ID:dsi_28412 |
Coordinate:3l:7325434-7325583 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -29.8 | -29.8 | -29.6 |
 |
 |
 |
intergenic
No Repeatable elements found
|
TGGATAATGAGGAAACAGGAGTCATTCAGAGATTACTCAGCGTTGGGAAGCTACAGATCTACAAGTACATAATCTACTTTGTGTGGGTGGTCAATTTCGTAGGTACTATCATGGAAGCCAAGAAAAAGCCACTACAAAGGTGTTCCCACCCACAGATATTCACCTGTGCGGATGTTTACATATATTATTTCATACTGAAGGACCACATGGGCTGCTGGAATTGTTTGTTCAGGTCCTACATGATAATCGC
**************************************************...(((......(((((.......)))))..(((((((((.((.(((.((((...((.((.(((...))).))...))...)))).))).))...)))))))))(((((((........)))))))..................)))...************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR902009 testis |
O001 Testis |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................TCATACTGAAGGACCACATGG........................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................CAGATATTCACCTGTGGCGTT............................................................................. | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................AGGTACTATCATGGAAGCCAA................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................................GTACTACCATGGAAGC.................................................................................................................................... | 16 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................TACTACCATGGAAGTCAA................................................................................................................................. | 18 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................CTTTGTGTGGGTGGTCTTT........................................................................................................................................................... | 19 | 2 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................ACTACCATGGAAGTCAAAAA.............................................................................................................................. | 20 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....AGTGAGGAAACAGGA...................................................................................................................................................................................................................................... | 15 | 1 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 1 |
| ...................................................................................................................................................................................................................CTGTTGGAATAGTTGGTTCA................... | 20 | 3 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 |
| .......TAAGGAAATAGGAGACATTC............................................................................................................................................................................................................................... | 20 | 3 | 17 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................................................ATTGTTTGTGCACGTCC.............. | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................CAAGAAAAAGCTACT..................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
| ..........................................TTGGGAAGGTACAGAC................................................................................................................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
|
ACCTATTACTCCTTTGTCCTCAGTAAGTCTCTAATGAGTCGCAACCCTTCGATGTCTAGATGTTCATGTATTAGATGAAACACACCCACCAGTTAAAGCATCCATGATAGTACCTTCGGTTCTTTTTCGGTGATGTTTCCACAAGGGTGGGTGTCTATAAGTGGACACGCCTACAAATGTATATAATAAAGTATGACTTCCTGGTGTACCCGACGACCTTAACAAACAAGTCCAGGATGTACTATTAGCG
**************************************************...(((......(((((.......)))))..(((((((((.((.(((.((((...((.((.(((...))).))...))...)))).))).))...)))))))))(((((((........)))))))..................)))...************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................CAAGGGTGGGTGTCTATAAGT........................................................................................ | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................AAAGTATGACTTCCTGGTGTA.......................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................TTCGATGTCGAGATGGT.......................................................................................................................................................................................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 |
| .......................................................................................................................................TTTCCACAAGGGCGGGC.................................................................................................. | 17 | 2 | 15 | 0.07 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................................................................AGGGTACGTGTCTATAA.......................................................................................... | 17 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 |
| ............................................................................................................................TTTCAGTGATGTTCCCAG............................................................................................................ | 18 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
| ......................................TCGCAAGGCTTCGATG.................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................................TGCTGTAGCCACAAGGGT...................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
Generated: 04/24/2015 at 05:12 AM