ID:

dsi_28408

Coordinate:

3r:4550250-4550399 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-20.2	-20.1	-20.1

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

GCGCTCTAATACCAGTGGCTCCACCACCAGATCCTACGACAGCGGAAGCGGTAAGTAGTCCATGCACTGAGAAAAACCGGCTAGCACTTTGAAATGCACTATATTTGGACTTTGAGATTGTTATTGTTGCTTAAAGCTATGTTTTTTATAAAATTTTTTATAAAACTCTACTCAAAAAGTTTTAGGATCTCTCAATGGTTTACTTAACTTATAAAGTATCTAAAATACATTATTGTGTTGCAATTTAAAG ************************************************.........((((.....((((.....(((((((((.(((.(((....(((....)))..))).))).)))))..))))(((((((((.((..(((((((((....))))))))).......))...))))))))).))))...))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.............................................................................................................................................................TTCTAAAACTCTACTCAACA.........................................................................	20	2	1	2.00	2	0	2	0	0	0
.....................................................................AGAAAAACCGGCTAGCAC...................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0
.....................................................................AGAAAAACCGGCTAGCACT..................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................AAAAAGTTTTATGATGTCTGAA.......................................................	22	3	6	0.50	3	0	3	0	0	0
.........................................................................................................TGGACTGTGAGATTG..................................................................................................................................	15	1	7	0.14	1	0	0	1	0	0
................................................CGGTAAGCAGTCCATGCTG.......................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1
...........................................................................................................GACTTTGAGATTGACAT..............................................................................................................................	17	2	20	0.05	1	0	0	0	1	0

Anti-sense strand reads

CGCGAGATTATGGTCACCGAGGTGGTGGTCTAGGATGCTGTCGCCTTCGCCATTCATCAGGTACGTGACTCTTTTTGGCCGATCGTGAAACTTTACGTGATATAAACCTGAAACTCTAACAATAACAACGAATTTCGATACAAAAAATATTTTAAAAAATATTTTGAGATGAGTTTTTCAAAATCCTAGAGAGTTACCAAATGAATTGAATATTTCATAGATTTTATGTAATAACACAACGTTAAATTTC ************************************************.........((((.....((((.....(((((((((.(((.(((....(((....)))..))).))).)))))..))))(((((((((.((..(((((((((....))))))))).......))...))))))))).))))...))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	GSM343915 embryo	M024 male body	SRR553488 RT_0-2 hours eggs
..................GAGGTGGTGGTCTAGGATG.....................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................GGTACGTGACTCTTTTTGGCCG.........................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................GAAGCTGTCGCTTTCGCCA......................................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................AAAAAATATTTTGCGATAAGATT..........................................................................	23	3	2	0.50	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................AAAAAATATGTTGATAGGAGT............................................................................	21	3	4	0.25	1	0	0	0	0	1	0	0	0
..............................................TCGCTATCCATCAGGTTCGT........................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	1	0	0
.....................GTGGTGGGCTAGGAT......................................................................................................................................................................................................................	15	1	9	0.11	1	1	0	0	0	0	0	0	0
.......................................................................................................................CAATAACAAGGAATCTCG.................................................................................................................	18	2	10	0.10	1	0	0	1	0	0	0	0	0
.................................................................................................................................................................................TCAAAGTCCTAGAGA..........................................................	15	1	14	0.07	1	0	0	1	0	0	0	0	0
..........................................................AGGTACGTGAATCTTT................................................................................................................................................................................	16	1	15	0.07	1	0	0	1	0	0	0	0	0
...............................................TGTGATTCATCAGGTACGT........................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	1	0	0
................CCGGGGTGATGGGCTAGGA.......................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0
..............................................................................................................................................................ATATCTTGAGATGTGTTTTG........................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/24/2015 at 09:34 AM