ID:

dsi_2835

 Coordinate:

3l:7486203-7486352 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.4 -34.2 -34.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAACAGAAGAGCCAGTTGCCGGTAAATTGGCAGCCGAAATAGCCAACTATGTGAGTCAGCTGAGCAACTGACTTCGATCGGGCACAGTAATATAGCAATCGTATCGGCGCTATTAATAGTTCACAGTTCAGTTGATCAGCCCACATGTCCTCTTATCGGCATCGGTTTTAGCAGTGAAAATCAACTTGGGGCCGAGTTTTACTAAATCAATTAATTAATTTATGGCCAGCCTGTGCGGCGGGGCAATCGT
**************************************************..(((((((........)))))))((((...((...........)).))))..(((((.(((.......(((((......(((((..((((...(((((........))))).))))))))).)))))........))).))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
.............................................................GAGCGACTGATTTCGAACGGG........................................................................................................................................................................ 21 3 3 2.67 8 8 0 0 0 0 0 0
......................................................................................................................................................TGTGATCGGCATCGGTTTTA................................................................................ 20 2 1 2.00 2 0 2 0 0 0 0 0
..............................................................AGCGACTGATTTCGAACGGG........................................................................................................................................................................ 20 3 4 1.75 7 7 0 0 0 0 0 0
.............................................................GAGCGACTGATTTCGAACGG......................................................................................................................................................................... 20 3 8 1.25 10 10 0 0 0 0 0 0
........................................................................TTCGATCGGGCACAGTAATATAGC.......................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................GCACACATGTCCTCTGATCGGCACC....................................................................................... 25 3 1 1.00 1 0 0 1 0 0 0 0
...............................................................GCGACTGATTTCGAACGGG........................................................................................................................................................................ 19 3 14 0.93 13 13 0 0 0 0 0 0
.............................................................GAGCGACTGATTTCGAACG.......................................................................................................................................................................... 19 3 18 0.72 13 13 0 0 0 0 0 0
...................................................................................................................................................TCCTCTGATCGGCACCTGTTTT................................................................................. 22 3 6 0.33 2 0 0 0 0 1 1 0
....................................................................................................................................................................................................TTTTACTGTATCAATTAATT.................................. 20 2 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................TGTGATCGGCATCGGTTTT................................................................................. 19 2 4 0.25 1 0 1 0 0 0 0 0
..............................................................AGCTACTGATTTCGAACGGG........................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0
.....................................................................................AGTTACATAGCAATCGTA................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................................GTCCTCTTCTCGGCA......................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0
............................................................................................................................AGTTCCGTCGATCGGCCCA........................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0
........................AATTTGGAGCCGAAATAGCT.............................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 1 0 0 0 0
.....................................................................................................................................................................GTTTAGCAGTGAAGATC.................................................................... 17 2 14 0.07 1 0 0 1 0 0 0 0
..........................CTGGCGGCCGAAATAGC............................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 1 0 0 0 0
......................................................................................................................GTTCACTGTTGAGCTGATC................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 1
......................................................................................................................................................TGTGATCGGCATCGATTTTA................................................................................ 20 3 19 0.05 1 1 0 0 0 0 0 0
......................................................GTCGGTAGAGCAACTGACT................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................TACACAGTTAAGTTGAT.................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

TTTGTCTTCTCGGTCAACGGCCATTTAACCGTCGGCTTTATCGGTTGATACACTCAGTCGACTCGTTGACTGAAGCTAGCCCGTGTCATTATATCGTTAGCATAGCCGCGATAATTATCAAGTGTCAAGTCAACTAGTCGGGTGTACAGGAGAATAGCCGTAGCCAAAATCGTCACTTTTAGTTGAACCCCGGCTCAAAATGATTTAGTTAATTAATTAAATACCGGTCGGACACGCCGCCCCGTTAGCA
**************************************************..(((((((........)))))))((((...((...........)).))))..(((((.(((.......(((((......(((((..((((...(((((........))))).))))))))).)))))........))).))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................CCGGCTCAAAATGATTTAGT......................................... 20 0 1 1.00 1 0 1 0 0 0 0
............................CTGTCGGCATTATCGTTTGATA........................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
...........................ACCGGCGGCTTTATCGG.............................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 1 0 0 0
.........GCGGTCCACGGCCATTT................................................................................................................................................................................................................................ 17 2 12 0.17 2 1 0 0 0 0 1
................................................................GGTGACTGAGGCTAGACCGT...................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0
................................CGGCTTAATCGGTTGGTAA....................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 0 3 0
...............................TCGGGTTTATCGGTTGATGT....................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 10:18 AM