ID:

dsi_28360

 Coordinate:

2r:5782762-5782911 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.7 -16.7 -16.6

Flybase annnotation

Antisense to intron [2r_5782820_5782875_-]; Antisense to exon [2r_5782876_5783008_-]; Antisense to CDS [2r_5782876_5783008_-]; Antisense to exon [2r_5782519_5782819_-]; Antisense to CDS [2r_5782519_5782819_-]; three_prime_UTR [2r_5782529_5782872_+]; exon [2r_5782529_5782872_+]

No Repeatable elements found

Sense Strand Reads

#################################################################################################################################################################-----------------------------------------------------------------------------------------
TGGCTTGGATTTGTGGAAAACATGGCATAAGAATTATTGCACTTATGCCAGTAAGCTATAGCCTCTTTTATGCCACGATCTGTCCAGCACTTGTTAGCCTCTTTTAGCCTAAAAACATTGAGTAGTTAAATAAATTGTAAAATGTATGATTTATAGTTACTAACCGAAAGCACAGCATGAGAATATCCGCACACACTTGCGATGTAATAAAATCCTTTTGAAATATGCCGGCACAGAAATACCTATGTAG
**************************************************(((((.....((...((((((((.((((..(((...))).))))..((........)).........(((..((((...((((((((((.....))))))))))....))))..))).......))))))))......)).....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
.....................ATGGCATAAGAATTATTGCAC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
..........TTGTGGAAAACATGGCATAA............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
........ATTTGTGGAAAACATGGCATT............................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................TGAGAATATCCGCACACACTT.................................................... 21 0 1 1.00 1 0 1 0 0 0
..............................GAATTATTGCACTTATGCCAG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
........ATTTGTGGAAAACATGGCAT.............................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
.......GATTTGTGGAAAACATGGCAA.............................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..GCTTGGATTTGTGGAAAACAT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................CAGAATGAGAATATTGGCAC.......................................................... 20 3 13 0.31 4 0 0 3 1 0
........ATTTGTGGAAAACATGGCAGTT............................................................................................................................................................................................................................ 22 3 7 0.14 1 1 0 0 0 0
.......................................GACTTATGCCAGGAACCTA................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 1

Anti-sense strand reads

############################################################################################################--------------------------------------------------------######################################################################################
ACCGAACCTAAACACCTTTTGTACCGTATTCTTAATAACGTGAATACGGTCATTCGATATCGGAGAAAATACGGTGCTAGACAGGTCGTGAACAATCGGAGAAAATCGGATTTTTGTAACTCATCAATTTATTTAACATTTTACATACTAAATATCAATGATTGGCTTTCGTGTCGTACTCTTATAGGCGTGTGTGAACGCTACATTATTTTAGGAAAACTTTATACGGCCGTGTCTTTATGGATACATC
**************************************************(((((.....((...((((((((.((((..(((...))).))))..((........)).........(((..((((...((((((((((.....))))))))))....))))..))).......))))))))......)).....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
.......................................................................CGGTGCTAGACAGGTCGTGAACAAT.......................................................................................................................................................... 25 0 1 7.00 7 2 2 2 1 0 0 0 0 0 0
......................................................................ACGGTGCTAGACAGGTCGTGAACAAT.......................................................................................................................................................... 26 0 1 5.00 5 0 4 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGGAAAACTTTATACGGCCGTGTCTTT........... 27 0 1 5.00 5 0 2 2 0 0 0 0 1 0 0
....................................................................ATACGGTGCTAGACAGGTCGT................................................................................................................................................................. 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..............................................................GAGAAAATACGGTGCTAGACA....................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
................................................................GAAAATACGGTGCTAGACAGG..................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
............................................................CGGAGAAAATACGGTGCTAGACAGGT.................................................................................................................................................................... 26 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AGGAAAACTTTATACGGCCGTGTCTTTAT......... 29 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
..........................................................ATCGGAGAAAATACGGTGCTAGACAGGT.................................................................................................................................................................... 28 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
...................................................................AATACGGTGCTAGACAGGTC................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGGAAAACTTTATACGGCCGTGTCT............. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................TACGGTCATTCGATATCGGAG......................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................AATAAAATACGGTGCTAGACAG...................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGGCGTGTGTGAACGCTACATTAT......................................... 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATAGGCGTGTGTGAACGCTACATTAT......................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................CAGGTCGTGAACAATCGGAGA.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................AGAAAATACGGTGCTAGACAGGTCGT................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAATCGGCTTTCGTGTCGTACTCT.................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............CACCTTTTGTACCGTATTCTT......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................TTAAATACGGTGCTAGACAGG..................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACGCTACATTATTTTAGGAAA................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................TCGTGTCGTACTCTTATAGGCGTGTGT....................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................AGACAGGTCGTGAACAATCGGAGAAAAT................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................AAAAAACGGTGCTAGACAGG..................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAGACAGGTCGTGAACAATC......................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGTGCTAGACAGGTCGT................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................GCTAGACAGGTCGTGAACAA........................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................AACGGTGCTAGACAGGTCGT................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................TGCTAGACAGGTCGTGAACAAT.......................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................AAATACGGTGCTAGACAGGTC................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................ATACGGTGCTAGACAGGTC................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................TTTACGGTCATTCGATATCGGA.......................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................ACGGTGCTAGACAGGTCGTGA............................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TACGGTGCTAGACAGGTCGTG................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................TCGATATCGGAGAAAATACGGTGCT............................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................AATACGGTGCAGGAGAGGTCGT................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CATAATTTCAGGAAACCTTTAT......................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
...................................................................TTAACGGTGCTAGACAGGTCG.................................................................................................................................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGACTGGCTTTCGTG............................................................................. 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................GTGCAAAATCGGAGAAAGTC............................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................ATAAGGTCGTGTCTTTAT......... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
...................TGGACCGCACTCTTAATAA.................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TTGCTTTGGTGTCGTAC....................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 10:36 PM