ID:

dsi_28387

 Coordinate:

3l:2397008-2397157 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.3 -10.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATCCAACCAACCAACTAGACCAGCACAATCCTCCGATTCTCTCTAGCAAGACCGTAGACTAACCCGTAGATCGATCCCAATCCCCAAGAGAGCAAAATACGTATCATGATCATCATCTCATTTCATACAGATCTGTACATATGTTTACTGTTCAAAAGACTTACTTAACTAATCCAACACCGTTGTT
**************************************************((((...((((..(((.......................((((....))))((((((............(((((.....))).))..............))))))...............)))..)))).))))....((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
..........................................................TGACCATCCAACCAACCAACTAGAC....................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................TCATGATGTCATTTCATCCAGA........................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0
..................CCGCCAGGCGGTGAACGAAGCACAGC.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
.......ATTAACGAGATCCGCC................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0
....................................................................................................................................ATGGATCCCAATCGCCAAAA.................................................................................................. 20 3 16 0.25 4 1 0 0 3 0 0 0
...................................................................................CAGCACGATCCTCCGATC..................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1 0
.............................................................................................................CAAGACCGTACCCTAAACCG......................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0
....................................................................................................................................ATGGATCCCAATCGCCAA.................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0
GACGCTGATCAACGACA......................................................................................................................................................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 1
....................GCCAGGCGGTGAAGGGA..................................................................................................................................................................................................................... 17 2 20 0.15 3 0 0 0 0 3 0 0
.............................................................................................................................CCCGTAGTTCGATCCT............................................................................................................. 16 2 18 0.11 2 0 0 0 2 0 0 0
.....TGGTCAAGGAGATCCGCGAGG................................................................................................................................................................................................................................ 21 3 13 0.08 1 0 0 0 1 0 0 0
.........................................................................................................................................TCCGAATACCCAAGAGA................................................................................................ 17 2 17 0.06 1 1 0 0 0 0 0 0
..........................................GCCCGGATGTGAACTATG.............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CTGCGACTAGTTGCTCTAGGCGGTCCGCCACTTGCTTCGTGTCGGGTTTCCACTTGATACTGGTAGGTTGGTTGGTTGATCTGGTCGTGTTAGGAGGCTAAGAGAGATCGTTCTGGCATCTGATTGGGCATCTAGCTAGGGTTAGGGGTTCTCTCGTTTTATGCATAGTACTAGTAGTAGAGTAAAGTATGTCTAGACATGTATACAAATGACAAGTTTTCTGAATGAATTGATTAGGTTGTGGCAACAA
**************************************************((((...((((..(((.......................((((....))))((((((............(((((.....))).))..............))))))...............)))..)))).))))....((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
................................................................................................................................................................................................................CTGAGAAGTGTTCTGAATGA...................... 20 3 6 4.00 24 23 1 0 0 0 0 0 0
..........................................CGGGTTTCAACTTGATGCT............................................................................................................................................................................................. 19 2 1 3.00 3 1 2 0 0 0 0 0 0
.................................................................................................................................................................................................................TGAGAAGTGTTCTGAATG....................... 18 2 2 1.50 3 1 0 2 0 0 0 0 0
.................................................................................................................................................................................................................TGAGAAGTGTTCTGAATGA...................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................CGGGTTTCAACTTGATGC.............................................................................................................................................................................................. 18 2 6 1.00 6 3 3 0 0 0 0 0 0
............GCTCCAGGCAGTCCGGCACTT......................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AACTGAGAAGTGTTCTGAATG....................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TGAGAAGTGTTCTGAATGAC..................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ACTGAGAAGTGTTCTGAATG....................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0
.........................................CCGGGTTTCAACTTGATGCT............................................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0
...............................................................................TCTGGTCGAGTCAGGAGGTT....................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................GACAAGGTTGCTGAAAGAAT.................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................ATCGATTAGGTTGTGCC..... 17 2 7 0.14 1 0 0 0 0 0 1 0 0
..........................................CGGGTTTCAAGTTGATAC.............................................................................................................................................................................................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0
...................TCGGTCCGCCACTTG........................................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................GAATTCATTCGGTTGTGG...... 18 2 10 0.10 1 0 0 0 0 0 0 0 1
............................................................................................................................TGGGCATCAAGATATGGTT........................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................GCATAGCACTCGTAGGAGA..................................................................... 19 3 10 0.10 1 0 0 0 0 1 0 0 0
.........................................CCGGGTTTCAAGTTGATACT............................................................................................................................................................................................. 20 3 11 0.09 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GAGAAGTGTTCTGAATGAC..................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0
....................................................................................................................................TACCTAGGGTTAGCGGTTTT.................................................................................................. 20 3 16 0.06 1 0 0 0 1 0 0 0 0
............................................................TGGTAGGTTGGGTGGT.............................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 1 0 0 0
..........................................CGGGTTTCAATTTGATGCT............................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2396958-2397207 - dsi_28387 GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC---CA------------------------------ACCAAC------CA----A----CTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGATCCC------A---A---------------------TCC--CCAAGAG----AGCAAAATACGTA---------------------TCATGATCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCA---AAA------GA-CTTACTTAA---CT-AATCCAACAC----------------CGTTGTT
droSec2 scaffold_2:2530433-2530678 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC---TA------------------------------ACCAAC------CA----A----CTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGATCCC------A---A---------------------TCC--CCAAGAG----AGCAAAATACGTA---------------------TCATGATCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCA---ACA------GA-C----TTAA---CT-AATCCAACAC----------------CGTTGTT
dm3 chr3L:2509162-2509413 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAT---C-----------------------------CAACCAAC------CA----A----CTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGAACCC------A---A---------------------TCC--CCAAGAG----AGCAAAAGACGTA---------------------TCATGATCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTTTTACTGTTCA---AAA------GA-CTTACTTAA---CT-AATCCAACAC----------------CGTTGTT
droEre2 scaffold_4784:2521851-2522103 - der_700 GACGCTGATCAACGAGATCCGCCAGGCGGTGAATGAAGCACAGCCCAAAGGTGAACTATGACCAAC---CA------------------------------ACCAAC------CAACCAACCAACTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCCAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGATCCC------A-------------------------CCC--CCAAAAG----AACAAAAGACGTA---------------------TCATGATCATCAT----CGCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCC---AAA------GA-C----TTAA---CT-AATCCAACAC----------------CGTTATT
droYak3 3L:9431699-9431957 + GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC---CA------------------------------ACCAAC------CA----A----C-AGACCA-------------------------------------------------------GCACAATCCTCCGAT-CTCCAATC---TCT------CTAGCCCGA--CTGTAG----------------------------ACTAACCC----GTAGATCGATCCC------AACCA---------------------CCC--CCAAAAAAAAAAACGAAAGACGTA---------------------TCATGATCATCAT----ATCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTGA---AAA------AATC----TTAA---CT-AATTCAACAC----------------CGTTATT
droEug1 scf7180000409466:233032-233264 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTATGACCAAC---CA------------------------------ACCAAC------CAACCAA----CCAGACCA-------------------------------------------------------GCACAATCCTCCGAA-------TC---TCT------CTAGCCAGA--CCGTAG----------------------------ACTAACCA----CTAGAACGATCCC------A----------------------------------------------CAGACGTA---------------------TCATGCCCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCC---AAA-----AGC-C------AA---CT-AATCGAACAC----------------TGTTATT
droBia1 scf7180000302428:9271934-9272183 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCTAC---CA------------------------------ACCAAC------CA----A----CCAGACCA-------------------------------------------------------GCACAATCCTTCGAA-------TC---TCT------C-AGCCAGA--ACGTAG----------------------------ACTAACCA----GTAGATCGATCCT------AT--A---------------------CCCCCCAAAAAGAAAAACCGAAAGACATA---------------------TCATGCCCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCA---AAA------GC-C------AA---CT-AATCGAACAC----------------TGTTATT
droTak1 scf7180000415857:263589-263856 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAC---CA------------------------------ACCAAC------CA----A----CCAGACCA-------------------------------------------------------GCACAATCCTCCGAATCTT---TC---TCT------TTAGCCAGA--ACGTAG----------------------------ACTAACCA--TAGTAGTTCGAACCTTTTCCCAACGA---------------------TCC--CCGAAAA----AACGAAAGACCTA-----C------------ATATCATGCCCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCT---AAA------GG-CCTA-AAAA---CT-AATCGAACAC----------------TGTTATT
droEle1 scf7180000491249:2903111-2903390 + GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTATGACCTATGACCAACCA--------------------------ATCAAC------CAACCAACCA-------------------------------ATCAAGC------AACCAAAC------AAACCAGCACAATCCTCCGAA-------TC---TCT------CTAGCCAGA--CCGTAGAAT------------------------AACTAACCT----TTAGATTGAACCC------A---A---------------------TCC--CGA--------AACGAAAAACATA---------------------TCATGCCCGTCATCCAACTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTTCA--AAA-----AGT-C----AAAA---CT-AATCGAACAC----------C-----TGTTATT
droFic1 scf7180000454105:831284-831531 - GACGCTGATCAACGAAATCCGCCAGGCGGTGAACGAAGCGCAGCCCAAAGGTGAACTATGCCCCAC---CAACCAAAACCCAGAAACCAAAAACGAATCCAACC------------------------------------------------------------------------------AACAAGCACAATCCTCCGAA-------TCGAATCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCAATC------------------------------------------------------------GATCAATCAATCAAC---CG-----C---ACCATCAC----CTCATT-----------CCATA--CAGATCT---GTACATAC-GTT-TACTGTTCA---A-A------GA--------------T-AATCGAAC-C----------------TGTTATT
droKik1 scf7180000302441:1233646-1233893 + GACGCTGATCAATGAGATCCGCCAGGCGGTGAACGAAGCCCAGCCCAAAGGTGAACTATGACCAAC---CA-----------------------------AATCAAA------CCACCAACCA---ATGCCA-------------------------------------------------------GCACAAACCTCCGAATCTC---TC---TCT------CTAGCCAAAATC---------------AGGCCGTA-G----TAG-ACTAACCC--CAGTAGA--------------------------------------------------------AAC-------GA----------------------TC---ATCATCAT----CTCATTACTCCACAC--TCTCA--CAGAACT---GTACATAT-GTTTATCTGTTTG---GAA------GC-CCAA-AAAA---CT-AATCAAACA-----------------TATTATT
droAna3 scaffold_13337:531242-531516 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTATGCCCCAC---CAACCTA------GTCAC--GCA----------------------------------------------------------CCGAATCTAGTCACTT-AATCAAAC------CAAGCAGATCAATCCTCCGAA-------TC---TCTCCTTATCTAGCTAGG--TCGTA-------------------AGCCTCCAG-ACTAACCC----AT---TC------------A---A---------------------ACC--CAAACAG----ACC---AGACCTC-----C------------AGCTCATGCCACTCAT----CTCATT----------CTCATA--CAAATCT---GTACATAT-GTT-TACCGTTCA---ATC-----C-G-T----TC------------AA--GCCGTTCAAT----A------TAAC
droBip1 scf7180000395155:229343-229647 + GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTATGCCCCACCACCAACCTA------GTCAC--GAA----------------------------------------------------------CCGAATCTAGTCACTTCAGCCAAACCGATATCAACCAGATCAATCCTCCGAATCTCTTCCC---TAT------TTAGCTACA--T---------------AGGTCGTAAGCCTCCAG-ACTAACCT----CC--ATTC-----------A---GTACCCAGACAGCCAGACAGCCTCC--CCGACAG----ACCAGA---C-------------------------C---GT-CTCAT----CTCATT----------CTCATA--CAAATCT---GTACATAT-GTT-TACCGTTCA---ATC-----C-G-T----TC------------AA--GCCGTTCAATATATA------TAAC
dp5 XR_group6:12489881-12490168 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTA-----TAACCC-----AA------------------------------ACCA--------TA----A----CCAAAACAGAATAATCATCTGTAACTCTGAATCTAGTA----------------------------------------------------ACT------TTAGCCAGAATCCGTAGACT------------------CTCCAGAACTAACCACCCAGTAGA--AATC-C-----AATCAA---------------------TC---CCAAGA-----AACGACAGACGTA-----C-TCGTACTCCGTATCTCATGCCAATCAT----CACATT-----------TCATACACAGATCTGTTGTACATATTGTT-AACTGTTTCTA-AAA------GC-A------AACTACT-AATCGAAAGC----------------TGT-ATT
droPer2 scaffold_33:509129-509420 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTA-----TAACCC-----AA------------------------------ACCA--------TA----A----CCAAAACAGAATAATCATCTGTAACTCTGAATCTAGTA----------------------------------------------------ACT------TTAGCCAGAATCCGTAGACT------------------CTCCAGAACTAACCACCCAGAAGA--AATC-C-----AAGCAA---------------------TC---CCAAGA-----AACGACAGACGTA-----CTTCGTACTCCGTATCTCATGCCAATCAT----CACATT-----------TCATACACAGATCTGTTGTACATATTGTT-AACTGTTTCTAAAAA------GA-A------AACTACTAAATCGAAAGC----------------TGTATTT
droWil2 scf2_1100000004729:2096786-2096839 - GACATTGATCAATGAGATACGCCAGGCGGTAAACGAAGCGCAGCCTAAAGGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10322:298771-299014 - dvi_592 GACGCTAATCAACGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAACTATTCA--A-------------------------------------AAAACAAATGACTTGCAAC------------------------------------CGGTT------------------TC-------------------------------------------AACGAGGAATCGTTGATAATCCTCTAA------------AAG-ACTAACTC------AAATTCTCTCT------C-------------------------CG---TT----------ATCAAAGACTTC-----TTTCATA---AG-----C---GCCATCGA----TTCATG--------TGCACATA--AAGACAT------TATAA-ATA-TATTGTTAT---ACATACAAAGC-T------AAT--AT-GATCAACTAC----------------TGTTGT-
droMoj3 scaffold_6680:2335628-2335694 - AACGCTGATCAATGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAAATA--A--------CAATC-------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:226368-226637 + GACGCTGATCAATGAGATTCGCCAGGCGGTCAACGAAGCGCAGCCAAAAGGTGAACTATTCA--A------------------------------------A-CATA-AAT-TCCCGCAAC------------------------------------CGGTT------------------ACAACAATTACGAGT----------------------------------------CGTAGATTATCTGCTAGAACTTGAACCAGAAC-ACTAACCA------AAATTCAACCC------A-------------------------CT---TCAAGAA--A-AAC-------TAT-----TATCGAA---AG-----CGACATCATCGT----TTCATG--------TGCACATA--AAAATAT---GT-TATAC-GTT-TCTTGTTTT---ACA-----TGC-C-----ATA---CT-GTTCTAATAG--C--CATATATATTACGATTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC---CA------------------------------ACCAAC------CA----A----CTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGATCCC------A---A---------------------TCC--CCAAGAG----AGCAAAATACGTA---------------------TCATGATCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCA---AAA------GA-CTTACTTAA---CT-AATCCAACAC----------------CGTTGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................TGACCATC---CA------------------------------ACCAAC------CA----A----CTAGAC.............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
..................CCGCCAGGCGGTGAACGAAGCACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
droSec2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC---TA------------------------------ACCAAC------CA----A----CTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGATCCC------A---A---------------------TCC--CCAAGAG----AGCAAAATACGTA---------------------TCATGATCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCA---ACA------GA-C----TTAA---CT-AATCCAACAC----------------CGTTGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................AGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGAT.................................................................................................................................................................................................................................2711.0010010
GACGCTGATCAACGAGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........CAACGAGATCCGCCAGGCGGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAT---C-----------------------------CAACCAAC------CA----A----CTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGAACCC------A---A---------------------TCC--CCAAGAG----AGCAAAAGACGTA---------------------TCATGATCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTTTTACTGTTCA---AAA------GA-CTTACTTAA---CT-AATCCAACAC----------------CGTTGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......GATCAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000001000
...................CGCCAGGCGGTGAACGAAGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCAGGCGGTGAACGAAGCACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGATCAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000
..........................CGGTGAACGAAGCACAGCCCAAAGGTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGTGAACGAAGCACAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.....TGATCAACGAGATCCGCCAGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATCAACGAGATCCGCCAGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................CGTAG----------------------------ACTAACCC----GTAGATCG...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................CAGGCGGTGAACGAAGCACAGCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..............AGATCCGCCAGGCGGTGAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCCAGGCGGTGAACGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCCGCCAGGCGGTGAACGAAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAACGAGATCCGCCAGGCGGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................AGGCGGTGAACGAAGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTTTTACTGTTCA---AAA------GA-CTTACTTAA---C...................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAACGAGATCCGCCAGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAACGAGATCCGCCAGGCGGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCAGGCGGTGAACGAAGCACAGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTGATCAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........CAACGAGATCCGCCAGGCGGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAGCACAGCCCAAAGGTGAACTATGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCCGCCAGGCGGTGAACGAAGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AAGACGTA---------------------TCATGATCATCAT----CT.....................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................ACGAAGCACAGCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CATA--CAGATCT---GTACATAT-GT..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AACGAAGCACAGCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droEre2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAATGAAGCACAGCCCAAAGGTGAACTATGACCAAC---CA------------------------------ACCAAC------CAACCAACCAACTAGACCA-------------------------------------------------------GCACAATCCTCCGAT-------TC---TCT------CTAGCCAGA--CCGTAG----------------------------ACTAACCC----GTAGATCGATCCC------A-------------------------CCC--CCAAAAG----AACAAAAGACGTA---------------------TCATGATCATCAT----CGCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCC---AAA------GA-C----TTAA---CT-AATCCAACAC----------------CGTTATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....TGATCAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000002
.........CAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
................................ATGAAGCACAGCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............................................................CAAC---CA------------------------------ACCAAC------CAACCAACCAACT.................................................................................................................................................................................................................................................................................................................................................................................................2560.1711000000
......................................................................A------------------------------ACCAAC------CAACCAACCAACT.................................................................................................................................................................................................................................................................................................................................................................................................2080.1310100000
...............................................................AAC---CA------------------------------ACCAAC------CAACCAACC.....................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
droYak3
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC---CA------------------------------ACCAAC------CA----A----C-AGACCA-------------------------------------------------------GCACAATCCTCCGAT-CTCCAATC---TCT------CTAGCCCGA--CTGTAG----------------------------ACTAACCC----GTAGATCGATCCC------AACCA---------------------CCC--CCAAAAAAAAAAACGAAAGACGTA---------------------TCATGATCATCAT----ATCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTGA---AAA------AATC----TTAA---CT-AATTCAACAC----------------CGTTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............GATCCGCCAGGCGGTGAACGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.0020000000000020
.....TGATCAACGAGATCCGCCAGGCGGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28116.0016000000000016
..........AACGAGATCCGCCAGGCGGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.00400000000004
......GATCAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
........TCAACGAGATCCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......GATCAACGAGATCCGCCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
droEug1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTATGACCAAC---CA------------------------------ACCAAC------CAACCAA----CCAGACCA-------------------------------------------------------GCACAATCCTCCGAA-------TC---TCT------CTAGCCAGA--CCGTAG----------------------------ACTAACCA----CTAGAACGATCCC------A----------------------------------------------CAGACGTA---------------------TCATGCCCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCC---AAA-----AGC-C------AA---CT-AATCGAACAC----------------TGTTATTSizeHit CountTotal NormTotal
No Reads
droBia1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCTAC---CA------------------------------ACCAAC------CA----A----CCAGACCA-------------------------------------------------------GCACAATCCTTCGAA-------TC---TCT------C-AGCCAGA--ACGTAG----------------------------ACTAACCA----GTAGATCGATCCT------AT--A---------------------CCCCCCAAAAAGAAAAACCGAAAGACATA---------------------TCATGCCCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCA---AAA------GC-C------AA---CT-AATCGAACAC----------------TGTTATTSizeHit CountTotal NormTotal
No Reads
droTak1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAC---CA------------------------------ACCAAC------CA----A----CCAGACCA-------------------------------------------------------GCACAATCCTCCGAATCTT---TC---TCT------TTAGCCAGA--ACGTAG----------------------------ACTAACCA--TAGTAGTTCGAACCTTTTCCCAACGA---------------------TCC--CCGAAAA----AACGAAAGACCTA-----C------------ATATCATGCCCATCAT----CTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTCT---AAA------GG-CCTA-AAAA---CT-AATCGAACAC----------------TGTTATTSizeHit CountTotal NormTotal
No Reads
droEle1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTATGACCTATGACCAACCA--------------------------ATCAAC------CAACCAACCA-------------------------------ATCAAGC------AACCAAAC------AAACCAGCACAATCCTCCGAA-------TC---TCT------CTAGCCAGA--CCGTAGAAT------------------------AACTAACCT----TTAGATTGAACCC------A---A---------------------TCC--CGA--------AACGAAAAACATA---------------------TCATGCCCGTCATCCAACTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTTCA--AAA-----AGT-C----AAAA---CT-AATCGAACAC----------C-----TGTTATTSizeHit CountTotal NormTotal
No Reads
droFic1
GACGCTGATCAACGAAATCCGCCAGGCGGTGAACGAAGCGCAGCCCAAAGGTGAACTATGCCCCAC---CAACCAAAACCCAGAAACCAAAAACGAATCCAACC------------------------------------------------------------------------------AACAAGCACAATCCTCCGAA-------TCGAATCT------CTAGCAAGA--CCGTAG----------------------------ACTAACCC----GTAGATCAATC------------------------------------------------------------GATCAATCAATCAAC---CG-----C---ACCATCAC----CTCATT-----------CCATA--CAGATCT---GTACATAC-GTT-TACTGTTCA---A-A------GA--------------T-AATCGAAC-C----------------TGTTATTSizeHit CountTotal NormTotal
No Reads
droKik1
GACGCTGATCAATGAGATCCGCCAGGCGGTGAACGAAGCCCAGCCCAAAGGTGAACTATGACCAAC---CA-----------------------------AATCAAA------CCACCAACCA---ATGCCA-------------------------------------------------------GCACAAACCTCCGAATCTC---TC---TCT------CTAGCCAAAATC---------------AGGCCGTA-G----TAG-ACTAACCC--CAGTAGA--------------------------------------------------------AAC-------GA----------------------TC---ATCATCAT----CTCATTACTCCACAC--TCTCA--CAGAACT---GTACATAT-GTTTATCTGTTTG---GAA------GC-CCAA-AAAA---CT-AATCAAACA-----------------TATTATTSizeHit CountTotal NormTotal
No Reads
droAna3
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTATGCCCCAC---CAACCTA------GTCAC--GCA----------------------------------------------------------CCGAATCTAGTCACTT-AATCAAAC------CAAGCAGATCAATCCTCCGAA-------TC---TCTCCTTATCTAGCTAGG--TCGTA-------------------AGCCTCCAG-ACTAACCC----AT---TC------------A---A---------------------ACC--CAAACAG----ACC---AGACCTC-----C------------AGCTCATGCCACTCAT----CTCATT----------CTCATA--CAAATCT---GTACATAT-GTT-TACCGTTCA---ATC-----C-G-T----TC------------AA--GCCGTTCAAT----A------TAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............GATCCGCCAGGCGGTGAACGAGGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
......GATCAACGAGATCCGCCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................AG-ACTAACCC----AT---TC------------A---A---------------------ACC--CAAAC................................................................................................................................................................................2411.001010000
droBip1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTATGCCCCACCACCAACCTA------GTCAC--GAA----------------------------------------------------------CCGAATCTAGTCACTTCAGCCAAACCGATATCAACCAGATCAATCCTCCGAATCTCTTCCC---TAT------TTAGCTACA--T---------------AGGTCGTAAGCCTCCAG-ACTAACCT----CC--ATTC-----------A---GTACCCAGACAGCCAGACAGCCTCC--CCGACAG----ACCAGA---C-------------------------C---GT-CTCAT----CTCATT----------CTCATA--CAAATCT---GTACATAT-GTT-TACCGTTCA---ATC-----C-G-T----TC------------AA--GCCGTTCAATATATA------TAACSizeHit CountTotal NormTotal
No Reads
dp5
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTA-----TAACCC-----AA------------------------------ACCA--------TA----A----CCAAAACAGAATAATCATCTGTAACTCTGAATCTAGTA----------------------------------------------------ACT------TTAGCCAGAATCCGTAGACT------------------CTCCAGAACTAACCACCCAGTAGA--AATC-C-----AATCAA---------------------TC---CCAAGA-----AACGACAGACGTA-----C-TCGTACTCCGTATCTCATGCCAATCAT----CACATT-----------TCATACACAGATCTGTTGTACATATTGTT-AACTGTTTCTA-AAA------GC-A------AACTACT-AATCGAAAGC----------------TGT-ATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........CAACGAGATCCGCCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
droPer2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTA-----TAACCC-----AA------------------------------ACCA--------TA----A----CCAAAACAGAATAATCATCTGTAACTCTGAATCTAGTA----------------------------------------------------ACT------TTAGCCAGAATCCGTAGACT------------------CTCCAGAACTAACCACCCAGAAGA--AATC-C-----AAGCAA---------------------TC---CCAAGA-----AACGACAGACGTA-----CTTCGTACTCCGTATCTCATGCCAATCAT----CACATT-----------TCATACACAGATCTGTTGTACATATTGTT-AACTGTTTCTAAAAA------GA-A------AACTACTAAATCGAAAGC----------------TGTATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GACATTGATCAATGAGATACGCCAGGCGGTAAACGAAGCGCAGCCTAAAGGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................AACGAAGCGCAGCCTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
...............................AACGAAGCGCAGCCTAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................TAAACGAAGCGCAGCCTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
droVir3
GACGCTAATCAACGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAACTATTCA--A-------------------------------------AAAACAAATGACTTGCAAC------------------------------------CGGTT------------------TC-------------------------------------------AACGAGGAATCGTTGATAATCCTCTAA------------AAG-ACTAACTC------AAATTCTCTCT------C-------------------------CG---TT----------ATCAAAGACTTC-----TTTCATA---AG-----C---GCCATCGA----TTCATG--------TGCACATA--AAGACAT------TATAA-ATA-TATTGTTAT---ACATACAAAGC-T------AAT--AT-GATCAACTAC----------------TGTTGT-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--AT-GATCAACTAC----------------TGTTGT-2114.004000000000000000100000000001000000000001000000000000000000000010
...................................................................................................................................................................................................................................CGAGGAATCGTTGATAATCCT.......................................................................................................................................................................................................................................................................2112.002000000000000000000000000011000000000000000000000000000000000000
................................ATGAAGCACAGCCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000010000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AAGACTTC-----TTTCATA---AG-----C---GCC................................................................................................................................2112.002000000000000000000000000010000010000000000000000000000000000000
........................................................................................................AACAAATGACTTGCAAC------------------------------------CGGT..............................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000200000000000000000000000000000000000000
.......................................................................................................AAACAAATGACTTGCAAC------------------------------------CGG...............................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000001000010000000000000000000000000000000
..........AACGAGATTCGCCAGGCGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000001000000000000100000000000000000000000000000000000000
................................................................................................................ACTTGCAAC------------------------------------CGGTT------------------TC-------------------------------------------AACGA.........................................................................................................................................................................................................................................................................................2112.002000000000000000000000000110000000000000000000000000000000000000
...........ACGAGATTCGCCAGGCGGTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000002000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AAAGACTTC-----TTTCATA---AG-----C---GC.................................................................................................................................2112.002001000000000000000000001000000000000000000000000000000000000000
.ACGCTAATCAACGAGATTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.........CAACGAGATTCGCCAGGCGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
.ACGCTAATCAACGAGATTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CATA---AG-----C---GCCATCGA----TTCATG--------.........................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TA---AG-----C---GCCATCGA----TTCATG--------TGC......................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................CAGGCGGTCAATGAAGCACAGCCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
........TCAACGAGATTCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
GACGCTAATCAACGAGATTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TCTCTCT------C-------------------------CG---TT----------ATCAAAGACTTC-----T.......................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
...........ACGAGATTCGCCAGGCGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTCATG--------TGCACATA--AAGACAT------..................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TA---AG-----C---GCCATCGA----TTCATG--------TG.......................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TCT------C-------------------------CG---TT----------ATCAAAGACTTC-----T.......................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CTC------AAATTCTCTCT------C-------------------------CG---TT----------ATC......................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................AACAAATGACTTGCAAC------------------------------------CGG...............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................TAATCCTCTAA------------AAG-ACTAACT............................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........CAACGAGATTCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
...................CGCCAGGCGGTCAATGAAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AAT--AT-GATCAACTAC----------------TGTTG..2111.001000000000000000000000000010000000000000000000000000000000000000
........TCAACGAGATTCGCCAGGCGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
.........................GCGGTCAATGAAGCACAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.................................TGAAGCACAGCCAAAAGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CCATCGA----TTCATG--------TGCACATG--...............................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.........CAACGAGATTCGCCAGGCGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CGTTGATAATCCTCTAA------------AA.....................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................AAATGACTTGCAAC------------------------------------CGGTT------------------TC-------------------------------------------..............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTC-----TTTCATA---AG-----C---GCCATCGA----TTCATG--------.........................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
................................ATGAAGCACAGCCAAAAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................TGCAAC------------------------------------CGGTT------------------TC-------------------------------------------AACGAGGA......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TC------AAATTCTCTCT------C-------------------------CG---TT----------ATC......................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................CAATGAAGCACAGCCAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
......AATCAACGAGATTCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000001000000000000000000000000000000000000000000000000000
..........AACGAGATTCGCCAGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................CTTGCAAC------------------------------------CGGTT------------------TC-------------------------------------------AACGAG........................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............CGAGATTCGCCAGGCGGTCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................CAAATGACTTGCAAC------------------------------------CGGTT------------------TC-------------------------------------------..............................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................AAAACAAATGACTTGCAAC------------------------------------CG................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.......ATCAACGAGATTCGCCAGGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCATA---AG-----C---GCCATCGA----TTCATG--------.........................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AACTC------AAATTCTCTCT------C-------------------------CG---TT----------.........................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TC------AAATTCTCTCT------C-------------------------CG---TT----------ATCA.....................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.................TTCGCCAGGCGGTCAATGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---ACATACAAAGC-T------AAT--AT-G................................2011.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
AACGCTGATCAATGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAAATA--A--------CAATC-------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................GTCAATGAAGCACAGCCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
GACGCTGATCAATGAGATTCGCCAGGCGGTCAACGAAGCGCAGCCAAAAGGTGAACTATTCA--A------------------------------------A-CATA-AAT-TCCCGCAAC------------------------------------CGGTT------------------ACAACAATTACGAGT----------------------------------------CGTAGATTATCTGCTAGAACTTGAACCAGAAC-ACTAACCA------AAATTCAACCC------A-------------------------CT---TCAAGAA--A-AAC-------TAT-----TATCGAA---AG-----CGACATCATCGT----TTCATG--------TGCACATA--AAAATAT---GT-TATAC-GTT-TCTTGTTTT---ACA-----TGC-C-----ATA---CT-GTTCTAATAG--C--CATATATATTACGATTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................GGTCAACGAAGCGCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110

Generated: 05/19/2015 at 01:51 PM