ID:

dsi_28454

 Coordinate:

3l:8126897-8127046 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_8127047_8127185_+]; exon [3l_8127047_8127185_+]; intron [3l_8126644_8127046_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGTAAAATCAAAATGTATTTCTTATATAAAAGGGTAGAACAGTTTTTAATCTTCGGATGGCAATAAATACCGATACATTTAAAATCAAAGTGCAAAAATTAAAAGCGACAAAGAAACAAAATCAAATTTATTAATGATTTTCGTTTTGCAAACAAGATTTACGCCTTAATATATGCTGAGCATTTTATTGCATTTGTAGGTTTTCGTGTTAATCACAAAAGTATACGCCGCGTTGTCCAATCCATTGCC
**************************************************....((((((.(((((((........(((((.......)))))............(((.....((((((((((((..........))))))).)))))..............)))........((((...)))))))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
...........................................................GACAATAAATAACGATACA............................................................................................................................................................................ 19 2 5 6.00 30 29 0 0 0 0 1 0 0
..........................................................TGACAATAAATACTGATACA............................................................................................................................................................................ 20 2 2 3.50 7 0 4 3 0 0 0 0 0
..........................................................TGACAATAAATAACGATACA............................................................................................................................................................................ 20 2 2 2.50 5 4 0 0 1 0 0 0 0
..........................................................TGACAATAAATACTGATA.............................................................................................................................................................................. 18 2 13 2.31 30 0 14 15 0 0 1 0 0
..........................................................TGACAATAAATACTGATAC............................................................................................................................................................................. 19 2 2 2.00 4 0 4 0 0 0 0 0 0
.........................................................GTGACAATAAATAACGATACA............................................................................................................................................................................ 21 3 6 1.33 8 6 0 0 2 0 0 0 0
...........................................................GACAATAAATAACGATACAG........................................................................................................................................................................... 20 3 20 1.20 24 22 0 0 2 0 0 0 0
...............................................................................................................................................................................................................................ATACGCCGCGTTGTCCAA......... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................TGACAATAAATACCGATA.............................................................................................................................................................................. 18 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................TTTCGTTTTGCAAAAAA.............................................................................................. 17 1 20 0.70 14 0 8 5 0 0 1 0 0
..........................................................TGACAATAAATACTGATACAG........................................................................................................................................................................... 21 3 7 0.57 4 0 2 1 0 0 1 0 0
..........................................................TGACAATAAATAACGATACAG........................................................................................................................................................................... 21 3 7 0.43 3 3 0 0 0 0 0 0 0
........................................CAGTTTGTAATCTTTGGGTGG............................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 1 0 0
.............................................................CAATAAATAACGATACAG........................................................................................................................................................................... 18 2 17 0.18 3 3 0 0 0 0 0 0 0
...........................................................GGCAATAAATAACGATACAGG.......................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0
....................TCTTATATAAATGGGT...................................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................CCCTAAATACATGCTGAGC.................................................................... 19 3 15 0.13 2 0 0 0 2 0 0 0 0
...........................................................................................................................................TTTCGTTTTGCAATCAA.............................................................................................. 17 1 12 0.08 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................ATTGTACGCCGGGTTGTCC........... 19 3 14 0.07 1 0 0 0 1 0 0 0 0
.........................................................GTGACAATAAATACTGATACA............................................................................................................................................................................ 21 3 14 0.07 1 0 1 0 0 0 0 0 0
.........................................................GTGACAATAAATACTGATAC............................................................................................................................................................................. 20 3 16 0.06 1 0 1 0 0 0 0 0 0
..............................................................AATAAATACTGATACA............................................................................................................................................................................ 16 1 17 0.06 1 0 0 1 0 0 0 0 0
.............................................................CAATAAATAACGATACAC........................................................................................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 0 0 1
.............................................................CAATAAATACTGATACAGG.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGCATTTTAGTTTTACATAAAGAATATATTTTCCCATCTTGTCAAAAATTAGAAGCCTACCGTTATTTATGGCTATGTAAATTTTAGTTTCACGTTTTTAATTTTCGCTGTTTCTTTGTTTTAGTTTAAATAATTACTAAAAGCAAAACGTTTGTTCTAAATGCGGAATTATATACGACTCGTAAAATAACGTAAACATCCAAAAGCACAATTAGTGTTTTCATATGCGGCGCAACAGGTTAGGTAACGG
**************************************************....((((((.(((((((........(((((.......)))))............(((.....((((((((((((..........))))))).)))))..............)))........((((...)))))))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................GTTTGTTCTAAAAGCGGA................................................................................... 18 1 1 2.00 2 2 0 0 0
......................................................................................................................................................................................................................................AGCAACAGGGTAGGTAAC.. 18 2 6 1.67 10 0 4 6 0
.......................................................................................................................................................................................................................................GCCATAGGTTAGGTAACG. 18 2 3 0.33 1 0 1 0 0
.......................................................................................................................................................................................................................................GCAACATGTTAGGTAACA. 18 2 7 0.29 2 0 2 0 0
.......................................................................GCTATGTCGATTTTAGTTTCT.............................................................................................................................................................. 21 3 4 0.25 1 1 0 0 0
......................................................................................................................................................................................................................................GGCAACAGGGTAGGTAAC.. 18 2 7 0.14 1 0 0 1 0
....................................................................................................................................................................................................................................TGAGCAACATGTTAGGTAAC.. 20 3 9 0.11 1 0 1 0 0
........................................................................GTATGTCGATTTTAGTTTC............................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:42 AM