ID:

dsi_28343

 Coordinate:

x:1932992-1933141 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -9.5 -9.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAAAGCGGTACGGCTCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGATCAAATGAAACGCATATCAAGTGCTGACCAGGGCTTATGCATAGTACTAAGAAACTTACCAGGTGTGCTGGTGCTGCAGTTGTCATTGCAGTTGTACAAGTGTGTCCCTCCTCTCCTCGAATATGATCTCTCTCAGCTTGTGTGTGTGTCTAAGGAGGGCTAACTTAGTCCGTGCGACGCGTATAA
***********************************************************................(((((((.(((((((..((.......))..))))))).............)))))))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 O002
Head
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
.........................................................................................................TAGTACTAAGAAACTTACCAGGTGTGC...................................................................................................................... 27 0 1 27.00 27 19 7 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTCTCAGCTTGTGTGTG........................................ 25 0 1 23.00 23 13 8 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTCTCAGCTTGTGTGTGT....................................... 26 0 1 10.00 10 3 7 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAGAAACTTACCAGGTG......................................................................................................................... 24 0 1 10.00 10 6 3 1 0 0 0 0 0 0 0 0
..................TTCGCCAGAGCAACAACGTGTCCCAGA............................................................................................................................................................................................................. 27 0 1 8.00 8 4 4 0 0 0 0 0 0 0 0 0
........................................................................................TGACCAGGGCTTATGCATAGTACTAAGA...................................................................................................................................... 28 0 1 8.00 8 6 1 1 0 0 0 0 0 0 0 0
......................................TCCCAGAGTCAGGTGAGCTTATGAGA.......................................................................................................................................................................................... 26 0 1 7.00 7 5 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCTCTCAGCTTGTGTGTGTGTCTAAGGA.............................. 28 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGAATATGATCTCTCTCAGCTTGTGTG.......................................... 28 0 1 6.00 6 3 3 0 0 0 0 0 0 0 0 0
...........................................................TGAGATCAAATGAAACGCATATCAAG..................................................................................................................................................................... 26 0 1 5.00 5 2 2 1 0 0 0 0 0 0 0 0
TAAAGCGGTACGGCTCCCTTCGCCAGA............................................................................................................................................................................................................................... 27 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0
....................................TGTCCCAGAGTCAGGTGAGCTTATGAGA.......................................................................................................................................................................................... 28 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTCTCAGCTTGTGTGTGTG...................................... 27 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0
............................................................................................CAGGGCTTATGCATAGTACTAAGAAACT.................................................................................................................................. 28 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.....................................................................TGAAACGCATATCAAGTGCTGACCAGGG......................................................................................................................................................... 28 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0
...................................................TGAGCTTATGAGATCAAATGAAACGCA............................................................................................................................................................................ 27 0 1 5.00 5 1 3 0 0 0 0 0 1 0 0 0
....................................TGTCCCAGAGTCAGGTGAGCTTATGA............................................................................................................................................................................................ 26 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TAACTTAGTCCGTGCGACGCGTATA. 25 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCATAGTACTAAGAAACTTACCAGG........................................................................................................................... 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
........................AGAGCAACAACGTGTCCCAGAGTCAGG....................................................................................................................................................................................................... 27 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCCTCGAATATGATCTCTCTCAGCT................................................ 25 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATATGATCTCTCTCAGCTTGTGTGTG........................................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................TACTAAGAAACTTACCAGGTGTGCTGG................................................................................................................... 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGAATATGATCTCTCTCAGCTTGTG............................................ 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
.............................................GTCAGGTGAGCTTATGAGATCAAATGA.................................................................................................................................................................................. 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGCTTGTGTGTGTGTCTAAGGA.............................. 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTCTCAGCTTGTGTGT......................................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCTCAGCTTGTGTGTGTGTCTAAGGA.............................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGATCTCTCTCAGCTTGTGTGTG........................................ 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGTCATTGCAGTTGTACAAGTGTGTC................................................................................ 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
...............................................CAGGTGAGCTTATGAGATCAAATGAAA................................................................................................................................................................................ 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................................GGTGAGCTTATGAGATCAAATGAAACGCA............................................................................................................................................................................ 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAAGGAGGGCTAACTTAGTCCGTGCGA......... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
........................................................................AACGCATATCAAGTGCTGACCAGGGCT....................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGGCTAACTTAGTCCGTGCGACGCGTA... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAGAAACTTACCAGGTGTGCT..................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TGACCAGGGCTTATGCATAGT............................................................................................................................................. 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TCCTCGAATATGATCTCTCTCAGCTTG.............................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGTACAAGTGTGTCCCTCCTCTCCTCGA.................................................................. 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGAGGGCTAACTTAGTCCGTGCGACGCG..... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAATATGATCTCTCTCAGC................................................. 19 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
................................................AGGTGAGCTTATGAGATCAAATGAAAA............................................................................................................................................................................... 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................TGTCCCAGAGTCAGGTGAGCTTATGAG........................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTCCTCGAATATGATCTCTCTCAGC................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.............................................GTCAGGTGAGCTTATGAGATCAAATG................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CTCTCAGCTTGTGTGTGTGTCTAAGG............................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGAATATGATCTCTCTCAGCTTGTGT........................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGATCTCTCTCAGCTTGTGTGTGT....................................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TGACCAGGGCTTATGCATAGTACT.......................................................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGAATATGATCTCTCTCAGCTTGTGTG.......................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
....................................TGTCCCAGAGTCAGGTGAGCTTAAA............................................................................................................................................................................................. 25 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................TGAAACGCATATCAAGTGCTGACCAGG.......................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTCGAATATGATCTCTCTCAGCTTGTGTG.......................................... 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................ATAGTACTAAGAAACTTACCAGGTGTGC...................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
..............TCCCTTCGCCAGAGCAACAACGTGTC.................................................................................................................................................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CGAAGAACCTTACCAGGT.......................................................................................................................... 18 2 3 1.67 5 2 0 0 2 0 0 0 0 1 0 0
..........................................................ATGAGATCAAATGAAACGCAT........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAGAAACTTACCAGG........................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................TTCGCCAGAGCAACAGCGTGTCCCAGA............................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TGAAACGCATATCAAGTGCTGACCAGGGC........................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCCTCTCCTCGAATATGATCTCTCTC.................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................GAGTCAGGTGAGCTTATGAGATCAAA..................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGAATATGATCTCTCTCAGCT................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTCTTAGCTTGTGTGTG........................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................AGAGCAACAACGTGTCCCAGAGTCAG........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
TAAAGCGGTACGGCTCCCTTCGCCAG................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CTAAGAAACTTACCAGGTGTG....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CTAAGAAACTTACCAGGTGTGCTGG................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGCTCCTCGAATATGATCTCTCTCAGCT................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCTCTCAGCTTGTGTGTGTGTCTAAG................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................GCAACAACGTGTCCCAGA............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................TGTCCCAGAGTCAGGTGAGCTTATG............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGATCTCTCTCAGCTTGTGT........................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAAGGAGGGCTAACTTAGTCCGTGC........... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGAATATGATCTCTCTCAGCTTGTGTGTGT....................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................GCAACAACGTGTCCCAGAGTCAGGAG..................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAAGGAGGGCTAACTTAGTCCGTGCGACGC...... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TGCGGTTGTCATTGCAGTTGTACAAGT..................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGCTTGTGTGTGTGTCTAAGGAGGGC.......................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TCATTGCAGTTGTACAAGTGTGTCCC.............................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGACCAGGGCTTATGCATAGTACTA......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGAATATGATCTCTCTCAGCTTGTGTGTG........................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TTCGCCAGAGCAACAACGTGTCCCAGAGT........................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAATATGATCTCTCTCAGCTTGTGTG.......................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TGCAGTTGTCATTGCAGTTGTACAAG...................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGATCTCTCTCAGCTTGTGTGTGTGT..................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TATCAAGTGCTGACCAGGGCTTATGC.................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................ACCAGGGCTTATGCATAGTACTAAGA...................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAGAAACTTACCAGGTGT........................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................CCCAGAGTCAGGTGAGCTTATGAGA.......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTGAGCTTATGAGATCAAA..................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAGAAACTTCCCAGGTGTG....................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................TATGCATAGTACTAAGAAACTTACCAGGA.......................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................TACTAAGAAACTTACCAGGTGTG....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTCTCAGCTTGTGTGTGTGT..................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TATGCATAGTACTAAGAAACT.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAAGGAGGGCTAACTTAGTCCGTGCGACGCG..... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACAAGTGTGTCCCTCCTCTCCTCGAA................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................TCAAGTGCTGACCAGGGCTTATGCATAG.............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................AGCAACAACGTGTCCCAGAGTCAGG....................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
TAAAGCGGTACGGCTCCCTTCGCCCGA............................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................TCAGGTGAGCTTATGAGATCAAATG................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGACCAGGGCTTATGCATAGTACTAAGAAA.................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AGGGCTTATGCATAGTACTAAGAAACT.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TCTCTCGAATATGATCTCTCTCAGC................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCTTGTGTGTGTGTCTAAGG............................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TATGCATAGTACTAAGAAACTTACCAGG........................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGTCATTGCAGTTGTACAAGTGTGTCC............................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCATAGTACTAAGAAACTTACCAGGTG......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TAAGAAACTTACCAGGTGTGCTGG................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCTCTCTCAGCTTGTGTGTGTGTC.................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCCTCTCCTCGAATATGATCTCTCTCAGC................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGCACTAAGAAACTTACCAGGTGT........................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCTCTCAGCTTGTGTGTGTGTCTA.................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................CAACAACGTGTCCCA............................................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TTCGCCAGAGCAACAACGTGTCCC................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................GCAACAACGTGTCCCAGAGTCAGGTGA.................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................GTCCCAGAGTCAGGTGAGCTTATGAGA.......................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................TGTCCCAGAGTCAGGGGAGCTTAA.............................................................................................................................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................GGCTTATGCATAGTACTAAGAAACT.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................AGGTGAGCTTATGAGATCAAATGAAACGCA............................................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTGAGCTTATGAGATCA....................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGATCTCTTTCAGCTTGTGTG.......................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................CAGGGCTTATGCATAGTACTAAGAAAC................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTCCTCGAATATGATCTCTCTCAGC................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TAAGAAACTTACCAGGTGTGCTGGTG................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGACCAGGGCTTATGCATAGTACTGAGA...................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTATGCATAGTACTAAGAAACTTACC.............................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TAAGAAACTTACCAGGTGTGCTGGTGC................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................TCAGGTGAGCTTATGAGATCAAATGA.................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAGAAACTTACCAGGTGTG....................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................CAGAGCAACAACGTGTCCCA............................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGTCATTGCAGTTGTACAAGTGTGTCCC.............................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................TCCCAGAGTCAGGTGAGCTTATGA............................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......GGTACGGCTCCCTTCGCC.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................AGTACTAAGAAACTTACCAGGTGTGC...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................TGAGATCAAATGAAACGCATATCAA...................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................CGTGTCCCAGAGTCAGGTGAGCTTA............................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TAAGAAACTTACCAGGTGTGCTG.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTGTCCCTCCTCTCCTCGAATATGA............................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGTACAAGTGTGTCCCTCCTCCTTTCGA.................................................................. 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATGATCTCTGTCAGCTTGTGTGTG........................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TAAGAAACTTACCAGGTG......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................TCAAATGAAACGCATATCAAGTG................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................GCCAGAGCAACAACGTGTCCCAGAGT........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CATAGTACTAAGAAACTTACCAGGTG......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TATGAGATCAAATGAAACGCATATCAAG..................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................AGTCAGGTGAGCTTATGAGATCAAATGA.................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CGAAGAAACTTACCAGGT.......................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TAGTACTAAAAAACTTACCAGGTG......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................TGAGATCAAATGAAACGCATATCAAGTG................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CTCTCTCAGCTTGTGTGTGT....................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................AAGAAACTTACCAGG........................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................AAGAACCTTACCTGGT.......................................................................................................................... 16 2 20 0.35 7 0 1 3 0 0 0 0 1 0 2 0
................................................................................................................AAGAATCTTACCAGGT.......................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AAGAAACTTACAAGG........................................................................................................................... 15 1 20 0.30 6 1 1 3 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GTCCAACTTCGTCCGTGCGA......... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................AAGAAACTAACCAGG........................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
............ACTCCCTTCGCCAGA............................................................................................................................................................................................................................... 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACAAACTTACCAGG........................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................AAACTCAGATAAAGTGCTGA............................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TACTGCAGTTGGCATTGC................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATTTCGCCATGCCGAGGGAAGCGGTCTCGTTGTTGCACAGGGTCTCAGTCCACTCGAATACTCTAGTTTACTTTGCGTATAGTTCACGACTGGTCCCGAATACGTATCATGATTCTTTGAATGGTCCACACGACCACGACGTCAACAGTAACGTCAACATGTTCACACAGGGAGGAGAGGAGCTTATACTAGAGAGAGTCGAACACACACACAGATTCCTCCCGATTGAATCAGGCACGCTGCGCATATT
**********************************************************************************************************************................(((((((.(((((((..((.......))..))))))).............)))))))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...........................................................................................................................................CGTCAACAGTAACGTCAACATGTT....................................................................................... 24 0 1 13.00 13 10 3 0 0 0 0 0
..................................................................................................................................................................................................................................TGAATCAGGCACGCTGCGCAT... 21 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................TCACACAGGGAGGAGAGGAGCTTATACT............................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0
..................................GCACAGGGTCTCAGTCCACTCGA................................................................................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0
...........................................CTCAGTCCACTCGAATACTCTAGTTTA.................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................CTAGTTTACTTTGCGTATAGTTCA.................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................CGATTGAATCAGGCACGC.......... 18 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................CGTCAACAGTAACGTCAACAT.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................GTCTCGTTGTTGCACAGGGTCTCAGT......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
....................................................CTCGAATACTCTAGTTTACTT................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................TCAGTCCGCTCGAATA.............................................................................................................................................................................................. 16 1 2 1.00 2 0 1 0 1 0 0 0
..............AGGGAAGCGGTCTCGTTGTTG....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................GTCAACATGTTCACACAGGGA............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................GTTGCACAGGGTCTCAGTCCACTCGA................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................TTATACTAGAGAGAGTCGAACACACAC........................................ 27 0 1 1.00 1 0 1 0 0 0 0 0
.................GAAGCGGTCTCGTTGTTGCACAGGGTCT............................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................GGTCCCGAATACGTATCATGAT......................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................CACACAGGGAGGAGAGGAGCTTATACT............................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................AGAGAGAGTCGAACACACACACAGATTCCT.............................. 30 0 1 1.00 1 1 0 0 0 0 0 0
.......................................GGGTCTCAGTCCACTCGAATA.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................GTCAACAGTAACGTCAACATGTT....................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..............AGGGAAGCGGTCTCGTTGTTGCACAGGGT............................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0
......................................AGGGTCTCAGTCCACTCGAAT............................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................AACGTCAACATGTTCACACAG................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
..................AAGCGGTCTCGTTGTTGCAGGGGGTCT............................................................................................................................................................................................................. 27 2 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................AGTCGAACACACACACAGATTCCTC............................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................CTCGTTGTTGCACAGGGTCTC............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................AGGAGAGGAGCTTATACTAGAGAGAGT................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..............................................AGTCCACTCGAATACTCTAGTTTACTT................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0
.........................................GTCTCAGTCCACTCGAATAC............................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................TAACGTCAACATGTTCACACA................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................AGTCGAACACACACACAGATT................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................TCAGTCCGCTCGAAT............................................................................................................................................................................................... 15 1 3 0.33 1 0 1 0 0 0 0 0
.............................................CAGTCCGCTCGAATA.............................................................................................................................................................................................. 15 1 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................TTCACACAGGTTTGAGAGGA..................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................GCTTGAATCGGGCACG........... 16 2 15 0.13 2 0 2 0 0 0 0 0
........................TCTCGTTGTTGGACAGA................................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 1 0
......CCATGCCGAGGGCCGC.................................................................................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 0 1
...................................................................................................................................................................CACACAGGGGGGTCAGGA..................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................CTTGAATCTGGCACG........... 15 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:1932942-1933191 + dsi_28343 TAAAGCGGTACGGCTCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGATCAAA--------TGAAACGCATATCAAGTGCTGACCAGGG----------------CTTATG-CATAGTACTAAGAAACTTACCAGGTGTGCTGGTGCTGCAG-TTGTCATTGCAGTTGTACAAGTGTGTCCCTCCTCTCCTCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTGTCTAAGGAGGGCTAACT-----------TAGTCCGTGCGACGCGTATAA
droSec2 scaffold_10:1878321-1878570 + TAAAGCGGTATGGCTCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGATCAAA--------TGAAACGCATATCAAGTGCTGACCAGGG----------------CTTATG-CATAGTACGAAGAAACTTACCAGGTGTGCTGGTGCTGCAG-TTGTCATTGCAGTTGTACAAGTGTGTCCCTCCTCTCCTCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTGTTGAAGGAGGGCTAACT-----------TAGTCCGTGCTACACGTATAA
dm3 chrX:2095045-2095347 + TAAAGCGGTACGGATCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGAACAAA--------TGAAACGCATATCAAGTGCTGATTAGGG----------------CTTATG-CATAGTACTAAGAAACTTACTAGGTGTGCTGGTGCTGCAGGTTGTCATTGCACTAGTATAAGTGTGTCCCTCCTCTCCTCGAATATGATCTGTAAAATCCGTATACTTTTTAGCCACTACTTATTTTAAATGTACTCACCTTGTGTGTGTGCCGAAGGAGGACTAACTTGCTTAACCCTTAGTCCGGGCGGCGCGTATAA
droEre2 scaffold_4644:2058078-2058138 + TAAAGCGCTACGGGTCCCTTCGCCAGAGCAACAACGTGTCGCAGAGTCAGGTGAGCTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_5835:500-610 + TTAAGCGCTACGGCTCCCTTCGCCAGAGCACCAACATTTCACAGAGTCAGGTGAGCTTTTCCAACCACA--------TGAAATGCATAGGAAGTGCATA--------------------------TATAATAGTACTAAGCAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409093:18630-18686 - TCAAGCGGTACGGATCCCTTCGCCAGAACAACAGTGTATCACAGAGTCAGGTGAGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:2074481-2074630 + TCAAGCGGTATGGATCCCTTCGCCAGAGCAACAATGTGTCACAGAGTCAGGTGAGCTATTGGGAACAGGGAAATAAGAGT-ACTTTTACAAAATACCGAACTAGAACTTGGAATTGTATCAATTATT-TATGGAACTATAAGACTTACCAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415191:178932-179005 + TCAAGCGGTACGGTTCGCTGCGCCAGAGCAACAATGTGTCACAGAGTCAGGTGAGTCTGGGGGAATAAA--------AGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491001:1646951-1647055 + TCAAGCGGTACGGATCACTCCGCCAGAGCAACAATGTGTCACAGAGTACGGTGAGTTGATAGAAATAAA--------TTAAATG------AAGTG------AGGT----------------CTTATA-CA-AATACAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779506:164613-164696 + TCAAGCGGTACGGATCACTCCGGCAGAGCAACAACGTGTCACAGAGTCAGGTGAGTTCCTAGGAGTAAA--------T--AATGTATATAATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454072:3217597-3217672 + TCAAGCGGTACGGATCCCTCCGCCAGAGCAACAGTGTGGCGCAGAGTCAGGTGAGCTTTGGGGTCCGAT---------G----GCATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302696:668408-668470 + TCAAGCGCTATGGATCCCTGCGACAGAACAATAATCTCTCCCAGAGTCAGGTGAGGATTTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12929:1988145-1988208 + TCAAGCGCTATGGATCACTGCGTCAGAGCAACAATATATCCCAAAGTCAGGTGAGTTTCAGAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396543:446157-446218 + TCAAGCGTTATGGATCACTGCGTCAAAGCAACAACATATCCCAAAGTCAGGTGAGTTGTGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1a:97381-97437 + TCAAGCGATATGGTTCCTTACGCCAGAGTAATCAGATGGACCAGAGTCAGGTAGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_26:575322-575378 - TCAAGCGATATGGTTCCTTACGCCAGAGTAATCAGATGGACCAGAGTCAGGTAGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:1303123-1303178 - TTAAGCGATATGGATCATTGCGGCAAAGCAACCAATTGGCCCACAGTCAGGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:5589314-5589369 + TCAGGCGCTACGGCTCCCTCAGACAGACGCATCCGCTGGCCCAGAGTCAGGTAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:1474265-1474322 + TCAAGCGCTATGGATCCCTAAGACAGAGTCATCCTTTGGCCCAGAGTCAGGTAAGCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAAGCGGTACGGCTCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGATCAAA--------TGAAACGCATATCAAGTGCTGACCAGGG----------------CTTATG-CATAGTACTAAGAAACTTACCAGGTGTGCTGGTGCTGCAG-TTGTCATTGCAGTTGTACAAGTGTGTCCCTCCTCTCCTCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTGTCTAAGGAGGGCTAACT-----------TAGTCCGTGCGACGCGTATAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................TAGTACTAAGAAACTTACCAGGTGTGC...........................................................................................................................................................................27127.0027000000019170000000
...................................................................................................................................................................................................................TATGATCTCT-----------------------------------------CTCAGCTTGTGTGTG...................................................25123.0023000000013280000000
...................................................................................................................................................................................................................TATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGT..................................................26110.001000000003070000000
..................................................................................................................................TAGTACTAAGAAACTTACCAGGTG..............................................................................................................................................................................24110.001000000006130000000
..................TTCGCCAGAGCAACAACGTGTCCCAGA...........................................................................................................................................................................................................................................................................................2718.00800000004040000000
................................................................................................TGACCAGGG----------------CTTATG-CATAGTACTAAGA...........................................................................................................................................................................................2818.00800000006110000000
......................................TCCCAGAGTCAGGTGAGCTTATGAGA........................................................................................................................................................................................................................................................................2617.00700000005020000000
..........................................................................................................................................................................................................................TCT-----------------------------------------CTCAGCTTGTGTGTGTGTCTAAGGA.........................................2817.00700000006010000000
..............................................................................................................................................................................................................TCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTG.....................................................2816.00600000003030000000
...........................................................TGAGATCAAA--------TGAAACGCATATCAAG...........................................................................................................................................................................................................................................2615.00500000002120000000
TAAAGCGGTACGGCTCCCTTCGCCAGA.............................................................................................................................................................................................................................................................................................................2715.00500000004010000000
....................................TGTCCCAGAGTCAGGTGAGCTTATGAGA........................................................................................................................................................................................................................................................................2815.00500000005000000000
...................................................................................................................................................................................................................TATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTG.................................................2715.00500000004010000000
....................................................................................................CAGGG----------------CTTATG-CATAGTACTAAGAAACT.......................................................................................................................................................................................2815.00500000005000000000
.............................................................................TGAAACGCATATCAAGTGCTGACCAGGG----------------...............................................................................................................................................................................................................2815.00500000004010000000
...................................................TGAGCTTATGAGATCAAA--------TGAAACGCA..................................................................................................................................................................................................................................................2715.00500000011030000000
....................................TGTCCCAGAGTCAGGTGAGCTTATGA..........................................................................................................................................................................................................................................................................2614.00400000001030000000
...................................................................................................................................................................................................................................................................................................TAACT-----------TAGTCCGTGCGACGCGTATA.2514.00400000001030000000
.............................................................................................................................TG-CATAGTACTAAGAAACTTACCAGG................................................................................................................................................................................2614.00400000003010000000
........................AGAGCAACAACGTGTCCCAGAGTCAGG.....................................................................................................................................................................................................................................................................................2714.00400000002020000000
...........................................................................................................................................................................................................TCCTCGAATATGATCTCT-----------------------------------------CTCAGCT...........................................................2514.00400000001030000000
..................................................................................................................................................................................................................ATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTG...................................................2613.00300000003000000000
.....................................................................................................................................TACTAAGAAACTTACCAGGTGTGCTGG........................................................................................................................................................................2713.00300000002010000000
..............................................................................................................................................................................................................TCGAATATGATCTCT-----------------------------------------CTCAGCTTGTG.......................................................2613.00300000002010000000
.............................................GTCAGGTGAGCTTATGAGATCAAA--------TGA........................................................................................................................................................................................................................................................2713.00300000002010000000
.......................................................................................................................................................................................................................................................................TCAGCTTGTGTGTGTGTCTAAGGA.........................................2413.00300000003000000000
...................................................................................................................................................................................................................TATGATCTCT-----------------------------------------CTCAGCTTGTGTGT....................................................2413.00300000002010000000
............................................................................................................................................................................................................................T-----------------------------------------CTCAGCTTGTGTGTGTGTCTAAGGA.........................................2613.00300000003000000000
.....................................................................................................................................................................................................................TGATCTCT-----------------------------------------CTCAGCTTGTGTGTG...................................................2312.00200000001010000000
..........................................................................................................................................................................TGTCATTGCAGTTGTACAAGTGTGTC....................................................................................................................................2612.00200000001100000000
...............................................CAGGTGAGCTTATGAGATCAAA--------TGAAA......................................................................................................................................................................................................................................................2712.00200000000020000000
.................................................GGTGAGCTTATGAGATCAAA--------TGAAACGCA..................................................................................................................................................................................................................................................2912.00200000002000000000
.........................................................................................................................................................................................................................................................................................TAAGGAGGGCTAACT-----------TAGTCCGTGCGA.........2712.00200000000110000000
................................................................................AACGCATATCAAGTGCTGACCAGGG----------------CT.............................................................................................................................................................................................................2712.00200000001010000000
..............................................................................................................................................................................................................................................................................................AGGGCTAACT-----------TAGTCCGTGCGACGCGTA...2812.00200000001010000000
..................................................................................................................................TAGTACTAAGAAACTTACCAGGTGTGCT..........................................................................................................................................................................2812.00200000001010000000
................................................................................................TGACCAGGG----------------CTTATG-CATAGT..................................................................................................................................................................................................2112.00200000100010000000
...........................................................................................................................................................................................................TCCTCGAATATGATCTCT-----------------------------------------CTCAGCTTG.........................................................2712.00200000000020000000
......................................................................................................................................................................................TGTACAAGTGTGTCCCTCCTCTCCTCGA......................................................................................................................2812.00200000001010000000
............................................................................................................................................................................................................................................................................................GGAGGGCTAACT-----------TAGTCCGTGCGACGCG.....2812.00200000001010000000
................................................................................................................................................................................................................GAATATGATCTCT-----------------------------------------CTCAGC............................................................1912.00200200000000000000
................................................AGGTGAGCTTATGAGATCAAA--------TGAAAA.....................................................................................................................................................................................................................................................2712.00200000000020000000
....................................TGTCCCAGAGTCAGGTGAGCTTATGAG.........................................................................................................................................................................................................................................................................2712.00200000000020000000
.........................................................................................................................................................................................................TCTCCTCGAATATGATCTCT-----------------------------------------CTCAGC............................................................2612.00200000000020000000
.............................................GTCAGGTGAGCTTATGAGATCAAA--------TG.........................................................................................................................................................................................................................................................2612.00200000000020000000
...........................................................................................................................................................................................................................CT-----------------------------------------CTCAGCTTGTGTGTGTGTCTAAGG..........................................2612.00200000000020000000
..............................................................................................................................................................................................................TCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGT......................................................2712.00200000000020000000
.....................................................................................................................................................................................................................TGATCTCT-----------------------------------------CTCAGCTTGTGTGTGT..................................................2412.00200000001010000000
................................................................................................TGACCAGGG----------------CTTATG-CATAGTACT...............................................................................................................................................................................................2412.00200000001010000000
...............................................................................................................................................................................................................CGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTG.....................................................2712.00200000001010000000
....................................TGTCCCAGAGTCAGGTGAGCTTAAA...........................................................................................................................................................................................................................................................................2512.00200000000020000000
.............................................................................TGAAACGCATATCAAGTGCTGACCAGG................................................................................................................................................................................................................................2712.00200000001010000000
.............................................................................................................................................................................................................CTCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTG.....................................................2912.00200000001100000000
.................................................................................................................................ATAGTACTAAGAAACTTACCAGGTGTGC...........................................................................................................................................................................2812.00200000001010000000
..............TCCCTTCGCCAGAGCAACAACGTGTC................................................................................................................................................................................................................................................................................................2612.00200000001010000000
..........................................................ATGAGATCAAA--------TGAAACGCAT.................................................................................................................................................................................................................................................2111.00100000001000000000
..................................................................................................................................TAGTACTAAGAAACTTACCAGG................................................................................................................................................................................2211.00100000000010000000
.............................................................................TGAAACGCATATCAAGTGCTGACCAGGG----------------C..............................................................................................................................................................................................................2911.00100000001000000000
......................................................................................................................................................................................................TCCTCTCCTCGAATATGATCTCT-----------------------------------------CTC...............................................................2611.00100000000010000000
...........................................GAGTCAGGTGAGCTTATGAGATCAAA--------...........................................................................................................................................................................................................................................................2611.00100000001000000000
...............................................................................................................................................................................................................CGAATATGATCTCT-----------------------------------------CTCAGCT...........................................................2111.00100000000010000000
........................AGAGCAACAACGTGTCCCAGAGTCAG......................................................................................................................................................................................................................................................................................2611.00100000001000000000
TAAAGCGGTACGGCTCCCTTCGCCAG..............................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.......................................................................................................................................CTAAGAAACTTACCAGGTGTG............................................................................................................................................................................2111.00100000001000000000
.......................................................................................................................................CTAAGAAACTTACCAGGTGTGCTGG........................................................................................................................................................................2511.00100000001000000000
..........................................................................................................................................................................................................................TCT-----------------------------------------CTCAGCTTGTGTGTGTGTCTAAG...........................................2611.00100000001000000000
...........................GCAACAACGTGTCCCAGA...........................................................................................................................................................................................................................................................................................1811.00100000000000100000
....................................TGTCCCAGAGTCAGGTGAGCTTATG...........................................................................................................................................................................................................................................................................2511.00100000001000000000
.....................................................................................................................................................................................................................TGATCTCT-----------------------------------------CTCAGCTTGTGT......................................................2011.00100000001000000000
.........................................................................................................................................................................................................................................................................................TAAGGAGGGCTAACT-----------TAGTCCGTGC...........2511.00100000000010000000
..............................................................................................................................................................................................................TCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGT..................................................3111.00100000001000000000
.........................................................................................................................................................................................................................................................................................TAAGGAGGGCTAACT-----------TAGTCCGTGCGACGC......3011.00100000001000000000
.......................................................................................................................................................................................................................................................................TCAGCTTGTGTGTGTGTCTAAGGAGGGC.....................................2811.00100000001000000000
............................................................................................................................................................................TCATTGCAGTTGTACAAGTGTGTCCC..................................................................................................................................2611.00100000000010000000
................................................................................................TGACCAGGG----------------CTTATG-CATAGTACTA..............................................................................................................................................................................................2511.00100000001000000000
..............................................................................................................................................................................................................TCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTG...................................................3011.00100000001000000000
..................TTCGCCAGAGCAACAACGTGTCCCAGAGT.........................................................................................................................................................................................................................................................................................2911.00100000001000000000
................................................................................................................................................................................................................GAATATGATCTCT-----------------------------------------CTCAGCTTGTGTG.....................................................2611.00100000000010000000
...................................................................................................................................................................TGCAG-TTGTCATTGCAGTTGTACAAG..........................................................................................................................................2611.00100000000010000000
.....................................................................................................................................................................................................................TGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTGT................................................2611.00100000000010000000
......................................................................................TATCAAGTGCTGACCAGGG----------------CTTATG-C.......................................................................................................................................................................................................2611.00100000000010000000
..................................................................................................ACCAGGG----------------CTTATG-CATAGTACTAAGA...........................................................................................................................................................................................2611.00100000001000000000
..................................................................................................................................TAGTACTAAGAAACTTACCAGGTGT.............................................................................................................................................................................2511.00100000001000000000
.......................................CCCAGAGTCAGGTGAGCTTATGAGA........................................................................................................................................................................................................................................................................2511.00100000001000000000
..............................................TCAGGTGAGCTTATGAGATCAAA--------...........................................................................................................................................................................................................................................................2311.00100000000010000000
...........................................................................................................................TATG-CATAGTACTAAGAAACTTACCAGGA...............................................................................................................................................................................2911.00100000001000000000
.....................................................................................................................................TACTAAGAAACTTACCAGGTGTG............................................................................................................................................................................2311.00100000001000000000
...................................................................................................................................................................................................................TATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTGT................................................2811.00100000001000000000
...........................................................................................................................TATG-CATAGTACTAAGAAACT.......................................................................................................................................................................................2111.00100000001000000000
.........................................................................................................................................................................................................................................................................................TAAGGAGGGCTAACT-----------TAGTCCGTGCGACGCG.....3111.00100000001000000000
........................................................................................................................................................................................TACAAGTGTGTCCCTCCTCTCCTCGAA.....................................................................................................................2711.00100000001000000000
........................................................................................TCAAGTGCTGACCAGGG----------------CTTATG-CATAG...................................................................................................................................................................................................2811.00100000001000000000
..........................AGCAACAACGTGTCCCAGAGTCAGG.....................................................................................................................................................................................................................................................................................2511.00100000001000000000
..............................................TCAGGTGAGCTTATGAGATCAAA--------TG.........................................................................................................................................................................................................................................................2511.00100000000010000000
................................................................................................TGACCAGGG----------------CTTATG-CATAGTACTAAGAAA.........................................................................................................................................................................................3011.00100000001000000000
.....................................................................................................AGGG----------------CTTATG-CATAGTACTAAGAAACT.......................................................................................................................................................................................2711.00100000001000000000
.........................................................................................................................................................................................................................................................................AGCTTGTGTGTGTGTCTAAGG..........................................2111.00100000001000000000
...........................................................................................................................TATG-CATAGTACTAAGAAACTTACCAGG................................................................................................................................................................................2811.00100000000010000000
..........................................................................................................................................................................TGTCATTGCAGTTGTACAAGTGTGTCC...................................................................................................................................2711.00100000000010000000
.............................................................................................................................TG-CATAGTACTAAGAAACTTACCAGGTG..............................................................................................................................................................................2811.00100000001000000000
........................................................................................................................................TAAGAAACTTACCAGGTGTGCTGG........................................................................................................................................................................2411.00100000000010000000
........................................................................................................................................................................................................................TCTCT-----------------------------------------CTCAGCTTGTGTGTGTGTC...............................................2411.00100000000010000000
......................................................................................................................................................................................................TCCTCTCCTCGAATATGATCTCT-----------------------------------------CTCAGC............................................................2911.00100000001000000000
..........................................................................................................................................................................................................................TCT-----------------------------------------CTCAGCTTGTGTGTGTGTCTA.............................................2411.00100000001000000000
............................CAACAACGTGTCCCA.............................................................................................................................................................................................................................................................................................1511.00100000001000000000
..................TTCGCCAGAGCAACAACGTGTCCC..............................................................................................................................................................................................................................................................................................2411.00100000000010000000
...........................GCAACAACGTGTCCCAGAGTCAGGTGA..................................................................................................................................................................................................................................................................................2711.00100000001000000000
.....................................GTCCCAGAGTCAGGTGAGCTTATGAGA........................................................................................................................................................................................................................................................................2711.00100000001000000000
.......................................................................................................GG----------------CTTATG-CATAGTACTAAGAAACT.......................................................................................................................................................................................2511.00100000001000000000
................................................AGGTGAGCTTATGAGATCAAA--------TGAAACGCA..................................................................................................................................................................................................................................................3011.00100000001000000000
..............................................TCAGGTGAGCTTATGAGATCA.....................................................................................................................................................................................................................................................................2111.00100000000010000000
....................................................................................................CAGGG----------------CTTATG-CATAGTACTAAGAAAC........................................................................................................................................................................................2711.00100000001000000000
........................................................................................................................................TAAGAAACTTACCAGGTGTGCTGGTG......................................................................................................................................................................2611.00100000000010000000
..........................................................................................................................TTATG-CATAGTACTAAGAAACTTACC...................................................................................................................................................................................2611.00100000000010000000
........................................................................................................................................TAAGAAACTTACCAGGTGTGCTGGTGC.....................................................................................................................................................................2711.00100000000010000000
..............................................TCAGGTGAGCTTATGAGATCAAA--------TGA........................................................................................................................................................................................................................................................2611.00100000000010000000
..................................................................................................................................TAGTACTAAGAAACTTACCAGGTGTG............................................................................................................................................................................2611.00100000000010000000
.......................CAGAGCAACAACGTGTCCCA.............................................................................................................................................................................................................................................................................................2011.00100000001000000000
..........................................................................................................................................................................TGTCATTGCAGTTGTACAAGTGTGTCCC..................................................................................................................................2811.00100000001000000000
......................................TCCCAGAGTCAGGTGAGCTTATGA..........................................................................................................................................................................................................................................................................2411.00100000000010000000
......GGTACGGCTCCCTTCGCC................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...................................................................................................................................AGTACTAAGAAACTTACCAGGTGTGC...........................................................................................................................................................................2611.00100000001000000000
...........................................................TGAGATCAAA--------TGAAACGCATATCAA............................................................................................................................................................................................................................................2511.00100000000010000000
..................................CGTGTCCCAGAGTCAGGTGAGCTTA.............................................................................................................................................................................................................................................................................2511.00100000000010000000
........................................................................................................................................TAAGAAACTTACCAGGTGTGCTG.........................................................................................................................................................................2311.00100000001000000000
..............................................................................................................................................................................................TGTGTCCCTCCTCTCCTCGAATATGA................................................................................................................2611.00100000000010000000
........................................................................................................................................TAAGAAACTTACCAGGTG..............................................................................................................................................................................1811.00100000001000000000
................................................................TCAAA--------TGAAACGCATATCAAGTG.........................................................................................................................................................................................................................................2311.00100000001000000000
.....................GCCAGAGCAACAACGTGTCCCAGAGT.........................................................................................................................................................................................................................................................................................2611.00100000001000000000
................................................................................................................................CATAGTACTAAGAAACTTACCAGGTG..............................................................................................................................................................................2611.00100000001000000000
.........................................................TATGAGATCAAA--------TGAAACGCATATCAAG...........................................................................................................................................................................................................................................2811.00100000000010000000
............................................AGTCAGGTGAGCTTATGAGATCAAA--------TGA........................................................................................................................................................................................................................................................2811.00100000000010000000
...........................................................TGAGATCAAA--------TGAAACGCATATCAAGTG.........................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................................................................................................................................................................CTCT-----------------------------------------CTCAGCTTGTGTGTGT..................................................2011.00100010000000000000
.........................................................................................................................................AAGAAACTTACCAGG................................................................................................................................................................................1511.00100000000100000000
droSec2
TAAAGCGGTATGGCTCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGATCAAA--------TGAAACGCATATCAAGTGCTGACCAGGG----------------CTTATG-CATAGTACGAAGAAACTTACCAGGTGTGCTGGTGCTGCAG-TTGTCATTGCAGTTGTACAAGTGTGTCCCTCCTCTCCTCGAATATGATCTCT-----------------------------------------CTCAGCTTGTGTGTGTGTTGAAGGAGGGCTAACT-----------TAGTCCGTGCTACACGTATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................GCCAGAGCAACAACGTGTCCCAGAG..........................................................................................................................................................................................................................................................................................2511.0010010
.................................ACGTGTCCCAGAGTCAGGA....................................................................................................................................................................................................................................................................................1911.0010010
..AAGCGGTATGGCTCCCTTCGCCAGA.............................................................................................................................................................................................................................................................................................................2511.0010010
...........................GCAACAACGTGTCCCAGAGTC........................................................................................................................................................................................................................................................................................2111.0011000
....................CGCCAGAGCAACAACGTGT.................................................................................................................................................................................................................................................................................................1911.0010010
dm3
TAAAGCGGTACGGATCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCAGGTGAGCTTATGAGAACAAA--------TGAAACGCATATCAAGTGCTGATTAGGG----------------CTTATG-CATAGTACTAAGAAACTTACTAGGTGTGCTGGTGCTGCAGGTTGTCATTGCACTAGTATAAGTGTGTCCCTCCTCTCCTCGAATATGATCTGTAAAATCCGTATACTTTTTAGCCACTACTTATTTTAAATGTACTCACCTTGTGTGTGTGCCGAAGGAGGACTAACTTGCTTAACCCTTAGTCCGGGCGGCGCGTATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............ATCCCTTCGCCAGAGCAACAACGTGTCCC..............................................................................................................................................................................................................................................................................................2917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCAGAGCAACAACGTGTCC...............................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................AATATGATCTGTAAAATCCGT..................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCTGATTAGGG----------------CTTATG-C.......................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCCAGAGCAACAACGTGTCCCAGAG..........................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGAGCAACAACGTGTCCCAGAGTC........................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CGAAGGAGGACTAACTTGCT............................2012.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TAGCCACTACTTATTTTAAATGTAC.................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGAGCAACAACGTGTCCCA.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......GGTACGGATCCCTTCGCCAGAGCAAC........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................GCCAGAGCAACAACGTGTCC...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TGTGTGTGTGCCGAAGGAGGA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................GCAACAACGTGTCCCAGAGTCAG......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................GCTGGTGCTGCAGGTTGTCAT........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GAAACTTACTAGGTGTGCTGG........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTGTGTGTGTGCCGAAGGAGGA......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CAGAGCAACAACGTGTCCC..............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................CGCCAGAGCAACAACGTGTCCCA.............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................GCCAGAGCAACAACGTGT.................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................GAGCAACAACGTGTCCCAGA...........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGGTACGGATCCCTTCGC.................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGAGCAACAACGTGTCCCAGAG..........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCCCTTCGCCAGAGCAACAACGTGTCC...............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAGCGGTACGGATCCCTTCGCC................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCCCTTCGCCAGAGCAACAACGTGTCC...............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTTTAAATGTACTCACCTTGT........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GTACTAAGAAACTTACTAGGTGT.............................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTGTGTGTGTGCCGAAGGAG........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
................................AACGTGTCCCAGAGTCAG......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................................................................TCAAGTGCTGATTAGGG----------------CTTATG-C.......................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........TACGGATCCCTTCGCCAGAGCAACAACG....................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................TGTGTCCCTCCTCTCCTCGAAT....................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTGCCGAAGGAGGACTAACTTG..............................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GGATCCCTTCGCCAGAGCAACA.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ACTTACTAGGTGTGCTGG........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................TACTTTTTAGCCACTACTT..............................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGCATATCAAGTGCTGATAG..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGAGCAACAACGTGTCCCAGA...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TGTGTGTGTGCCGAAGGAGGAC.....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................CCAGAGCAACAACGTGTCCCAGAGTC........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TAGTCCGGGCGGCGCGTATAA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTTCGCCAGAGCAACAACGTGTCCCAGA...........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGTCCGGGCGGCGCGTTGG.1940.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAAAGCGCTACGGGTCCCTTCGCCAGAGCAACAACGTGTCGCAGAGTCAGGTGAGCTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........ACGGGTCCCTTCGCCAGAGCAACAAC.....................................................................................................................................................................................................................................................................................................2611.0010000010
...AGCGCTACGGGTCCCTTCGCCAGAGC...........................................................................................................................................................................................................................................................................................................2611.0010000010
..............................ACAACGTGTCGCAGAGTCAGG.....................................................................................................................................................................................................................................................................................2111.0010000100
...........................GCAACAACGTGTCGCAGA...........................................................................................................................................................................................................................................................................................1811.0011000000
droYak3
TTAAGCGCTACGGCTCCCTTCGCCAGAGCACCAACATTTCACAGAGTCAGGTGAGCTTTTCCAACCACA--------TGAAATGCATAGGAAGTGCATA--------------------------TATAATAGTACTAAGCAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......GCTACGGCTCCCTTCGCCAGA.............................................................................................................................................................................................................................................................................................................2112.00201100000000
....GCGCTACGGCTCCCTTCGCC................................................................................................................................................................................................................................................................................................................2011.00100100000000
........TACGGCTCCCTTCGCCAGAGC...........................................................................................................................................................................................................................................................................................................2111.00100100000000
droEug1
TCAAGCGGTACGGATCCCTTCGCCAGAACAACAGTGTATCACAGAGTCAGGTGAGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCAAGCGGTATGGATCCCTTCGCCAGAGCAACAATGTGTCACAGAGTCAGGTGAGCTATTGGGAACAGGGAAATAAGAGT-ACTTTTACAAAATACCGAACTAGAACTTGGAATTGTATCAATTATT-TATGGAACTATAAGACTTACCAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAAGCGGTACGGTTCGCTGCGCCAGAGCAACAATGTGTCACAGAGTCAGGTGAGTCTGGGGGAATAAA--------AGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCAAGCGGTACGGATCACTCCGCCAGAGCAACAATGTGTCACAGAGTACGGTGAGTTGATAGAAATAAA--------TTAAATG------AAGTG------AGGT----------------CTTATA-CA-AATACAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCAAGCGGTACGGATCACTCCGGCAGAGCAACAACGTGTCACAGAGTCAGGTGAGTTCCTAGGAGTAAA--------T--AATGTATATAATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCAAGCGGTACGGATCCCTCCGCCAGAGCAACAGTGTGGCGCAGAGTCAGGTGAGCTTTGGGGTCCGAT---------G----GCATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCAAGCGCTATGGATCCCTGCGACAGAACAATAATCTCTCCCAGAGTCAGGTGAGGATTTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCAAGCGCTATGGATCACTGCGTCAGAGCAACAATATATCCCAAAGTCAGGTGAGTTTCAGAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............ATCACTGCGTCAGAGCAAC........................................................................................................................................................................................................................................................................................................1911.001100000
............GATCACTGCGTCAGAGCAACAATATAG.................................................................................................................................................................................................................................................................................................2711.001000010
........TATGGATCACTGCGTCAGAGC...........................................................................................................................................................................................................................................................................................................2111.001001000
droBip1
TCAAGCGTTATGGATCACTGCGTCAAAGCAACAACATATCCCAAAGTCAGGTGAGTTGTGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCAAGCGATATGGTTCCTTACGCCAGAGTAATCAGATGGACCAGAGTCAGGTAGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................TAATCAGATGGACCAGAG..........................................................................................................................................................................................................................................................................................1811.0010000100000
................................CAGATGGACCAGAGTCAGG.....................................................................................................................................................................................................................................................................................1911.0010100000000
...AGCGATATGGTTCCTTACGCCAGAG............................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................GCCAGAGTAATCAGATGG.................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
TCAAGCGATATGGTTCCTTACGCCAGAGTAATCAGATGGACCAGAGTCAGGTAGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........ATGGTTCCTTACGCCAGAGTAATCA......................................................................................................................................................................................................................................................................................................2511.001010000
droWil2
TTAAGCGATATGGATCATTGCGGCAAAGCAACCAATTGGCCCACAGTCAGGTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........ATGGATCATTGCGGCAAAGC...........................................................................................................................................................................................................................................................................................................2012.00200020
.......ATATGGATCATTGCGGCA...............................................................................................................................................................................................................................................................................................................1811.00100010
........TATGGATCATTGCGGCAAAGC...........................................................................................................................................................................................................................................................................................................2111.00100010
.TAAGCGATATGGATCATTGC...................................................................................................................................................................................................................................................................................................................2011.00100010
..................TGCGGCAAAGCAACCAATT...................................................................................................................................................................................................................................................................................................1911.00101000
..AAGCGATATGGATCATTGC...................................................................................................................................................................................................................................................................................................................1911.00100100
................................CAATTGGCCCACAGTCAG......................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TCAGGCGCTACGGCTCCCTCAGACAGACGCATCCGCTGGCCCAGAGTCAGGTAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................CCGCTGGCCCAGAGTCAGGA....................................................................................................................................................................................................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
......................ACAGACGCATCCGCTGGCCCAGAGT.........................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............CCCTCAGACAGACGCATCCGCTGGCC...............................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..................TCAGACAGACGCATCCGCTGGCCCAGAGTCAGGA....................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000000000000000010000
droGri2
TCAAGCGCTATGGATCCCTAAGACAGAGTCATCCTTTGGCCCAGAGTCAGGTAAGCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................AGACAGAGTCATCCTTTGGC................................................................................................................................................................................................................................................................................................2011.00110
...........GGATCCCTAAGACAGAGTCATC.......................................................................................................................................................................................................................................................................................................2211.00110
TCAAGCGCTATGGATCCCTAA...................................................................................................................................................................................................................................................................................................................2111.00110
TCAAGCGCTATGGATCCCT.....................................................................................................................................................................................................................................................................................................................1911.00110
.....................GACAGAGTCATCCTTTGGC................................................................................................................................................................................................................................................................................................1911.00110
..................................TTTGGCCCAGAGTCAGGAG...................................................................................................................................................................................................................................................................................1920.50110

Generated: 05/18/2015 at 08:05 PM