ID:

dsi_28409

 Coordinate:

2r:5073419-5073587 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.6 -36.6

Flybase annnotation

Antisense to three_prime_UTR [2r_5073310_5073489_-]; Antisense to CDS [2r_5073490_5073969_-]; Antisense to exon [2r_5073310_5074087_-]

No Repeatable elements found

Sense Strand Reads

AACCTATTCGACTTTAAACTAAAACTCGACATCTAACATATGAAGCAAAGGCAAATTAAATCCACAATAGTTAAGATCGAAGTTGATAGCGAAAACCATGGTACTTGGCTTTTTAGATCAGTTAGTATCCATCAATCGCCATTCGATCTGCGGCAGCTTCTACGTAACGCCTTTTGTTTTTGCTTTGGGTGGAGATAAACTGCGAGATGAATTGTGTAGCAGGCATTGCGATCCTCTGGAGGCGCTTATTGGGGTCGGTAGTTCGGCGG
**************************************************............((((((.....((((((((..((...((((.....((((((((.((((.........)))))))).))))...))))))))))))))((....)).....(((..(((..((((((((((((...))))))))))))..)))..))).))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................................................................TCTGCGGCAGCTTCTACGTA....................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TGAGGTCGGTAGTTCG.... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGAGATGACTTGTGTA................................................... 17 2 8 0.38 3 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................GTGAGGTCGGTAGTTCG.... 17 2 3 0.33 1 0 1 0 0 0 0 0 0 0
...........................................................................................................GCTTTTTAGAACAGTGAGGAT............................................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................GGGGTCGGGAGTTCGA... 16 2 20 0.25 5 3 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GGGGTCGGGAGTTCG.... 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TGGGGTCGGAAGTTC..... 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TTGGGGTCGGGAGTTCGA... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GTTGGGGTCGGGAGTTCG.... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CGTGGGGTCGGTAGTTCGA... 19 3 8 0.13 1 0 1 0 0 0 0 0 0 0
..............................................................................................................TTTTAGAACAGTGAGGATC............................................................................................................................................ 19 3 17 0.12 2 0 0 0 1 0 0 0 1 0
....................................................................................................................................................................................TGCTTTGGTTGGAGA.......................................................................... 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0
......................................................................................TAGCGACCACCCTGGTACT.................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GGGGTCGGTAGTTCGAGT. 18 3 20 0.10 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GGTGAGGTCGGTAGTTCG.... 18 3 20 0.10 2 0 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TTGCAGGCATTGCCATCCGC................................. 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................GTGAGGTCGGTAGTTCGA... 18 3 20 0.10 2 0 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................TGATTGCGGTCGGGAGTTC..... 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
.........................................................................................................TGGCTCTTTAAATCAGTT.................................................................................................................................................. 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACTGCGATCCACTGGTGGCG......................... 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................GGGTCGGTAGCTCAGGGG 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GTCGGTAGAACGGCGG 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................GGGTCGGTAGCTCAGC.. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................GTTGAGAGCGAAAACCG........................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

#############################################################################################################################################################################################################################################################################
TTGGATAAGCTGAAATTTGATTTTGAGCTGTAGATTGTATACTTCGTTTCCGTTTAATTTAGGTGTTATCAATTCTAGCTTCAACTATCGCTTTTGGTACCATGAACCGAAAAATCTAGTCAATCATAGGTAGTTAGCGGTAAGCTAGACGCCGTCGAAGATGCATTGCGGAAAACAAAAACGAAACCCACCTCTATTTGACGCTCTACTTAACACATCGTCCGTAACGCTAGGAGACCTCCGCGAATAACCCCAGCCATCAAGCCGCC
**************************************************............((((((.....((((((((..((...((((.....((((((((.((((.........)))))))).))))...))))))))))))))((....)).....(((..(((..((((((((((((...))))))))))))..)))..))).))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................TCGTCCGTAACGCTAGGAGACCT............................. 23 0 1 2.00 2 0 2 0 0 0 0 0
....................................................ATTAATTTAGGTGTTATCAATT................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................TTAATTTAGGTGTTATCAATT................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................CCGTCGAAGATGCATTGCGGAAAACAAA.......................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................CGCGAATACCGCCAGCCA.......... 18 2 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................................................................................TCGAAGATGCATTGCGGAAAACAA........................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................AACCGAAAAATCTAGTCAATC................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................AGCTAGACGCCGTCGAAGATGCATT...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............ATTTGATTTTGAACTGTACATTT........................................................................................................................................................................................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0
.......................................................AATTTAGGTGTTATCAATTCT................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................CTATCGCATTTGGGACCATA..................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0
.............................................................................................................................................AAGCTAGACGCCGTC................................................................................................................. 15 0 2 0.50 1 0 0 0 1 0 0 0
.............................................................................................................AAAATTCTAGTCAATCA............................................................................................................................................... 17 1 3 0.33 1 0 0 0 0 0 0 1
......................TTGGGCTGTAGATTG........................................................................................................................................................................................................................................ 15 1 4 0.25 1 0 0 0 1 0 0 0
...........................................................................................................AAAAAAATCTAGTCAATCA............................................................................................................................................... 19 2 11 0.09 1 0 0 0 1 0 0 0

Generated: 04/23/2015 at 09:21 AM