ID:

dsi_28397

 Coordinate:

3l:11522783-11522846 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11522629_11522782_-]; exon [3l_11522066_11522782_-]; CDS [3l_11522847_11523094_-]; exon [3l_11522847_11523094_-]; intron [3l_11522783_11522846_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
GCAAAGGAGCTTAACACGCAGGCCATGCGGGAAAAGTACAATAGAGACACGTAAGTCGCAAACATTAGATAGCCGAAGAAGGAGCCCGTGTTGACCCAATGTGTTTCTTAACAGTTACAAGAAGGTGGCTATGATGGAATCCGTTGAGATGAGCAAGGACGACT
**************************************************............................(((((((.(((.........))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 M025
embryo
..................................................................................................................TTACAAGAAGGTGGCTATGATGGAA......................... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
.......................CATGCGGGAAAAGTACAATAGA....................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGGAATCCGTTGAGATGAGCAAGGAC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................CTACAAGAAGGTGGCTATGATGGAATC....................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TACAAGAAGGTGGCTATGATGGAATCCG..................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TCCGTTGAGATGAGCAAGGACGA.. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TACAAGAAGGTGGCTATGATGGAATC....................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................TGGCTATGATGGAATCCGTTGAGA............... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................TCCGTTGAGATGAGCAAGGACGACT 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................TGCGGGAAAAGTACAATAGAGACACTT................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..AAAGGAGCTCAACACGCAGGCCAT.......................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................ATGGAATCCGTTGAGATGAGCAAGGA..... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................TGGTGACCCAATGCGTTTC......................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.CAAAGGAGCTCAACACGCAGG.............................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................CTTACAAGAAGGTGGCTATGATGGA.......................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................TATGATGGAATCCGTTGAGATGAGC.......... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................CGTTGAGATGAGCAAGGAC.... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................GCTATGATGGAATCCGTTGG................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TGTTGACGCAATGTGATTCTG....................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................TTGAGATGAGCAAGGA..... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...AAGGAGCTCAACACGCAGGCC............................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................TGATGGAATCCGTTGAGATGAGCAA........ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................TATGATGGAATCCGTTGAGA............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..AAAGGAGCTCAACACGCA................................................................................................................................................ 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................AAGAAGGTGGCTATGATGGAATCCGT.................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................GTGTTGACACAATGTGT............................................................ 17 1 7 0.71 5 0 5 0 0 0 0 0 0 0 0
.........................................................................................GTTGACGCAATGTGATTCTG....................................................... 20 3 6 0.33 2 0 0 0 0 0 0 0 1 1 0
...............................................................................................................................................TTGAGATGAGCAAGGACTT.. 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
........................................................................................TGTTGACCCAATGTGA............................................................ 16 1 9 0.22 2 0 0 0 0 0 0 2 0 0 0
........................................................................................TGGTGACCCAATGCGTTT.......................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................ATGATGCGATCCGTTGAG................ 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TGTTGACACAATGTGT............................................................ 16 1 11 0.18 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................TATGATAGAATCCGT.................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TGGTGACCCAATGCGTATC......................................................... 19 3 15 0.13 2 0 2 0 0 0 0 0 0 0 0
............AACTCGCAGTCCATGCGG...................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1
.......................................................................................GTGTTGACGCAATGT.............................................................. 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0
........................................................................................TGGTGACCCAATGCGTT........................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................GTGTTGACCCGATGTGA............................................................ 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................GTGTTGACACAATGTGTC........................................................... 18 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TGATGCGATCCGTTGAG................ 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0
................................................................................GGAGCCAGTGTTGACAC................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TGTTGACGCAATGTG............................................................. 15 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GTTGACACAATGTGT............................................................ 15 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
..........................................................CAAACATGAGAAAGCCGAAA...................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TGGTGACCCAATGCGTTA.......................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.......................................................................TCGGAAGAAGGAGCCC............................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGTTTCCTCGAATTGTGCGTCCGGTACGCCCTTTTCATGTTATCTCTGTGCATTCAGCGTTTGTAATCTATCGGCTTCTTCCTCGGGCACAACTGGGTTACACAAAGAATTGTCAATGTTCTTCCACCGATACTACCTTAGGCAACTCTACTCGTTCCTGCTGA
**************************************************............................(((((((.(((.........))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
........................................................................................................................................AATAGGCAACTCTACTCGT......... 19 2 1 1.00 1 1 0 0 0 0
....................................................................................GGGCACAACTGGGTTACACAA........................................................... 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................CACCGATACTACCTTAGGCAA................... 21 0 1 1.00 1 1 0 0 0 0
.....................................................................ATCGGCTTCTTCCTCGGGCAC.......................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................CTACCTTAGGCAACTCTACTCG.......... 22 0 1 1.00 1 0 1 0 0 0
.........................................................................................CCACTGGGTTACGCAAAG......................................................... 18 2 3 0.33 1 0 1 0 0 0
.......TCGAATTGTGCGTGC.............................................................................................................................................. 15 1 4 0.25 1 0 0 1 0 0
........................................................................................ACCACTGGGTTACGCATAG......................................................... 19 3 15 0.07 1 0 1 0 0 0
........................................................................................................AAAAATTGCCAATGGTCTT......................................... 19 3 20 0.05 1 0 0 0 1 0
...........................................................................................ACTGGGTTACGCAATG......................................................... 16 2 20 0.05 1 0 1 0 0 0
...........................................................................................................................CCACCGATACTGCCCT......................... 16 2 20 0.05 1 0 0 0 1 0
...........................................................................................ACTGGGTTACGCCAAG......................................................... 16 2 20 0.05 1 0 1 0 0 0
........................................................................GGCCGCTTCCTCAGGCACA......................................................................... 19 3 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:25 AM