ID:

dsi_28361

Coordinate:

3l:7324973-7325122 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

TGATCTTTGTTTATGTAGCAATCGTCGTGGTGAAACTGATAATTCTGTTCGTGTGCATAAGTACTGAATTGAATCCTGACAAGACGGCAGCTCATCCCATATTTATGGTTTGCTGGCTCCTTACGGTATGGTTATACATATATAAATTATTAATTATATAAATATATCTTACCCAAGTTTTTCTGCCAACTGAATAGTTCTTATGTATGGCCGCTATAATACTATACTGGCTTCGGCTACATGACCTTGC ************************************************..((((....))))...........(((...((..(((((..((..((((....))))..)).......(((..((((.(((.(((..(((((((........)))))))..)))))).)))).))).....)))))..))...)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	O001 Testis	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
..........TTATGTAGCAATCGTCGTGTT...........................................................................................................................................................................................................................	21	1	1	3.00	3	3	0	0	0	0	0	0
..............GTAGCAATCGTCGTGTTGAA........................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0
..ATCTTTGTTTATGTAGCAA.....................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
...................................................................ATTGAATCCTGACAAGACGGCAA................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
.............................................TGTTCGTGTGCATAAGTACTG........................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0
.........TTTATGTAGCAATCGTCGTG.............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................TAAAGATATCTGACCGAAGTTTT.....................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0
...........................................TCTGTTCGTGTGCATAGGT............................................................................................................................................................................................	19	1	3	0.33	1	0	0	0	0	1	0	0
.....................CCGTCGTGGTGAAATTGGTA.................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0
.......................GTCGTGGTGAAATTGGTA.................................................................................................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0	0
........................TCGTGGTGAAACTGG...................................................................................................................................................................................................................	15	1	11	0.09	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................TGTATGGACGGTATAA...............................	16	2	20	0.05	1	0	0	0	1	0	0	0
...........................TGGCGAAAGTGGTAATTCT............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
.................................TACTGATTATTCTGTTCTT......................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0

Anti-sense strand reads

ACTAGAAACAAATACATCGTTAGCAGCACCACTTTGACTATTAAGACAAGCACACGTATTCATGACTTAACTTAGGACTGTTCTGCCGTCGAGTAGGGTATAAATACCAAACGACCGAGGAATGCCATACCAATATGTATATATTTAATAATTAATATATTTATATAGAATGGGTTCAAAAAGACGGTTGACTTATCAAGAATACATACCGGCGATATTATGATATGACCGAAGCCGATGTACTGGAACG ************************************************..((((....))))...........(((...((..(((((..((..((((....))))..)).......(((..((((.(((.(((..(((((((........)))))))..)))))).)))).))).....)))))..))...)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553488 RT_0-2 hours eggs
................................................AGCACACATATTCATGGCTCA.....................................................................................................................................................................................	21	3	3	0.33	1	1	0
.......................................................................................GTCGAGTAGGGGATTAA..................................................................................................................................................	17	2	19	0.05	1	0	1

Generated: 04/24/2015 at 05:06 AM