dsi_28391

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

CTGAATAAGGTTTTGTTGCATGTGTTGTAAATTACCGTATGACGCAAGCTTATATATGTTTTTTTTAGATCTTTTTACATTAAAAAATATACACTTATAAATATAAAATTTTTATTTTATTACTGAGCATAGAAATAAATTTGTAAAATAAACGCATATACATACATTTATATTAAAAGTAATGCTATAACTTATTCCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT ************************************************....((((((((((.................))))))))))...((((((((.....((((((((((((....)))).))))))))..)))))))).......((((.(((.................)))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries
.............TGTTGCATGTGTTGTAAATTACCGTA...................................................................................................................................................................................................................	26	0	3	0.67	2	2	0	0	0	0	0	0
...........................................................................................................................................................................................TAACTTATTCCAGGTTGATCTGAGGC.....................................	26	0	3	0.67	2	0	2	0	0	0	0	0
.....................................................................................................................TATTACTGAGCATAGAAATAAATTTGTA.........................................................................................................	28	0	3	0.67	2	2	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGGGC.................	26	0	3	0.67	2	1	1	0	0	0	0	0
...................................................................................................................................................................................................TGTATGTTGATCTGAGGCACATGGATGA...........................	28	3	3	0.33	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................CAGTAGAGCAGCAACGTTGT......	20	3	6	0.33	2	0	0	0	2	0	0	0
...............................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGG...................	24	0	3	0.33	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................ATCTGAGGCACATGGATGAACAACAG....................	26	0	3	0.33	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................CATGGAAGAACAAGAGCGCAGC..............	22	3	3	0.33	1	0	0	1	0	0	0	0
................................................................................................................................................................................................................................CAATAGAGCAGCAACGGTGT......	20	3	7	0.14	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................TAATTCCAGGTTGTTCTG.........................................	18	2	8	0.13	1	0	0	0	0	0	1	0
....................................................................................................................TTATTACCGAACATAGAAAAA.................................................................................................................	21	3	15	0.07	1	0	0	0	0	0	0	1

GACTTATTCCAAAACAACGTACACAACATTTAATGGCATACTGCGTTCGAATATATACAAAAAAAATCTAGAAAAATGTAATTTTTTATATGTGAATATTTATATTTTAAAAATAAAATAATGACTCGTATCTTTATTTAAACATTTTATTTGCGTATATGTATGTAAATATAATTTTCATTACGATATTGAATAAGGTCCAACTAGACTCCGTGTACCTACTTGTTGTCCCGTCGTTGCAACAACGACA ************************************************....((((((((((.................))))))))))...((((((((.....((((((((((((....)))).))))))))..)))))))).......((((.(((.................)))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..............................................................................................................................................................................................GAATAAGGTCCAACTAGACTCCGT....................................	24	0	3	0.33	1	1	0	0
....................................................ATATACAAAAAAAATCTAGAAAAATCT...........................................................................................................................................................................	27	1	3	0.33	1	0	1	0
..........................CATGTAATGGCATGCTG...............................................................................................................................................................................................................	17	2	7	0.14	1	1	0	0
..........................................................AAAAAATATCTAGACAAATCT...........................................................................................................................................................................	21	3	19	0.05	1	0	1	0
........................................................................................................................................................................................................................ACCTTCTTGTTGTCC...................	15	1	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:22644472-22644721 +	dsi_28391	CTGA--AT----AAGGT-TTTGTTGCATGTGTTGT--AAATTACCG--TATGAC-GCA-------------------------------AGCTTATA---------------------------------------------TATGTTTTTTTTAGATCTTTTT--ACATTAAAAAATATACACTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAA--------------------------------------------AATT----TTTATT--TTAT-TACTGAGC-------------ATAGAAATAAATTTG------T-------------------------------------------------A----------------------------AAATAAACGCATATACA---TACA----TTTATATTAAAAG-TAAT---GCTATAAC--TTATTCCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT
droSec2	scaffold_41:172323-172571 +		CTGA--AT----AAGGT-TTTGTTGCATGTGTTGT--AAATTACCG--TATGAC-GCA-------------------------------AGCTTATA---------------------------------------------TATATTT-TTTTAGATCCTTTT--ACATTAAAAAATATACACTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAA--------------------------------------------AATT----TTTATT--TTAT-TACTGAGC-------------ATAGAAAAAAATTTG------T-------------------------------------------------A----------------------------AAATAAACGCACATACA---TACA----TTTATATTAAAAA-TAAT---GCTATAAC--TAATTCCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT
dm3	chr3L:23255605-23255857 +		CTGA--AT----AAGGT-TTTGTTGCATGTGTTGT--AAATTAACG--TATAAC-GTA-------------------------------AA-----------------------------------------TGAACGTATATATATTTTTTTTAGATATTTTT--ACATTA-AAAATATACACTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAA--------------------------------------------AATT----TTTATT--TTAT-TACTGAGC-------------ATAGAAATACATTTG------T-------------------------------------------------A----------------------------AAATAAATGCATATACA---TACA----TTAATATTAAAAA-TTAT---GCTATAAC--TTATTGCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT
droEre2	scaffold_4784:22923264-22923510 -		CTGA--AT----AAG-TATTTACTGCATGTGGTAT--AAATTATCG--TATGTG-GCA-------------------------------AGCTTCTATT---------------------------------------------------TTTTAGATATTTTT--TTATTG-AAAATATACACTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTA--------------------------------------------AATTGTTTTTTTTA--TTAT-AACTGAGC-------------ATAGAAATACATTTG------T-------------------------------------------------A----------------------------ACATAAATGCATATACA---CACA----TTTACAACATTAT-TAAT---ACTATAAT--TTATTGCAGGTTGATCTAAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCAGT
droYak3	3L:23741806-23742053 +		GTGA--AT----AGG-TATTTATAGCATGTCGTAT--AAATTATCG--TACGTA-GCA-------------------------------GGCTTCTATT---------------------------------------------------TTTTAGCCCTTTTTTTTGATTA-AAACTATACACC-AT--AAATATATATA-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------TT--TATTTG-TAT-TACTAAGT-------------ATATAAATACATTTA------A-------------------------------------------------A----------------------------ACATAAATGCATATACA---CACA----CTTACCAAATTTT-TAAT---ACTAAAAT--TTATTTCAGGTTGATTTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT
droEug1	scf7180000409471:1353429-1353578 -		TTTTCA-------------------CTTGTTCTGT--AAATCTT-A--CATAA---T---------------------------------ATTTATG---------------------------------------------CGTTTTTATTTCATGTACACAT--ACACATAGATGTATTCATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATAT--------------------------------------------AATT----TTTGTT--GTCT-T----------------------ATGAACATATTCA------T-------------------------------------------------G----------------------------AGATCAGTAATG--ATA---TTTA----TGTATATTAAAA------------------------------------------------------------------------------
droBia1	scf7180000302519:177826-177980 +		ATGT--TC----A----------------------------------------------------------------------------------TTATTTTTAGGTCGATTGCATTAGAGAACAGTTTTC------------------------------------------------------TGA--------------------------------------------------------------------------------------------------A-------------------------T---------------------------------------ATGT-TTAT---------------------------------------TT----TG------------------------------------TATTGTGTTTATTAATTT-------------------------------------------------A----------------------------ATATAAATGAATTTATA---C---------------------------------------ATTTTAAGGTCGATCTGAGGCACATGGATGAGCAGCAGGGCAGTAATGTAGTGGACGT
droTak1	scf7180000413232:14395-14609 -		CTAAAAAT----TAGGTAATTTTTGCATGACACTT--T-------GAATATATACGCT-------------------------------GGTTTCTAATTTTTAGATCGCTTCCCGAAGTTAATAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------GTATAC-------------------------C---------------------------------------TTT-T-----------------------------------------------TT--CATTTG-TA----------------------------------GTT-------TACTTTTAACTATTAAACATTGAATTTATTAATAA---------------T----------------------------ATTTAATC---------CTAC---------------------------------------TTTTTAAGGTCGATTTGAGGCACATGGATGAGCAACAGGGCAGCAATGTAGTTGACGT
droEle1	scf7180000490623:5629-5877 +		CTTAAATCTGTAAAG-TAGTTATTGTATGTTATTT--GAATTCTCG--TATATGCG-A-------------------------------GGCCTG--------AAATCGGTTATA-TAGTAAATAATTTTCTAA---------------TTTTTAGATTTTGTT--TT-------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------C-----------------------------------------------------------------------T-TGTTAAAC-------------ACGCACTTGCATTT-------TGAATACAAATTTTAAACAT------------------------------------------------------------------------TACG---TACCTGATTCAAAATGA----TGCATACTATTTTTATTCTTCTTTAAGGTTGACTTGAGGCACATGGATGAACAGCAGGGCAGCAACGTGGTCGACGT
droRho1	scf7180000780260:74201-74436 +		TTTA---------AGGTATTAATTGCATGTTAATT--AAATTCTCG--TATATGTGGA-------------------------------GACTTGAAATTTTTAGATTGATTCTATTAGTGAACAACTTACT---------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------TTTAAAGTTTATTTAA------------------------G------------------------------------------------------------------------------TTA-------------TTAGTATTACATTTT------T-------------------------------------------------A----------------------------AATTCATTTTATGTACG---TATCTAATTTTAAATGT----TGCATACCGTTTTTCT--TTTTCTAAGGTCGACTTGAGGCACATGGATGAACAACAAGGCAGCAACGTGGTTGACGT
droFic1	scf7180000453544:26810-27037 +		TTG----------------------CATGTATATTACAAATTCTTG--TGTATGCGTC-------------------------------AGCTTCCAATTTTTAGATCAGTTATTTTAGTGGGCAATTTACTTA-----------------------------------------------------A----ACAT------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTAT---------------------------------------TT----TG--TTTA-AAT-TTTTAAACATAATACAGAATATTA---------ATA------T-------------------------------------------------T----------------------------ATATAATTGCATTTACA---GA-----------ACAT----CACATAT--CTTTTTT--TAATTTAAGGTCGACTTGAGGCACATGGATGAGCAGCAAGGCAGCAACGTTGTTGCCGT
droKik1	scf7180000301762:588-811 -		TG-----------------------CATGTA------AAATCGATG--TATAAC-AAAAGAAAAATTATAATCCGTTTAGTTATCAGTACATTTAAAATCCGTAG-TTTATTTTA--TGTGAATAATTTACCCA-------------------------------------CTGTTTTAATGA---AT-------------------------GTTAATAT---------------AAAAAAATTAATAATATATAATTATAACA-------CATGAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----------------------------------------------TCC--CTTTCTTAGGTCGATCTGCGTCACATGGATGAACAAGTTGGTAGCAACGTTGTTGATGT
droAna3	scaffold_12911:705050-705187 -		TATTGAAT-----------------------------------------------------------------TT------------------------------------------------------------------------TT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------TT--TATTTG-TTT-TTCT-------------------AAAATTGTTTTT---ATTATGAATTT--------------------ATTAATAAAGTAATTTT------------------------------------TTTAAAT---------CTGC---------------------------------------TTTTCAAGGTTGACCTCAGACACATGGATGAACAACAAGGCAGTAACGTAGTTGATGT
droBip1	scf7180000394802:19593-19736 -		TATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTC-AGTGTATTGAAATAAATT----------------------------------------------------------------------------TC---A-------------------------A---------------------------------------ATAA-TTTT-----------------------------------------------CAAA--ATATTCTTCAAAA-------------ATAATCTTAATTTT-------TG-----------------------------------------------------------------------------AATTAAATTCA---------A---------------------------------------ATTTTCAGGTGGATCTGCGGCACATCGACGAACTGAATGGCACCAACGTGGTCGAGGT
dp5	Unknown_group_42:9512-9654 +		CTTAAA----------------------------------------------------------------------------------------------------------------------------------------TATGTTAGTATCAGAATATTTT-CCC-TGCAAATATAAAAATTAAA--ATTT---------------------------------------------------------------------------------------ATA-------------------------------------------------------------------TAC--------------------------------------------AATT----TTTAAT--TTGT-TTCTAAAT-------------ACGATACTATTTCTC------A-------------------------------------------------A----------------------------AAATGCACAAATACATA---GATA----TTTTAGTTA-------------------------------------------------------------------AATGTTTATAATTT
droPer2	scaffold_3663:574-717 +		AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATATATATAAATTTATTCTT-TATATATGAAAATTATTT----------------------------------------------------------------------------TT---A-------------------------T---------------------------------------ATAT-TTAT-------------------------------------------------------------------------------ATGAATATATACCTA------T-------------------------------------------------A----------------------------AACTGGTAATATATATA---TATA----TATATATTAAAAA-GAAT------ATATT--TTAT---------------------------------------------------ATCA
droWil2	scf2_1100000004961:612944-613127 +		TTTG------------------TTGCAAGTATAAA--AAATAA------------------------------------------------------------------------------------------------------------------------------------------------G--ATAT---------------------------------------------------------------------------------------GTACGCAATAAAACATAAGTGTGCACTTGAATATGTTTATGTGTATACATTAATATATTCACAT-AAACATAC---TCACATAAATATACAGCTAAGCATGTTCATATATATATGTACATT----T---------------------------------------------------------------------------------------------------------------------------------------ATGTATGCACATACA---TATA----TTCAAAT--------------------------------------------------------------GAGAAGCA---------ATGC
droVir3	scaffold_12823:306065-306248 -		GTAA--AT----AC-----------------------------------------------------------TT-----------------------------------------------------------------------TAAGCTTTGTTAATTGTG-ACC-TGCTGAAA----------------------------------------------------------------------------------------------------------------TTAAGCAAAGGGTTTTTTTGGAATACATCTAA------------------------A------------------------------------------------------------------------------TTT-------------GTAATATAAAAAAT---AGTTTAAATTA--------------------ATTATTTATATAATTATTTTAAATTAATGAGGCACATTAAGAAGAATTTGTAAAAAAAATGGTCAAAAA---TATA----TTTG-------------------------------------------------------------------------------TCACAAA
droMoj3	scaffold_6540:22362176-22362364 -		GTGAG-----------------------------------ATACTG--TATAAA-ATA-------------------------------AAATTTTATT---------------------------------------------ATTATAATTTAATTTT-----CTA-TATATATATATATATATAT----ATATATATA-TTTTTTTTTTTATTAATAGTAGAAATATGTTATT-------------TAATAT-------AAATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAT-------------G------------------------------------------------------------------------------------------------------AGATAC--TATATA---TGTA----AAAAAACAAAAAT-TAAT---ATTATAAT--TTTCTATACATTGA---------------------------------------------
droGri2	scaffold_15116:633115-633267 -		TATATG-------------------TATGTACATC----------------------------------------------------------------------------------------------------------------------------------------AAAA-----------------ATACATATA-CCTTCATAAATACTAATAACTATATTATAATGTG-------------TTATAT-------ACACATGTACCAAAAATTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC--CTTTATTAGGTCGACTTGAGGCACATGGACGAGCAACAAGGAAGCAATATTGTTGACGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTGA--AT----AAGGT-TTTGTTGCATGTGTTGT--AAATTACCG--TATGAC-GCA-------------------------------AGCTTATA---------------------------------------------TATGTTTTTTTTAGATCTTTTT--ACATTAAAAAATATACACTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAA--------------------------------------------AATT----TTTATT--TTAT-TACTGAGC-------------ATAGAAATAAATTTG------T-------------------------------------------------A----------------------------AAATAAACGCATATACA---TACA----TTTATATTAAAAG-TAAT---GCTATAAC--TTATTCCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................TGTTGCATGTGTTGT--AAATTACCG--TA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--TTATTCCAGGTTGATCTGAGGC.....................................	26	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAT-TACTGAGC-------------ATAGAAATAAATTTG------T-------------------------------------------------A----------------------------......................................................................................................................	28	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGGGC.................	26	3	0.67	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGG...................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAGGCACATGGATGAACAACAG....................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

CTGA--AT----AAGGT-TTTGTTGCATGTGTTGT--AAATTACCG--TATGAC-GCA-------------------------------AGCTTATA---------------------------------------------TATATTT-TTTTAGATCCTTTT--ACATTAAAAAATATACACTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAA--------------------------------------------AATT----TTTATT--TTAT-TACTGAGC-------------ATAGAAAAAAATTTG------T-------------------------------------------------A----------------------------AAATAAACGCACATACA---TACA----TTTATATTAAAAA-TAAT---GCTATAAC--TAATTCCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CTGA--AT----AAGGT-TTTGTTGCATGTGTTGT--AAATTAACG--TATAAC-GTA-------------------------------AA-----------------------------------------TGAACGTATATATATTTTTTTTAGATATTTTT--ACATTA-AAAATATACACTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAA--------------------------------------------AATT----TTTATT--TTAT-TACTGAGC-------------ATAGAAATACATTTG------T-------------------------------------------------A----------------------------AAATAAATGCATATACA---TACA----TTAATATTAAAAA-TTAT---GCTATAAC--TTATTGCAGGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGGGCA................	27	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGGGC.................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAACAGGGCAGCAACGTTGT......	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACATGGATGAACAACAGGG..................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAACAACAGGGCAGCAACGT.........	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAACAGGGCAGCAACGTTGTT.....	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGGCACATGGATGAACAACAGGGC.................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGGCACATGGATGAACAACAGG...................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................................TAT-TACTGAGC-------------ATAGAAATACATT.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACATGGATGAACAACAGG...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAACAACAGGGCA................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTGA--AT----AAG-TATTTACTGCATGTGGTAT--AAATTATCG--TATGTG-GCA-------------------------------AGCTTCTATT---------------------------------------------------TTTTAGATATTTTT--TTATTG-AAAATATACACTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTA--------------------------------------------AATTGTTTTTTTTA--TTAT-AACTGAGC-------------ATAGAAATACATTTG------T-------------------------------------------------A----------------------------ACATAAATGCATATACA---CACA----TTTACAACATTAT-TAAT---ACTATAAT--TTATTGCAGGTTGATCTAAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCAGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGCACATGGATGAACAACAGG...................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

GTGA--AT----AGG-TATTTATAGCATGTCGTAT--AAATTATCG--TACGTA-GCA-------------------------------GGCTTCTATT---------------------------------------------------TTTTAGCCCTTTTTTTTGATTA-AAACTATACACC-AT--AAATATATATA-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------TT--TATTTG-TAT-TACTAAGT-------------ATATAAATACATTTA------A-------------------------------------------------A----------------------------ACATAAATGCATATACA---CACA----CTTACCAAATTTT-TAAT---ACTAAAAT--TTATTTCAGGTTGATTTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

TTTTCA-------------------CTTGTTCTGT--AAATCTT-A--CATAA---T---------------------------------ATTTATG---------------------------------------------CGTTTTTATTTCATGTACACAT--ACACATAGATGTATTCATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATAT--------------------------------------------AATT----TTTGTT--GTCT-T----------------------ATGAACATATTCA------T-------------------------------------------------G----------------------------AGATCAGTAATG--ATA---TTTA----TGTATATTAAAA------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGT--TC----A----------------------------------------------------------------------------------TTATTTTTAGGTCGATTGCATTAGAGAACAGTTTTC------------------------------------------------------TGA--------------------------------------------------------------------------------------------------A-------------------------T---------------------------------------ATGT-TTAT---------------------------------------TT----TG------------------------------------TATTGTGTTTATTAATTT-------------------------------------------------A----------------------------ATATAAATGAATTTATA---C---------------------------------------ATTTTAAGGTCGATCTGAGGCACATGGATGAGCAGCAGGGCAGTAATGTAGTGGACGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTAAAAAT----TAGGTAATTTTTGCATGACACTT--T-------GAATATATACGCT-------------------------------GGTTTCTAATTTTTAGATCGCTTCCCGAAGTTAATAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------GTATAC-------------------------C---------------------------------------TTT-T-----------------------------------------------TT--CATTTG-TA----------------------------------GTT-------TACTTTTAACTATTAAACATTGAATTTATTAATAA---------------T----------------------------ATTTAATC---------CTAC---------------------------------------TTTTTAAGGTCGATTTGAGGCACATGGATGAGCAACAGGGCAGCAATGTAGTTGACGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTTAAATCTGTAAAG-TAGTTATTGTATGTTATTT--GAATTCTCG--TATATGCG-A-------------------------------GGCCTG--------AAATCGGTTATA-TAGTAAATAATTTTCTAA---------------TTTTTAGATTTTGTT--TT-------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------C-----------------------------------------------------------------------T-TGTTAAAC-------------ACGCACTTGCATTT-------TGAATACAAATTTTAAACAT------------------------------------------------------------------------TACG---TACCTGATTCAAAATGA----TGCATACTATTTTTATTCTTCTTTAAGGTTGACTTGAGGCACATGGATGAACAGCAGGGCAGCAACGTGGTCGACGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTA---------AGGTATTAATTGCATGTTAATT--AAATTCTCG--TATATGTGGA-------------------------------GACTTGAAATTTTTAGATTGATTCTATTAGTGAACAACTTACT---------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------TTTAAAGTTTATTTAA------------------------G------------------------------------------------------------------------------TTA-------------TTAGTATTACATTTT------T-------------------------------------------------A----------------------------AATTCATTTTATGTACG---TATCTAATTTTAAATGT----TGCATACCGTTTTTCT--TTTTCTAAGGTCGACTTGAGGCACATGGATGAACAACAAGGCAGCAACGTGGTTGACGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTG----------------------CATGTATATTACAAATTCTTG--TGTATGCGTC-------------------------------AGCTTCCAATTTTTAGATCAGTTATTTTAGTGGGCAATTTACTTA-----------------------------------------------------A----ACAT------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTAT---------------------------------------TT----TG--TTTA-AAT-TTTTAAACATAATACAGAATATTA---------ATA------T-------------------------------------------------T----------------------------ATATAATTGCATTTACA---GA-----------ACAT----CACATAT--CTTTTTT--TAATTTAAGGTCGACTTGAGGCACATGGATGAGCAGCAAGGCAGCAACGTTGTTGCCGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TG-----------------------CATGTA------AAATCGATG--TATAAC-AAAAGAAAAATTATAATCCGTTTAGTTATCAGTACATTTAAAATCCGTAG-TTTATTTTA--TGTGAATAATTTACCCA-------------------------------------CTGTTTTAATGA---AT-------------------------GTTAATAT---------------AAAAAAATTAATAATATATAATTATAACA-------CATGAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----------------------------------------------TCC--CTTTCTTAGGTCGATCTGCGTCACATGGATGAACAAGTTGGTAGCAACGTTGTTGATGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TATTGAAT-----------------------------------------------------------------TT------------------------------------------------------------------------TT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------TT--TATTTG-TTT-TTCT-------------------AAAATTGTTTTT---ATTATGAATTT--------------------ATTAATAAAGTAATTTT------------------------------------TTTAAAT---------CTGC---------------------------------------TTTTCAAGGTTGACCTCAGACACATGGATGAACAACAAGGCAGTAACGTAGTTGATGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTC-AGTGTATTGAAATAAATT----------------------------------------------------------------------------TC---A-------------------------A---------------------------------------ATAA-TTTT-----------------------------------------------CAAA--ATATTCTTCAAAA-------------ATAATCTTAATTTT-------TG-----------------------------------------------------------------------------AATTAAATTCA---------A---------------------------------------ATTTTCAGGTGGATCTGCGGCACATCGACGAACTGAATGGCACCAACGTGGTCGAGGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTTAAA----------------------------------------------------------------------------------------------------------------------------------------TATGTTAGTATCAGAATATTTT-CCC-TGCAAATATAAAAATTAAA--ATTT---------------------------------------------------------------------------------------ATA-------------------------------------------------------------------TAC--------------------------------------------AATT----TTTAAT--TTGT-TTCTAAAT-------------ACGATACTATTTCTC------A-------------------------------------------------A----------------------------AAATGCACAAATACATA---GATA----TTTTAGTTA-------------------------------------------------------------------AATGTTTATAATTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATTTCTC------A-------------------------------------------------A----------------------------AAATGCACA.............................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................GTATCAGAATATTTT-CCC-TGCAAATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTATTTCTC------A-------------------------------------------------A----------------------------AAATG.................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---GATA----TTTTAGTTA-------------------------------------------------------------------AATGT.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................TCAGAATATTTT-CCC-TGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTATCAGAATATTTT-CCC-TGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAT-------------ACGATACTATTTCTC------.....................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATATATATAAATTTATTCTT-TATATATGAAAATTATTT----------------------------------------------------------------------------TT---A-------------------------T---------------------------------------ATAT-TTAT-------------------------------------------------------------------------------ATGAATATATACCTA------T-------------------------------------------------A----------------------------AACTGGTAATATATATA---TATA----TATATATTAAAAA-GAAT------ATATT--TTAT---------------------------------------------------ATCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	558.45	11169	0	970	278	7465	1656	800
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	403.40	8068	1984	1041	158	3670	707	508
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	401.15	8023	84	870	463	4483	1764	359
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	346.25	6925	65	4398	476	1006	246	734
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	336.30	6726	22	2296	182	3180	616	430
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	315.15	6303	2	539	168	4130	772	692
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	214.75	4295	3	2157	266	1283	202	384
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	161.05	3221	1	2945	110	110	18	37
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	51.25	1025	108	380	22	342	121	52
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	41.70	834	8	541	43	169	48	25
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	13.90	278	258	12	2	0	0	6
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	12.40	248	3	178	12	23	7	25
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	12.30	246	0	176	63	2	1	4
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	10.40	208	2	89	7	87	23	0
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	9.85	197	11	65	6	88	20	7
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	7.90	158	0	139	2	3	0	14
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	7.10	142	2	21	4	77	27	11
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	7.00	140	4	134	2	0	0	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	6.95	139	0	114	21	0	1	3
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	6.20	124	13	10	4	69	28	0
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	5.15	103	0	100	1	1	1	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	5.10	102	0	75	3	17	7	0
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	3.05	61	4	39	1	3	2	12
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	2.80	56	11	37	8	0	0	0
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	2.60	52	0	40	11	0	1	0
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	2.55	51	0	50	1	0	0	0
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	2.55	51	2	37	10	0	1	1
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	2.20	44	0	42	0	2	0	0
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	2.20	44	0	44	0	0	0	0
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	2.15	43	2	31	10	0	0	0
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	2.00	40	16	2	0	14	2	6
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.95	39	4	30	0	0	1	4
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	1.95	39	1	33	0	4	1	0
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.85	37	0	4	2	18	1	12
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	1.80	36	0	0	1	22	13	0
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	1.75	35	0	0	0	24	10	1
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.75	35	0	1	1	27	6	0
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.60	32	0	30	0	0	0	2
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	1.55	31	11	9	9	0	2	0
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	1.55	31	11	1	1	8	7	3
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.55	31	0	12	5	4	3	7
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	1.50	30	0	19	1	3	1	6
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	1.45	29	0	6	0	14	2	7
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.45	29	0	1	1	27	0	0
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	1.30	26	2	24	0	0	0	0
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	1.20	24	0	7	7	0	6	4
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.15	23	0	20	1	2	0	0
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.15	23	0	0	0	17	6	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.10	22	0	6	5	6	0	5
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.10	22	1	8	3	9	0	1
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	1.10	22	0	0	1	10	7	4
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	1.10	22	2	2	0	15	3	0
..........................................................................C------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	1.00	20	0	0	0	5	15	0
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.00	20	0	20	0	0	0	0
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.95	19	0	3	0	8	5	3
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.90	18	2	5	0	4	0	7
...................................................................................................................................................TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.90	18	1	0	0	11	4	2
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.90	18	0	0	0	11	4	3
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.85	17	0	15	0	0	0	2
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.85	17	15	1	0	0	0	1
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.85	17	1	9	0	4	0	3
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.80	16	8	2	5	0	0	1
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.75	15	0	0	0	12	2	1
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.75	15	0	10	3	2	0	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	0	1	9	4	0
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.70	14	1	13	0	0	0	0
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.70	14	1	8	1	1	0	3
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.65	13	5	6	1	1	0	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.65	13	0	12	1	0	0	0
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.65	13	0	13	0	0	0	0
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.65	13	1	0	0	1	11	0
...................................................................................................................................................TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.60	12	0	0	0	7	5	0
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.60	12	0	2	1	9	0	0
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.60	12	0	3	0	3	5	1
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.55	11	0	1	1	5	4	0
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.50	10	0	9	1	0	0	0
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.50	10	0	9	1	0	0	0
.........................................................................CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.50	10	0	1	1	5	3	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.45	9	0	1	0	3	5	0
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.45	9	1	0	0	4	4	0
.AGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.45	9	1	8	0	0	0	0
.......T----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.45	9	0	3	0	2	4	0
...C--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.45	9	0	6	2	0	1	0
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.45	9	2	4	0	2	0	1
..GC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.45	9	0	3	4	1	1	0
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.40	8	0	0	0	5	3	0
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	4	1	2	0	1
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.40	8	1	7	0	0	0	0
.............T-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.40	8	0	0	1	5	2	0
............AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--ATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.40	8	1	0	2	4	1	0
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	3	2	0	0	0	1
AAGC--TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.25	5	0	4	0	1	0	0
...................................................................................................................................................TT-TGCTTGATGATTCG--ATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	2	0	0	1	2
......TT----AT-----------------------------------------------------------CC------------------------------------------------------------------------TT-TGCTTGATGATTCG--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	1	2	2	0

droWil2

TTTG------------------TTGCAAGTATAAA--AAATAA------------------------------------------------------------------------------------------------------------------------------------------------G--ATAT---------------------------------------------------------------------------------------GTACGCAATAAAACATAAGTGTGCACTTGAATATGTTTATGTGTATACATTAATATATTCACAT-AAACATAC---TCACATAAATATACAGCTAAGCATGTTCATATATATATGTACATT----T---------------------------------------------------------------------------------------------------------------------------------------ATGTATGCACATACA---TATA----TTCAAAT--------------------------------------------------------------GAGAAGCA---------ATGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................ATTAATATATTCACAT-AAAC....................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................ATAAAACATAAGTGTGCACTT.............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTCACAT-AAACATAC---TCACAT.......................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................CATAAGTGTGCACTTGAATATGTTTA..................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................ATATTCACAT-AAACATAC---TC...........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................T-AAACATAC---TCACATAAATATACAGCT...........................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................AATAAAACATAAGTGTGCACT..............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................CTTGAATATGTTTATGTGTAT...........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

droVir3

GTAA--AT----AC-----------------------------------------------------------TT-----------------------------------------------------------------------TAAGCTTTGTTAATTGTG-ACC-TGCTGAAA----------------------------------------------------------------------------------------------------------------TTAAGCAAAGGGTTTTTTTGGAATACATCTAA------------------------A------------------------------------------------------------------------------TTT-------------GTAATATAAAAAAT---AGTTTAAATTA--------------------ATTATTTATATAATTATTTTAAATTAATGAGGCACATTAAGAAGAATTTGTAAAAAAAATGGTCAAAAA---TATA----TTTG-------------------------------------------------------------------------------TCACAAA

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

GTGAG-----------------------------------ATACTG--TATAAA-ATA-------------------------------AAATTTTATT---------------------------------------------ATTATAATTTAATTTT-----CTA-TATATATATATATATATAT----ATATATATA-TTTTTTTTTTTATTAATAGTAGAAATATGTTATT-------------TAATAT-------AAATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAT-------------G------------------------------------------------------------------------------------------------------AGATAC--TATATA---TGTA----AAAAAACAAAAAT-TAAT---ATTATAAT--TTTCTATACATTGA---------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TATATG-------------------TATGTACATC----------------------------------------------------------------------------------------------------------------------------------------AAAA-----------------ATACATATA-CCTTCATAAATACTAATAACTATATTATAATGTG-------------TTATAT-------ACACATGTACCAAAAATTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC--CTTTATTAGGTCGACTTGAGGCACATGGACGAGCAACAAGGAAGCAATATTGTTGACGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_28391

3l:22644522-22644671 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-10.0	-9.7	-9.7