTCCAGGTTGCCCGAGTTGCAGAAGCTCTTGGCGCACAACTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTGCGAATGAGGATAATGGTTAGATCTGGTTTCTAGGAC------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCGAAGGCCTTCGAGCAGATGTTGCACACGAAGGGCCGCACATCGTTGTGCACCTTCATGTGGCGATCGAGGTTGCCCGAGTTGCAGAAGCTCTTGGCGCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTG------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCGAAGGCCTTCGAGCAAATGTTGCACACGAAGGGCCGGACATCGTTGTGCACCTTCATGTGGCGATCGAGATTGCCCGAGTTGCAGAAGCTCTTCGCGCACAACTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCTGTGCAGCGTTTGGTCCCGCTTGCTCTTGAAAGTCTGTCACCCAA----------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGCGAAGGCTTTAGAGCAGATGTTGCACACGAAGGGTCGAACATCGTTGTGGACCTTCATGTGACGATCAAGATTCCCCGAGTTGCAGAAACTCTTGGCGCACAACTTACACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCTGTGCAGCGTTTGGTCCCGCTTACTTTTAAAAGTCTATTACCAAAG---------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGCGAAGGCCTTCGAGCAGATGGTACACACAAAGGGCCTCACATCGTTGTGCACCTTCATGTGGCGGTCGAGGTTCCCCGAGTTGCAGAAGCTCTTGGCGCACAATTTGCATTCGTAGGTTGTCTTGTTATGGTTGTGCACCTCTTGCCGATGGAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTGCAGCCAAA----------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGCAAAGGCCTTAGAACAGATATTACACACAAAGGGCCGGACATCATTGTGCACCTTCATGTGCCGATCGAGGTTGCCCGAGTTGCAGAAGCTCTTGGCGCACAGCTTGCACTCGTAAGTGGTCTTGTTGTGGTTGTGCACCTCCTGCCGATGCAGCGTCTGGTCCCGCTTACTCTTGAAGGTCTGCAAGGGAGGATTA---C-------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GGCAAAGGCCTTCGAGCAAATGTTGCACACAAAAGGACGCACATCGTTGTGCACCTTCATGTGGCGATCGAGATTTCCTGAGTTGCAGAAGCTCTTGGCACAAAGCTTGCACTCGTAGGTAGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAACGTCTGGTCCCGCTTGCTCTTGAAGGTCTGC-----------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................GGTTGTGCACCTCCTGCCG....................................................................................1911.001010000
droBip1
GGCAAAGGCCTTCGAGCAAATGTTGCATACAAATGGACGCACATCGTTGTGCACCTTCATGTGGCGATCGAGATTTCCTGAGTTGCAGAAGCTCTTGGCACACAGCTTGCACTCATAGGTAGTCTTGTTGTGGTTGTGCACCTCCTGCCGGTGCAGCGTCTGGTCCCGCTTGCTCTTGAAGGTCTG------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GGCAAACGCCTTCGAGCATATGTTGCAGACAAACGGCCGCACGTCGTTGTGCACCTTCATATGGCGATCCAGGTTGCCCGAGTTGCAAAAACTCTTTGCACAAAGCTTGCATTCATAGGTAGTTTTGTTGTGATTATGAACCTCCTGGCGGTGAAGGGTCTGGTCGCGTTTGCTCTTGAACGTCTG------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................AAACTCTTTGCACAAAGCT...............................................................................................................................1911.0010000010000
droPer2
GGCGAACGCCTTCGAGCATATGTTGCAGACAAACGGCCGCACGTCGTTGTGCACCTTCATATGGCGATCCAGGTTGCCCGAGTTGCAAAAACTCTTTGCACAAAGCTTGCATTCATAGGTAGTTTTGTTGTGATTATGAACCTCCTGGCGGTGAAGGGTCTGGTCGCGTTTGCTCTTGAACGTCTG------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................GGTCGCGTTTGCTCTTGAACGT...................................................2211.001010000
droWil2
GGCAAAGGCCTTCGAGCATATATTGCACACGAATGGACGCACATCGTTGTGGACCTTCATGTGACGATCCAAATTGCCCGAATTGCAAAAACTTTTCGAGCACAATTTGCATTCATATGTCGTTTTATTGTGATTGTGCGCTTCCTGACGATGCAGCGTCTGGTCGCGTTTGGTCTTGAAGGTCTGC-----------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TGCAAAGGCCTTGGAGCAGATGTTGCACACAAACGGCCGCACATCGTTGTGCACCTTCATGTGCCGATCCAGATTGCCACTGTTGCAAAAACTCTTGGCGCACAATTTGCACTCATAGGTAGTTTTGTTATGGTTGTGCACCTCCTGTCGATGGAGCGTCTGATCGCGTTTACTTGTAAACATCTGC-----------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TGCAAACGCCTTCGAGCATATGTTACATACAAAGGGACGCACATCGTTATGGACCTTCATGTGGCGATCCAGATTGCCGCTGTTGCAGAAATTTTTGGCGCACAGTTTGCATTCGTAGGTAGTTTTGTTATGATTGTGCACCTCCTGGCGATGGAGCGTTTGATCGCGTTTACTTTTAAACGTCTGC-----------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGCGAACGCCTTGGAGCATATGTTGCACACAAACGGCCGCACATCGTTGTGCACCTTCATGTGGCGGTCGAGGTTGCCACTGTTGCAGAAACTCTTGGCGCACAGTTTGCACTCATAGGTAGTTTTGTTGTGGTTGTGCACCTCTTGCCGATGCAGTGTCTGATCGCGTTTGCTCTTAAACGTCTGCAATTGA-----------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:51 PM